GO:0005691
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U6atac snRNP
Cellular Component
Definition (GO:0005691 GONUTS page)
A ribonucleoprotein complex that contains small nuclear RNA U6atac, the Lsm2-8 heptameric ring complex, as well as several proteins that are unique to the U6atac snRNP, most of which remain associated with the U6atac snRNA both while the U6atac snRNP is free or assembled into the U4atac/U6atac snRNP or into a series of spliceosomal complexes.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
snRNP U6atac | exact |
Ancestor Chart
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0005691 | U6atac snRNP | Only in Taxon | 2759 | Eukaryota |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A096MJ18 | 10116 | A0A096MJ18_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A096MK97 | 10116 | A0A096MK97_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0G2JW23 | 10116 | A0A0G2JW23_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0G2K8T1 | 10116 | A0A0G2K8T1_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1B0GR71 | 10090 | A0A1B0GR71_MOUSE | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636 | |
NOT-qualified manual | protein | A0A1B0GRK6 | 10090 | A0A1B0GRK6_MOUSE | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636 | |
NOT-qualified manual | protein | A0A1D8PHF8 | 237561 | A0A1D8PHF8_CANAL | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:8760936 | |
NOT-qualified manual | protein | A0A1W2Q633 | 10116 | A0A1W2Q633_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5Y8H4 | 10116 | A0A8I5Y8H4_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A0E5 | 10116 | A0A8I6A0E5_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0005691 based on ALL annotations
The top 51 of 51 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
U6atac snRNP
|
36,635.74 | 100.00 | 5,321 | 5,321 |
U4atac snRNA binding
|
34,987.54 | 93.80 | 5,222 | 5,468 |
pre-mRNA 5'-splice site binding
|
4,515.80 | 12.30 | 5,222 | 42,365 |
mRNA 5'-splice site recognition
|
4,199.03 | 11.44 | 5,222 | 45,561 |
spliceosomal tri-snRNP complex assembly
|
1,150.87 | 3.14 | 5,320 | 169,352 |
U4/U6 snRNP
|
11,125.58 | 1.78 | 99 | 326 |
U6atac snRNA binding
|
3,116.58 | 1.54 | 98 | 1,152 |
ubiquitin-specific protease binding
|
2,272.17 | 1.43 | 97 | 1,564 |
hematopoietic stem cell proliferation
|
1,593.57 | 1.30 | 97 | 2,230 |
homeostasis of number of cells
|
1,261.06 | 1.21 | 97 | 2,818 |
Totals | 28390 | 64748689 |
No co-occurrence statistics for GO:0005691 based on MANUAL annotations
The top 35 of 35 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
U6atac snRNP
|
184,542.70 | 100.00 | 7 | 7 |
U6atac snRNA binding
|
184,542.72 | 71.43 | 5 | 5 |
U4atac/U6atac snRNP
|
184,542.72 | 42.86 | 3 | 3 |
U4/U6 snRNP
|
29,138.32 | 15.38 | 6 | 38 |
transcription elongation-coupled chromatin remodeling
|
11,905.98 | 6.38 | 6 | 93 |
regulation of intrinsic apoptotic signaling pathway by p53 class mediator
|
18,454.27 | 6.25 | 1 | 10 |
ubiquitin-specific protease binding
|
8,517.36 | 4.35 | 3 | 65 |
regulation of hematopoietic stem cell proliferation
|
9,227.14 | 3.85 | 1 | 20 |
ASAP complex
|
4,147.03 | 2.21 | 4 | 178 |
U4 snRNA binding
|
3,954.49 | 2.08 | 3 | 140 |
Totals | 125 | 555768 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:2759 (Eukaryota) |
2020-11-24 | Added | RELATION | has part GO:0071019 (U12-type post-mRNA release spliceosomal complex) |
2020-11-24 | Deleted | DEFINITION | A ribonucleoprotein complex that contains small nuclear RNA U6atac. |
2020-11-24 | Added | DEFINITION | A ribonucleoprotein complex that contains small nuclear RNA U6atac, the Lsm2-8 heptameric ring complex, as well as several proteins that are unique to the U6atac snRNP, most of which remain associated with the U6atac snRNA both while the U6atac snRNP is free or assembled into the U4atac/U6atac snRNP or into a series of spliceosomal complexes. |
