GO:0006888
JSON
endoplasmic reticulum to Golgi vesicle-mediated transport
Biological Process
Definition (GO:0006888 GONUTS page)
The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
Secondary IDs
GO:0048221
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
ER to Golgi vesicle-mediated transport | exact |
anterograde vesicle-mediated transport, ER to Golgi | exact |
anterograde transport, ER to Golgi | exact |
rough endoplasmic reticulum to cis-Golgi transport | exact |
rough ER to cis-Golgi transport | exact |
rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport | exact |
rough ER to cis-Golgi vesicle-mediated transport | exact |
anterograde vesicle-mediated transport, endoplasmic reticulum to Golgi | exact |
endoplasmic reticulum to Golgi transport | exact |
anterograde transport, endoplasmic reticulum to Golgi | exact |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0006888
Child Term | Relationship to GO:0006888 |
---|---|
COPII vesicle uncoating
|
part_of |
regulation of ER to Golgi vesicle-mediated transport
|
regulates |
COPII-coated vesicle budding
|
part_of |
endoplasmic reticulum-derived vesicle fusion with endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane
|
part_of |
endoplasmic reticulum-Golgi intermediate compartment (ERGIC) derived vesicle fusion with Golgi cis cisterna membrane
|
part_of |
vesicle targeting, rough ER to cis-Golgi
|
part_of |
positive regulation of ER to Golgi vesicle-mediated transport
|
positively_regulates |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | Only in Taxon | 131567 | cellular organisms |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A0G2JZY7 | 10116 | A0A0G2JZY7_RAT | GO:0006888 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | F1LQ09 | 10116 | F1LQ09_RAT | GO:0006888 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | O14653 | 9606 | GOSR2_HUMAN | GO:0006888 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:9349823 | |
NOT-qualified manual | protein | O14966 | 9606 | RAB7L_HUMAN | GO:0006888 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:24788816 | |
NOT-qualified manual | protein | O35165 | 10116 | GOSR2_RAT | GO:0006888 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | P05712 | 10116 | RAB2A_RAT | GO:0006888 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | P61019 | 9606 | RAB2A_HUMAN | GO:0006888 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:17684057 | |
NOT-qualified manual | protein | Q0ZHH6 | 10116 | ATLA3_RAT | GO:0006888 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | Q562A0 | 10116 | Q562A0_RAT | GO:0006888 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | Q5I940 | 10090 | Q5I940_MOUSE | GO:0006888 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:16354670 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR005578 | Yif1 family |
InterPro | IPR006722 | Trafficking protein particle complex subunit 2 |
InterPro | IPR006895 | Zinc finger, Sec23/Sec24-type |
InterPro | IPR006896 | Sec23/Sec24, trunk domain |
InterPro | IPR006900 | Sec23/Sec24, helical domain |
InterPro | IPR007277 | Svp26/Tex261 |
InterPro | IPR007528 | RINT-1/Tip20 |
InterPro | IPR016391 | Coatomer subunit alpha |
InterPro | IPR016710 | Emp46/Emp47 |
InterPro | IPR023601 | Golgi SNAP receptor complex, subunit 1 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0006888 based on ALL annotations
The top 100 of 2,371 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
endoplasmic reticulum to Golgi vesicle-mediated transport
|
876.33 | 100.00 | 222,450 | 222,450 |
endoplasmic reticulum exit site
|
729.00 | 17.33 | 39,951 | 48,025 |
vesicle-mediated transport
|
166.74 | 15.84 | 108,090 | 568,096 |
COPII vesicle coat
|
741.37 | 15.31 | 35,042 | 41,421 |
retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
|
372.64 | 14.83 | 41,255 | 97,019 |
COPII-coated vesicle cargo loading
|
854.27 | 14.66 | 32,734 | 33,579 |
COPI vesicle coat
|
688.57 | 14.56 | 33,737 | 42,936 |
COPII-coated ER to Golgi transport vesicle
|
693.08 | 14.07 | 32,511 | 41,107 |
Golgi membrane
|
130.35 | 12.64 | 101,722 | 683,853 |
COPI-coated vesicle membrane
|
643.28 | 11.82 | 27,481 | 37,437 |
Totals | 1957369 | 99447230 |
No co-occurrence statistics for GO:0006888 based on MANUAL annotations
The top 100 of 1,126 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
endoplasmic reticulum to Golgi vesicle-mediated transport
|
208.15 | 100.00 | 6,206 | 6,206 |
COPII-coated ER to Golgi transport vesicle
|
165.41 | 22.99 | 1,517 | 1,909 |
endoplasmic reticulum-Golgi intermediate compartment
|
156.38 | 22.14 | 1,483 | 1,974 |
COPI vesicle coat
|
163.87 | 15.43 | 999 | 1,269 |
