This term is obsolete.

GO:0005691 JSON

U6atac snRNP

Cellular Component

Definition (GO:0005691 GONUTS page)

A ribonucleoprotein complex that contains small nuclear RNA U6atac, the Lsm2-8 heptameric ring complex, as well as several proteins that are unique to the U6atac snRNP, most of which remain associated with the U6atac snRNA both while the U6atac snRNP is free or assembled into the U4atac/U6atac snRNP or into a series of spliceosomal complexes.

5,325 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
snRNP U6atac exact

Ancestor Chart

Ancestor chart for GO:0005691
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Ancestor chart

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0005691 U6atac snRNP Only in Taxon 2759 Eukaryota

More information on taxon constraints in GO is available here

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A0A096MJ18 10116 A0A096MJ18_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A096MK97 10116 A0A096MK97_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0G2JW23 10116 A0A0G2JW23_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0G2K8T1 10116 A0A0G2K8T1_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1B0GR71 10090 A0A1B0GR71_MOUSE GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636
NOT-qualified manual protein A0A1B0GRK6 10090 A0A1B0GRK6_MOUSE GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636
NOT-qualified manual protein A0A1D8PHF8 237561 A0A1D8PHF8_CANAL GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:8760936
NOT-qualified manual protein A0A1W2Q633 10116 A0A1W2Q633_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I5Y8H4 10116 A0A8I5Y8H4_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A0E5 10116 A0A8I6A0E5_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0005691 based on ALL annotations
The top 51 of 51 co-occurring terms
Co-occurring Term PR S% #Together #Compared
U6atac snRNP
36,635.74 100.00 5,321 5,321
U4atac snRNA binding
34,987.54 93.80 5,222 5,468
pre-mRNA 5'-splice site binding
4,515.80 12.30 5,222 42,365
mRNA 5'-splice site recognition
4,199.03 11.44 5,222 45,561
spliceosomal tri-snRNP complex assembly
1,150.87 3.14 5,320 169,352
U4/U6 snRNP
11,125.58 1.78 99 326
U6atac snRNA binding
3,116.58 1.54 98 1,152
ubiquitin-specific protease binding
2,272.17 1.43 97 1,564
hematopoietic stem cell proliferation
1,593.57 1.30 97 2,230
homeostasis of number of cells
1,261.06 1.21 97 2,818
Totals 28390 64748689
No co-occurrence statistics for GO:0005691 based on MANUAL annotations
The top 35 of 35 co-occurring terms
Co-occurring Term PR S% #Together #Compared
U6atac snRNP
184,542.70 100.00 7 7
U6atac snRNA binding
184,542.72 71.43 5 5
U4atac/U6atac snRNP
184,542.72 42.86 3 3
U4/U6 snRNP
29,138.32 15.38 6 38
transcription elongation-coupled chromatin remodeling
11,905.98 6.38 6 93
regulation of intrinsic apoptotic signaling pathway by p53 class mediator
18,454.27 6.25 1 10
ubiquitin-specific protease binding
8,517.36 4.35 3 65
regulation of hematopoietic stem cell proliferation
9,227.14 3.85 1 20
ASAP complex
4,147.03 2.21 4 178
U4 snRNA binding
3,954.49 2.08 3 140
Totals 125 555768

