GO:0006357
JSON
regulation of transcription by RNA polymerase II
Biological Process
Definition (GO:0006357 GONUTS page)
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
Secondary IDs
GO:0006358, GO:0010551
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
regulation of transcription from Pol II promoter | exact |
regulation of transcription from RNA polymerase II promoter, global | related |
global transcription regulation from Pol II promoter | related |
regulation of global transcription from Pol II promoter | related |
regulation of gene-specific transcription from RNA polymerase II promoter | related |
regulation of transcription from RNA polymerase II promoter | exact |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0006357
Child Term | Relationship to GO:0006357 |
---|---|
regulation of transcription initiation by RNA polymerase II
|
is_a |
SWI/SNF complex
|
capable_of_part_of |
brahma complex
|
capable_of_part_of |
DNA-binding transcription factor activity, RNA polymerase II-specific
|
part_of |
npBAF complex
|
capable_of_part_of |
carbon catabolite regulation of transcription from RNA polymerase II promoter
|
is_a |
nBAF complex
|
capable_of_part_of |
esBAF complex
|
capable_of_part_of |
bBAF complex
|
capable_of_part_of |
mBAF complex
|
capable_of_part_of |
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Annotating to transcription processes | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | P26801 | 10116 | CEBPG_RAT | GO:0006355 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | P42224-2 | 9606 | STAT1_HUMAN | GO:0006357 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:10820245 | |
NOT-qualified manual | protein | P53568 | 10090 | CEBPG_MOUSE | GO:0006355 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:1371974 | |
NOT-qualified manual | protein | P9WNV7 | 83332 | DNAJ2_MYCTU | GO:0010468 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:15207487 | |
NOT-qualified manual | protein | Q6QGW5 | 10116 | SRA1_RAT | GO:0006357 | 2 NOT-qualified manual annotations exist with these evidence codes: ECO:0000250, ECO:0000266 from these references: GO_REF:0000024, GO_REF:0000096 | |
NOT-qualified manual | protein | Q8NF99-1 | 9606 | ZN397_HUMAN | GO:0006355 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:12801647 | |
NOT-qualified manual | protein | Q90998 | 9031 | Q90998_CHICK | GO:0010468 | 3 NOT-qualified manual annotations exist with evidence code ECO:0000315 from this reference: PMID:11500982 | |
NOT-qualified manual | protein | Q90999 | 9031 | TGFR2_CHICK | GO:0010468 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:11500982 | |
NOT-qualified manual | protein | Q96AE4 | 9606 | FUBP1_HUMAN | GO:0010468 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000304 from this reference: PMID:8125259 | |
NOT-qualified manual | protein | Q9HD15 | 9606 | SRA1_HUMAN | GO:0006357 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:24486609 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR000580 | TSC22/Bun |
InterPro | IPR000837 | AP-1 transcription factor |
InterPro | IPR007018 | Mediator complex, subunit Med6 |
InterPro | IPR008626 | Mediator complex, subunit Med15, fungi |
InterPro | IPR009244 | Mediator complex, subunit Med7 |
InterPro | IPR009332 | Mediator of RNA polymerase II transcription subunit 22 |
InterPro | IPR009401 | Mediator complex subunit Med13, C-terminal |
InterPro | IPR011363 | Dorsal-related immunity factor Dif |
InterPro | IPR011425 | Mediator of RNA polymerase II transcription subunit 9 |
InterPro | IPR013921 | Mediator complex, subunit Med20 |
Replaces
This term can be used instead of these obsolete terms:
GO Identifier | GO Term Name | Reason |
---|---|---|
GO:0000083 | obsolete regulation of transcription involved in G1/S transition of mitotic cell cycle | consider GO:0006357 |
GO:0000114 | obsolete regulation of transcription involved in G1 phase of mitotic cell cycle | consider GO:0006357 |
GO:0000115 | obsolete regulation of transcription involved in S phase of mitotic cell cycle | consider GO:0006357 |
GO:0000116 | obsolete regulation of transcription involved in G2-phase of mitotic cell cycle | consider GO:0006357 |
GO:0000117 | obsolete regulation of transcription involved in G2/M transition of mitotic cell cycle | consider GO:0006357 |
GO:0007468 | obsolete regulation of rhodopsin gene expression | consider GO:0006357 |
GO:0010672 | obsolete regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle | consider GO:0006357 |
GO:0010767 | obsolete regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage | consider GO:0006357 |
GO:0021882 | obsolete regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment | consider GO:0006357 |
GO:0021909 | obsolete regulation of transcription from RNA polymerase II promoter involved in spinal cord anterior-posterior patterning | consider GO:0006357 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0006357 based on ALL annotations
The top 100 of 10,845 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
regulation of transcription by RNA polymerase II
|
86.83 | 100.00 | 2,244,948 | 2,244,948 |
DNA-binding transcription factor activity, RNA polymerase II-specific
|
78.56 | 55.52 | 1,323,758 | 1,463,243 |
RNA polymerase II cis-regulatory region sequence-specific DNA binding
|
74.41 | 37.85 | 907,139 | 1,058,587 |
nucleus
|
14.90 | 16.28 | 1,706,032 | 9,939,962 |
