This term is obsolete.
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.

GO:0006996 JSON

organelle organization

Biological Process

Definition (GO:0006996 GONUTS page)

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.

Restrictions

This term should not be used for direct annotation.
See comment below for further information.

Comments

Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.

Secondary IDs

GO:1902589

6,539,737 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
organelle organization and biogenesis related
single-organism organelle organization related
single organism organelle organization exact
organelle organisation exact

Ancestor Chart

Ancestor chart for GO:0006996
Chart options
Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0006996

Child Term Relationship to
GO:0006996
nucleus organization
is_a
regulation of organelle organization
regulates
subsynaptic reticulum organization
is_a
organelle fission
is_a
gas vesicle organization
is_a
fusome organization
is_a
P granule organization
is_a
rhabdomere development
is_a
vesicle organization
is_a
ER body organization
is_a

Cross-references

Database ID Description
InterPro IPR022170 E3 Ubiquitin ligase MUL1-like
InterPro IPR027523 CLU domain containing protein
Reactome R-HSA-1852241

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0006996 based on ALL annotations
The top 100 of 175 co-occurring terms
Co-occurring Term PR S% #Together #Compared
organelle organization
15,242,681.00 100.00 13 13
regulation of JUN kinase activity
15,242,683.00 7.69 1 1
positive regulation of glutamate neurotransmitter secretion in response to membrane depolarization
1,905,335.40 5.00 1 8
acrosomal lumen
846,815.70 3.33 1 18
negative regulation of mitotic centrosome separation
401,123.22 2.00 1 38
positive regulation of synaptic vesicle endocytosis
174,534.53 1.10 3 262
regulation of dopamine uptake involved in synaptic transmission
151,920.42 0.96 3 301
establishment of protein localization to plasma membrane
144,709.00 0.92 3 316
regulation of dopamine receptor signaling pathway
86,116.84 0.53 1 177
negative regulation of dendritic spine morphogenesis
82,392.88 0.51 1 185
Totals 182 1619000
No co-occurrence statistics for GO:0006996 based on MANUAL annotations
The top 100 of 134 co-occurring terms
Co-occurring Term PR S% #Together #Compared
organelle organization
108,579.45 100.00 13 13
ATP-dependent protein folding chaperone
32,573.84 15.00 3 10
regulation of dopamine uptake involved in synaptic transmission
20,358.65 11.54 3 16
regulation of JUN kinase activity
108,579.47 7.69 1 1
establishment of protein localization to plasma membrane
11,232.36 7.69 3 29
negative regulation of mitotic centrosome separation
27,144.87 6.25 1 4
positive regulation of synaptic vesicle endocytosis
7,238.63 5.45 3 45
distal axon
12,064.39 4.76 1 9
organelle assembly
5,170.45 3.77 2 42
synaptic vesicle membrane organization
4,176.13 3.17 2 52
Totals 178 76776

GO Slims

This term is present in the following GO Consortium-maintained GO slims:

GO slim name Total Number of Terms in Slim
goslim_candida 86
goslim_pir 438

Change Log

Timestamp Action Category Detail
2024-12-05 Added XREF Reactome:R-HSA-1852241
2024-04-17 Added SUBSET gocheck_do_not_annotate
2022-04-08 Deleted SUBSET goslim_aspergillus
2017-08-13 Added SECONDARY GO:1902589 (single-organism organelle organization)
2017-08-13 Added SYNONYM single-organism organelle organization
2017-08-13 Added SYNONYM single organism organelle organization
2015-06-25 Deleted RELATION is a GO:0009987 (cellular process)
2013-12-21 Deleted RELATION is a GO:0044763 (single-organism cellular process)
2013-12-21 Added RELATION is a GO:0009987 (cellular process)
2013-04-18 Updated SUBSET goslim_aspergillus
Timestamp Action Category Detail
2008-10-02 Updated TERM organelle organization
2002-02-06 Updated TERM organelle organization and biogenesis
2001-04-03 Updated TERM organelle organization and biogenesis
2001-03-30 Added TERM organelle organization and biogenesis
Timestamp Action Category Detail
2017-08-13 Added SYNONYM single-organism organelle organization
2017-08-13 Added SYNONYM single organism organelle organization
2009-10-07 Deleted SYNONYM organelle organization and biogenesis
2009-10-07 Added SYNONYM organelle organization and biogenesis
2009-06-16 Added DEFINITION A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
2009-06-16 Deleted SYNONYM organelle organisation and biogenesis
2009-06-16 Deleted DEFINITION A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
2009-06-16 Added SYNONYM organelle organisation
2008-10-02 Deleted DEFINITION A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of any organelle within a cell.
2008-10-02 Added DEFINITION A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
2008-10-02 Added SYNONYM organelle organization and biogenesis
2008-05-13 Added DEFINITION A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of any organelle within a cell.
2008-05-12 Deleted DEFINITION A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of any organelle within a cell.
2007-08-09 Added SYNONYM organelle organisation and biogenesis
2007-08-09 Deleted SYNONYM organelle organisation and biogenesis
2007-04-27 Updated DEFINITION A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of any organelle within a cell.
2005-07-22 Added SYNONYM organelle organisation and biogenesis
2004-03-03 Updated DEFINITION The assembly and arrangement of any organelle within a cell.
2002-11-27 Added DEFINITION Assembly and maintenance of any organelle within a cell.
Timestamp Action Category Detail
2015-06-25 Deleted RELATION is a GO:0009987 (cellular process)
2013-12-21 Deleted RELATION is a GO:0044763 (single-organism cellular process)
2013-12-21 Added RELATION is a GO:0009987 (cellular process)
2012-12-23 Added RELATION is a GO:0044763 (single-organism cellular process)
2012-11-17 Deleted RELATION is a GO:0071842 (cellular component organization at cellular level)
2012-11-17 Added RELATION is a GO:0016043 (cellular component organization)
2010-09-12 Deleted RELATION is a GO:0009987 (cellular process)
2010-09-12 Deleted RELATION is a GO:0016043 (cellular component organization)
2010-09-12 Added RELATION is a GO:0071842 (cellular component organization at cellular level)
2009-06-29 Added RELATION is a GO:0009987 (cellular process)
2008-04-01 Updated RELATION is a GO:0016043 (cellular component organization)
Timestamp Action Category Detail
2024-12-05 Added XREF Reactome:R-HSA-1852241
Timestamp Action Category Detail
2024-04-17 Added SUBSET gocheck_do_not_annotate
2022-04-08 Deleted SUBSET goslim_aspergillus
2017-08-13 Added SECONDARY GO:1902589 (single-organism organelle organization)
2013-04-18 Updated SUBSET goslim_aspergillus
2013-04-18 Updated SUBSET goslim_pir
2013-04-18 Updated SUBSET goslim_candida
2011-11-05 Added SUBSET goslim_aspergillus
2010-12-05 Deleted SUBSET goslim_generic
2009-10-07 Deleted SUBSET goslim_pombe
2009-09-06 Deleted SUBSET goslim_yeast
2009-06-20 Added SUBSET goslim_pombe
2008-06-09 Added SUBSET goslim_generic
2008-06-09 Added SUBSET goslim_pir
2008-06-09 Added SUBSET goslim_yeast
2008-06-09 Added SUBSET goslim_candida
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