Change Log

Timestamp Action Category Detail
2024-09-05 Added CONSTRAINT in_taxon NCBITaxon:2759 (Eukaryota)
2020-11-24 Added RELATION has part GO:0071019 (U12-type post-mRNA release spliceosomal complex)
2020-11-24 Deleted DEFINITION A ribonucleoprotein complex that contains small nuclear RNA U6atac.
2020-11-24 Added DEFINITION A ribonucleoprotein complex that contains small nuclear RNA U6atac, the Lsm2-8 heptameric ring complex, as well as several proteins that are unique to the U6atac snRNP, most of which remain associated with the U6atac snRNA both while the U6atac snRNP is free or assembled into the U4atac/U6atac snRNP or into a series of spliceosomal complexes.
2015-03-16 Deleted RELATION is a GO:0030532 (small nuclear ribonucleoprotein complex)
2015-03-16 Added RELATION is a GO:0097525 (spliceosomal snRNP complex)
2010-06-15 Added RELATION has part GO:0071022 (U12-type post-spliceosomal complex)
2010-06-15 Added RELATION has part GO:0071018 (U12-type catalytic step 2 spliceosome)
2010-06-15 Added RELATION has part GO:0071017 (U12-type catalytic step 1 spliceosome)
2010-06-15 Added RELATION has part GO:0071002 (U4atac/U6atac snRNP)
Timestamp Action Category Detail
2009-08-03 Updated TERM U6atac snRNP
2002-02-06 Updated TERM snRNP U6atac
2001-04-03 Updated TERM snRNP U6atac
2001-03-30 Added TERM snRNP U6atac
Timestamp Action Category Detail
2020-11-24 Deleted DEFINITION A ribonucleoprotein complex that contains small nuclear RNA U6atac.
2020-11-24 Added DEFINITION A ribonucleoprotein complex that contains small nuclear RNA U6atac, the Lsm2-8 heptameric ring complex, as well as several proteins that are unique to the U6atac snRNP, most of which remain associated with the U6atac snRNA both while the U6atac snRNP is free or assembled into the U4atac/U6atac snRNP or into a series of spliceosomal complexes.
2009-08-03 Added DEFINITION A ribonucleoprotein complex that contains small nuclear RNA U6atac.
2009-08-03 Deleted DEFINITION Ribonucleoprotein complex containing small nuclear RNA U6atac; a component of the minor spliceosome complex.
2009-08-03 Added SYNONYM snRNP U6atac
2008-05-13 Added DEFINITION Ribonucleoprotein complex containing small nuclear RNA U6atac; a component of the minor spliceosome complex.
2008-05-12 Deleted DEFINITION Ribonucleoprotein complex containing small nuclear RNA U6atac; a component of the minor spliceosome complex.
2002-11-27 Added DEFINITION Ribonucleoprotein complex containing small nuclear RNA U6atac; a component of the minor spliceosome complex.
Timestamp Action Category Detail
2020-11-24 Added RELATION has part GO:0071019 (U12-type post-mRNA release spliceosomal complex)
2015-03-16 Deleted RELATION is a GO:0030532 (small nuclear ribonucleoprotein complex)
2015-03-16 Added RELATION is a GO:0097525 (spliceosomal snRNP complex)
2010-06-15 Added RELATION has part GO:0071022 (U12-type post-spliceosomal complex)
2010-06-15 Added RELATION has part GO:0071018 (U12-type catalytic step 2 spliceosome)
2010-06-15 Added RELATION has part GO:0071017 (U12-type catalytic step 1 spliceosome)
2010-06-15 Added RELATION has part GO:0071002 (U4atac/U6atac snRNP)
2010-06-14 Deleted RELATION has part GO:0071017 (U12-type catalytic step 1 spliceosome)
2010-06-14 Deleted RELATION has part GO:0071002 (U4atac/U6atac snRNP)
2010-06-14 Deleted RELATION has part GO:0071022 (U12-type post-spliceosomal complex)
2010-06-14 Deleted RELATION has part GO:0071018 (U12-type catalytic step 2 spliceosome)
2010-06-08 Added RELATION has part GO:0071002 (U4atac/U6atac snRNP)
2010-06-08 Added RELATION has part GO:0071018 (U12-type catalytic step 2 spliceosome)
2010-06-08 Added RELATION has part GO:0071017 (U12-type catalytic step 1 spliceosome)
2010-06-08 Added RELATION has part GO:0071022 (U12-type post-spliceosomal complex)
2009-08-03 Deleted RELATION part of GO:0005689 (U12-type spliceosomal complex)
2008-04-01 Updated RELATION part of GO:0005689 (U12-type spliceosomal complex)
2008-04-01 Updated RELATION is a GO:0030532 (small nuclear ribonucleoprotein complex)
Timestamp Action Category Detail
Timestamp Action Category Detail
2024-09-05 Added CONSTRAINT in_taxon NCBITaxon:2759 (Eukaryota)
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