2015-03-16 | Deleted | RELATION | is a GO:0030532 (small nuclear ribonucleoprotein complex) |
2015-03-16 | Added | RELATION | is a GO:0097525 (spliceosomal snRNP complex) |
2010-06-15 | Added | RELATION | has part GO:0071022 (U12-type post-spliceosomal complex) |
2010-06-15 | Added | RELATION | has part GO:0071018 (U12-type catalytic step 2 spliceosome) |
2010-06-15 | Added | RELATION | has part GO:0071017 (U12-type catalytic step 1 spliceosome) |
2010-06-15 | Added | RELATION | has part GO:0071002 (U4atac/U6atac snRNP) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-08-03 | Updated | TERM | U6atac snRNP |
2002-02-06 | Updated | TERM | snRNP U6atac |
2001-04-03 | Updated | TERM | snRNP U6atac |
2001-03-30 | Added | TERM | snRNP U6atac |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-11-24 | Deleted | DEFINITION | A ribonucleoprotein complex that contains small nuclear RNA U6atac. |
2020-11-24 | Added | DEFINITION | A ribonucleoprotein complex that contains small nuclear RNA U6atac, the Lsm2-8 heptameric ring complex, as well as several proteins that are unique to the U6atac snRNP, most of which remain associated with the U6atac snRNA both while the U6atac snRNP is free or assembled into the U4atac/U6atac snRNP or into a series of spliceosomal complexes. |
2009-08-03 | Added | DEFINITION | A ribonucleoprotein complex that contains small nuclear RNA U6atac. |
2009-08-03 | Deleted | DEFINITION | Ribonucleoprotein complex containing small nuclear RNA U6atac; a component of the minor spliceosome complex. |
2009-08-03 | Added | SYNONYM | snRNP U6atac |
2008-05-13 | Added | DEFINITION | Ribonucleoprotein complex containing small nuclear RNA U6atac; a component of the minor spliceosome complex. |
2008-05-12 | Deleted | DEFINITION | Ribonucleoprotein complex containing small nuclear RNA U6atac; a component of the minor spliceosome complex. |
2002-11-27 | Added | DEFINITION | Ribonucleoprotein complex containing small nuclear RNA U6atac; a component of the minor spliceosome complex. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-11-24 | Added | RELATION | has part GO:0071019 (U12-type post-mRNA release spliceosomal complex) |
2015-03-16 | Deleted | RELATION | is a GO:0030532 (small nuclear ribonucleoprotein complex) |
2015-03-16 | Added | RELATION | is a GO:0097525 (spliceosomal snRNP complex) |
2010-06-15 | Added | RELATION | has part GO:0071022 (U12-type post-spliceosomal complex) |
2010-06-15 | Added | RELATION | has part GO:0071018 (U12-type catalytic step 2 spliceosome) |
2010-06-15 | Added | RELATION | has part GO:0071017 (U12-type catalytic step 1 spliceosome) |
2010-06-15 | Added | RELATION | has part GO:0071002 (U4atac/U6atac snRNP) |
2010-06-14 | Deleted | RELATION | has part GO:0071017 (U12-type catalytic step 1 spliceosome) |
2010-06-14 | Deleted | RELATION | has part GO:0071002 (U4atac/U6atac snRNP) |
2010-06-14 | Deleted | RELATION | has part GO:0071022 (U12-type post-spliceosomal complex) |
2010-06-14 | Deleted | RELATION | has part GO:0071018 (U12-type catalytic step 2 spliceosome) |
2010-06-08 | Added | RELATION | has part GO:0071002 (U4atac/U6atac snRNP) |
2010-06-08 | Added | RELATION | has part GO:0071018 (U12-type catalytic step 2 spliceosome) |
2010-06-08 | Added | RELATION | has part GO:0071017 (U12-type catalytic step 1 spliceosome) |
2010-06-08 | Added | RELATION | has part GO:0071022 (U12-type post-spliceosomal complex) |
2009-08-03 | Deleted | RELATION | part of GO:0005689 (U12-type spliceosomal complex) |
2008-04-01 | Updated | RELATION | part of GO:0005689 (U12-type spliceosomal complex) |
2008-04-01 | Updated | RELATION | is a GO:0030532 (small nuclear ribonucleoprotein complex) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:2759 (Eukaryota) |
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