GO:0005683
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U7 snRNP
Cellular Component
Definition (GO:0005683 GONUTS page)
A ribonucleoprotein complex that contains the U7 snRNA and is required for the 3'-end processing of replication-dependent histone pre-mRNAs. PMID:12872004
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
snRNP U7 | exact |
Ancestor Chart
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0005683 | U7 snRNP | Only in Taxon | 2759 | Eukaryota |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A096MJ18 | 10116 | A0A096MJ18_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A096MK97 | 10116 | A0A096MK97_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0G2JW23 | 10116 | A0A0G2JW23_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0G2K8T1 | 10116 | A0A0G2K8T1_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1B0GR71 | 10090 | A0A1B0GR71_MOUSE | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636 | |
NOT-qualified manual | protein | A0A1B0GRK6 | 10090 | A0A1B0GRK6_MOUSE | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636 | |
NOT-qualified manual | protein | A0A1D8PHF8 | 237561 | A0A1D8PHF8_CANAL | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:8760936 | |
NOT-qualified manual | protein | A0A1W2Q633 | 10116 | A0A1W2Q633_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5Y8H4 | 10116 | A0A8I5Y8H4_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A0E5 | 10116 | A0A8I6A0E5_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0005683 based on ALL annotations
The top 75 of 75 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
U7 snRNP
|
107,522.77 | 100.00 | 1,813 | 1,813 |
U7 snRNA binding
|
62,302.54 | 52.99 | 1,561 | 2,694 |
mRNA 3'-end processing by stem-loop binding and cleavage
|
10,603.90 | 9.64 | 1,465 | 14,855 |
histone pre-mRNA DCP binding
|
17,974.44 | 7.61 | 222 | 1,328 |
methylosome
|
8,977.89 | 6.13 | 339 | 4,060 |
U2-type precatalytic spliceosome
|
7,252.33 | 5.22 | 339 | 5,026 |
SMN-Sm protein complex
|
5,783.91 | 4.36 | 339 | 6,302 |
positive regulation of G1/S transition of mitotic cell cycle
|
6,273.04 | 3.80 | 178 | 3,051 |
cytoplasmic U snRNP body
|
8,172.75 | 3.22 | 96 | 1,263 |
histone pre-mRNA 3'end processing complex
|
5,171.64 | 3.16 | 153 | 3,181 |
Totals | 14499 | 204991105 |
No co-occurrence statistics for GO:0005683 based on MANUAL annotations
The top 56 of 56 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
U7 snRNP
|
16,997.36 | 100.00 | 76 | 76 |
U7 snRNA binding
|
10,441.23 | 41.75 | 43 | 70 |
methylosome
|
5,473.72 | 24.36 | 38 | 118 |
histone pre-mRNA DCP binding
|
5,534.02 | 13.33 | 14 | 43 |
mRNA 3'-end processing by stem-loop binding and cleavage
|
2,278.63 | 11.75 | 37 | 276 |
U2-type precatalytic spliceosome
|
1,969.21 | 10.38 | 38 | 328 |
U1 snRNP binding
|
1,768.51 | 7.79 | 18 | 173 |
SMN-Sm protein complex
|
1,284.09 | 7.02 | 38 | 503 |
cytoplasmic U snRNP body
|
2,683.79 | 5.56 | 6 | 38 |
histone pre-mRNA 3'end processing complex
|
1,599.75 | 5.23 | 8 | 85 |
Totals | 1040 | 679085 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:2759 (Eukaryota) |
2009-08-03 | Added | SYNONYM | snRNP U7 |
2009-08-03 | Added | DEFINITION | A ribonucleoprotein complex that contains the U7 snRNA and is required for the 3'-end processing of replication-dependent histone pre-mRNAs. |
2009-08-03 | Deleted | DEFINITION | A ribonucleoprotein complex, that includes the U7 snRNA, required for the 3'-end processing of replication-dependent histone pre-mRNAs. |
2009-08-03 | Updated | TERM | U7 snRNP |
2008-05-13 | Added | DEFINITION | A ribonucleoprotein complex, that includes the U7 snRNA, required for the 3'-end processing of replication-dependent histone pre-mRNAs. |
2008-05-12 | Deleted | DEFINITION | A ribonucleoprotein complex, that includes the U7 snRNA, required for the 3'-end processing of replication-dependent histone pre-mRNAs. |
2008-04-01 | Updated | RELATION | is a GO:0030532 (small nuclear ribonucleoprotein complex) |
2006-08-04 | Updated | DEFINITION | A ribonucleoprotein complex, that includes the U7 snRNA, required for the 3'-end processing of replication-dependent histone pre-mRNAs. |
2003-08-27 | Updated | DEFINITION | A ribonucleoprotein complex, that includes the U7 snRNA, required for the 3'-end processing of replication dependent histone pre-mRNAs. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-08-03 | Updated | TERM | U7 snRNP |
2002-04-17 | Updated | TERM | snRNP U7 |
2002-02-06 | Updated | TERM | snRNP U7e |
2001-04-03 | Updated | TERM | snRNP U7e |
2001-03-30 | Added | TERM | snRNP U7e |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-08-03 | Added | SYNONYM | snRNP U7 |
2009-08-03 | Added | DEFINITION | A ribonucleoprotein complex that contains the U7 snRNA and is required for the 3'-end processing of replication-dependent histone pre-mRNAs. |
2009-08-03 | Deleted | DEFINITION | A ribonucleoprotein complex, that includes the U7 snRNA, required for the 3'-end processing of replication-dependent histone pre-mRNAs. |
2008-05-13 | Added | DEFINITION | A ribonucleoprotein complex, that includes the U7 snRNA, required for the 3'-end processing of replication-dependent histone pre-mRNAs. |
2008-05-12 | Deleted | DEFINITION | A ribonucleoprotein complex, that includes the U7 snRNA, required for the 3'-end processing of replication-dependent histone pre-mRNAs. |
2006-08-04 | Updated | DEFINITION | A ribonucleoprotein complex, that includes the U7 snRNA, required for the 3'-end processing of replication-dependent histone pre-mRNAs. |
2003-08-27 | Updated | DEFINITION | A ribonucleoprotein complex, that includes the U7 snRNA, required for the 3'-end processing of replication dependent histone pre-mRNAs. |
2003-08-26 | Updated | DEFINITION | A ribonucleoprotein complex, that includes the U7 snRNA, required for the 3'-end processing of replication dependent histone pre-mRNAs. |
2002-11-27 | Added | DEFINITION | Ribonucleoprotein complex containing small nuclear RNA U7. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0030532 (small nuclear ribonucleoprotein complex) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:2759 (Eukaryota) |
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