RNA polymerase II CTD heptapeptide repeat P3 isomerase activity
|
86.78 | 10.10 | 226,762 | 226,896 |
RNA polymerase II CTD heptapeptide repeat P6 isomerase activity
|
86.78 | 10.10 | 226,762 | 226,896 |
peptidyl-prolyl cis-trans isomerase activity
|
42.88 | 9.11 | 225,620 | 456,863 |
RNA polymerase II transcription regulatory region sequence-specific DNA binding
|
69.33 | 9.10 | 209,206 | 262,021 |
regulation of DNA-templated transcription
|
7.64 | 7.66 | 833,361 | 9,472,174 |
positive regulation of transcription by RNA polymerase II
|
26.10 | 6.85 | 182,915 | 608,524 |
Totals | 14620024 | 127488697 |
No co-occurrence statistics for GO:0006357 based on MANUAL annotations
The top 100 of 7,044 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
regulation of transcription by RNA polymerase II
|
29.23 | 100.00 | 44,191 | 44,191 |
DNA-binding transcription factor activity, RNA polymerase II-specific
|
24.24 | 54.25 | 26,990 | 32,551 |
RNA polymerase II cis-regulatory region sequence-specific DNA binding
|
23.10 | 49.58 | 25,233 | 31,938 |
RNA polymerase II transcription regulatory region sequence-specific DNA binding
|
23.43 | 11.97 | 5,449 | 6,799 |
nucleus
|
3.82 | 11.91 | 25,159 | 192,276 |
chromatin
|
9.91 | 7.45 | 3,850 | 11,358 |
DNA-binding transcription factor activity
|
6.60 | 7.36 | 4,348 | 19,270 |
DNA-binding transcription activator activity, RNA polymerase II-specific
|
20.46 | 6.35 | 2,886 | 4,124 |
transcription coregulator activity
|
16.93 | 5.45 | 2,506 | 4,327 |
positive regulation of transcription by RNA polymerase II
|
5.01 | 4.43 | 2,488 | 14,507 |
Totals | 198026 | 965218 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2018-01-20 | Updated | TERM | regulation of transcription by RNA polymerase II |
2018-01-20 | Deleted | DEFINITION | Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. |
2018-01-20 | Added | DEFINITION | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. |
2018-01-20 | Added | SYNONYM | regulation of transcription from RNA polymerase II promoter |
2011-06-05 | Added | SYNONYM | regulation of transcription from RNA polymerase II promoter, global |
2011-06-05 | Added | SYNONYM | global transcription regulation from Pol II promoter |
2011-06-05 | Added | SECONDARY | GO:0006358 (regulation of transcription from RNA polymerase II promoter, global) |
2011-06-05 | Added | SYNONYM | regulation of global transcription from Pol II promoter |
2011-05-15 | Added | SYNONYM | regulation of gene-specific transcription from RNA polymerase II promoter |
2011-05-15 | Added | SECONDARY | GO:0010551 (regulation of gene-specific transcription from RNA polymerase II promoter) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2018-01-20 | Updated | TERM | regulation of transcription by RNA polymerase II |
2005-03-27 | Updated | TERM | regulation of transcription from RNA polymerase II promoter |
2002-07-17 | Updated | TERM | regulation of transcription from Pol II promoter |
2002-07-16 | Updated | TERM | transcription regulation from Pol II promoter |
2002-02-06 | Updated | TERM | transcription regulation, from Pol II promoter |
2001-10-04 | Updated | TERM | transcription regulation, from Pol II promoter |
2001-04-03 | Updated | TERM | transcription regulation from Pol II promoter |
2001-03-30 | Added | TERM | transcription regulation from Pol II promoter |
Timestamp | Action | Category | Detail |
---|---|---|---|
2018-01-20 | Deleted | DEFINITION | Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. |
2018-01-20 | Added | DEFINITION | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. |
2018-01-20 | Added | SYNONYM | regulation of transcription from RNA polymerase II promoter |
2011-06-05 | Added | SYNONYM | regulation of transcription from RNA polymerase II promoter, global |
2011-06-05 | Added | SYNONYM | global transcription regulation from Pol II promoter |
2011-06-05 | Added | SYNONYM | regulation of global transcription from Pol II promoter |
2011-05-15 | Added | SYNONYM | regulation of gene-specific transcription from RNA polymerase II promoter |
2008-05-13 | Added | DEFINITION | Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. |
2008-05-12 | Deleted | DEFINITION | Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. |
2007-08-09 | Deleted | SYNONYM | regulation of transcription from Pol II promoter |
2007-08-09 | Added | SYNONYM | regulation of transcription from Pol II promoter |
2005-03-27 | Added | SYNONYM | regulation of transcription from Pol II promoter |
2005-03-25 | Updated | DEFINITION | Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter. |
2002-11-27 | Added | DEFINITION | Any process that modulates the frequency, rate or extent of transcription from Pol II promoter. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0006355 (regulation of DNA-templated transcription) |
2008-04-01 | Deleted | RELATION | part of GO:0006366 (transcription by RNA polymerase II) |
2008-04-01 | Added | RELATION | regulates GO:0006366 (transcription by RNA polymerase II) |
2008-04-01 | Updated | RELATION | part of GO:0006366 (transcription by RNA polymerase II) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2011-06-05 | Added | SECONDARY | GO:0006358 (regulation of transcription from RNA polymerase II promoter, global) |
2011-05-15 | Added | SECONDARY | GO:0010551 (regulation of gene-specific transcription from RNA polymerase II promoter) |
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