intra-Golgi vesicle-mediated transport
|
89.26 | 13.53 | 1,024 | 2,388 |
intracellular protein transport
|
39.69 | 12.67 | 1,702 | 8,925 |
retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
|
75.85 | 12.67 | 1,009 | 2,769 |
Golgi organization
|
69.80 | 12.20 | 999 | 2,979 |
TRAPP complex
|
193.25 | 11.18 | 700 | 754 |
Golgi membrane
|
33.96 | 10.33 | 1,363 | 8,354 |
Totals | 32215 | 534695 |
Change Log
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- Definition / Synonyms
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2021-09-14 | Deleted | SYNONYM | endoplasmic reticulum to Golgi vesicle-mediated transport |
2020-02-28 | Deleted | XREF | MIPS_funcat:20.09.07.03 |
2019-05-04 | Added | XREF | MIPS_funcat:20.09.07.03 |
2018-10-28 | Added | SYNONYM | ER to Golgi vesicle-mediated transport |
2018-10-28 | Updated | TERM | endoplasmic reticulum to Golgi vesicle-mediated transport |
2016-06-22 | Added | RELATION | is a GO:0046907 (intracellular transport) |
2016-03-27 | Deleted | RELATION | is a GO:0016482 (cytosolic transport) |
2015-04-24 | Added | RELATION | occurs in GO:0005737 (cytoplasm) |
2015-01-12 | Added | SYNONYM | anterograde (ER to Golgi) transport |
Timestamp | Action | Category | Detail |
---|---|---|---|
2018-10-28 | Updated | TERM | endoplasmic reticulum to Golgi vesicle-mediated transport |
2006-01-20 | Updated | TERM | ER to Golgi vesicle-mediated transport |
2002-02-06 | Updated | TERM | ER to Golgi transport |
2001-04-03 | Updated | TERM | ER to Golgi transport |
2001-03-30 | Added | TERM | ER to Golgi transport |
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-09-14 | Deleted | SYNONYM | endoplasmic reticulum to Golgi vesicle-mediated transport |
2018-10-28 | Added | SYNONYM | ER to Golgi vesicle-mediated transport |
2015-01-12 | Added | SYNONYM | anterograde (ER to Golgi) transport |
2015-01-12 | Added | SYNONYM | anterograde vesicle-mediated transport, endoplasmic reticulum to Golgi |
2015-01-12 | Added | SYNONYM | anterograde transport, endoplasmic reticulum to Golgi |
2015-01-12 | Added | SYNONYM | anterograde vesicle-mediated transport, ER to Golgi |
2015-01-12 | Added | SYNONYM | anterograde transport, ER to Golgi |
2009-12-19 | Added | SYNONYM | rough ER to cis-Golgi transport |
2009-12-19 | Added | SYNONYM | rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport |
2009-12-19 | Added | SYNONYM | rough ER to cis-Golgi vesicle-mediated transport |
2009-12-19 | Added | SYNONYM | rough endoplasmic reticulum to cis-Golgi transport |
2008-05-13 | Added | DEFINITION | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. |
2008-05-12 | Deleted | DEFINITION | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. |
2007-08-09 | Added | SYNONYM | ER to Golgi transport |
2007-08-09 | Added | SYNONYM | endoplasmic reticulum to Golgi vesicle-mediated transport |
2007-08-09 | Deleted | SYNONYM | endoplasmic reticulum to Golgi vesicle-mediated transport |
2007-08-09 | Deleted | SYNONYM | endoplasmic reticulum to Golgi transport |
2007-08-09 | Deleted | SYNONYM | ER to Golgi transport |
2007-08-09 | Added | SYNONYM | endoplasmic reticulum to Golgi transport |
2006-01-20 | Added | SYNONYM | endoplasmic reticulum to Golgi vesicle-mediated transport |
2006-01-20 | Added | SYNONYM | ER to Golgi transport |
2004-11-09 | Added | SYNONYM | endoplasmic reticulum to Golgi transport |
2004-03-24 | Updated | DEFINITION | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. |
2003-04-04 | Updated | DEFINITION | The directed movement of substances from the ER to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. |
2002-11-27 | Added | DEFINITION | The directed movement of proteins from the ER to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2016-06-22 | Added | RELATION | is a GO:0046907 (intracellular transport) |
2016-03-27 | Deleted | RELATION | is a GO:0016482 (cytosolic transport) |
2015-04-24 | Added | RELATION | occurs in GO:0005737 (cytoplasm) |
2013-02-02 | Added | RELATION | is a GO:0016482 (cytosolic transport) |
2008-04-30 | Deleted | RELATION | part of GO:0045045 (obsolete secretory pathway) |
2008-04-01 | Updated | RELATION | is a GO:0048193 (Golgi vesicle transport) |
2008-04-01 | Updated | RELATION | part of GO:0045045 (obsolete secretory pathway) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-02-28 | Deleted | XREF | MIPS_funcat:20.09.07.03 |
2019-05-04 | Added | XREF | MIPS_funcat:20.09.07.03 |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2009-12-19 | Added | SECONDARY | GO:0048221 (rough ER to cis-Golgi vesicle-mediated transport) |
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