GO:0007603
JSON
phototransduction, visible light
Biological Process
Definition (GO:0007603 GONUTS page)
The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
| Synonym | Type |
|---|---|
| visual transduction | exact |
| visual cascade | exact |
Ancestor Chart
Ancestor chart for GO:0007603
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0007603
| Child Term | Relationship to GO:0007603 |
|---|---|
|
G protein-coupled opsin signaling pathway
|
part_of |
GO Discussions
The GO editorial group is intending to improve the information provided in this area of the GO. If you would like to be involved in discussions regarding this development activity, please email the GO Consortium. Please note that it is still appropriate to use this term for curation or analysis purpose:
| Ontology Development Project | |
|---|---|
| signalling | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
| Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
|---|---|---|---|---|---|---|---|
| NOT-qualified manual | protein | F4JZY1 | 3702 | CIP1_ARATH | GO:0009416 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:7753789 | |
| NOT-qualified manual | protein | O22914 | 3702 | CP121_ARATH | GO:0009416 | 2 NOT-qualified manual annotations exist with evidence code ECO:0000270 from these references: PMID:15533878, PMID:18974062 | |
| NOT-qualified manual | protein | P08735 | 4577 | G3PC1_MAIZE | GO:0009416 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:2535522 | |
| NOT-qualified manual | protein | P27788 | 4577 | FER3_MAIZE | GO:0009416 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:16668188 | |
| NOT-qualified manual | protein | P29993 | 7227 | ITPR_DROME | GO:0007602 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:28660247 | |
| NOT-qualified manual | protein | Q9C9K2 | 3702 | CP123_ARATH | GO:0009416 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:18974062 |
Cross-references
| Database | ID | Description |
|---|---|---|
| Reactome | R-HSA-2187338 |
Replaces
This term can be used instead of these obsolete terms:
| GO Identifier | GO Term Name | Reason |
|---|---|---|
| GO:0015059 | obsolete blue-sensitive opsin | consider GO:0007603 |
| GO:0015060 | obsolete green-sensitive opsin | consider GO:0007603 |
| GO:0015061 | obsolete red-sensitive opsin | consider GO:0007603 |
| GO:0015062 | obsolete violet-sensitive opsin | consider GO:0007603 |
| GO:0015063 | obsolete long-wave-sensitive opsin | consider GO:0007603 |
| GO:0016016 | obsolete short-wave-sensitive opsin | consider GO:0007603 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0007603 based on ALL annotations
The top 100 of 406 co-occurring terms
| Co-occurring Term | PR | S% | #Together | #Compared |
|---|---|---|---|---|
|
phototransduction, visible light
|
97,661.34 | 100.00 | 2,029 | 2,029 |
|
detection of light stimulus involved in visual perception
|
43,422.02 | 37.36 | 1,421 | 3,196 |
|
sensory perception of sweet taste
|
13,983.00 | 10.50 | 573 | 4,002 |
|
sensory perception of umami taste
|
8,909.12 | 4.76 | 184 | 2,017 |
|
background adaptation
|
40,311.28 | 4.48 | 97 | 235 |
|
neural tissue regeneration
|
31,896.13 | 4.35 | 97 | 297 |
|
negative regulation of glomerular filtration
|
70,095.64 | 4.31 | 89 | 124 |
|
detection of light stimulus
|
21,230.73 | 4.19 | 100 | 460 |
|
mono-olein transacylation activity
|
33,430.23 | 4.05 | 89 | 260 |
|
diolein transacylation activity
|
33,430.23 | 4.05 | 89 | 260 |
| Totals | 16615 | 712044 | ||
No co-occurrence statistics for GO:0007603 based on MANUAL annotations
The top 100 of 280 co-occurring terms
| Co-occurring Term | PR | S% | #Together | #Compared |
|---|---|---|---|---|
|
phototransduction, visible light
|
8,452.29 | 100.00 | 167 | 167 |
|
G protein-coupled acetylcholine receptor signaling pathway
|
5,003.76 | 33.94 | 74 | 125 |
|
entrainment of circadian clock
|
1,924.52 | 17.70 | 74 | 325 |
|
detection of light stimulus involved in visual perception
|
1,963.11 | 12.59 | 36 | 155 |
|
photoreceptor outer segment
|
742.04 | 7.69 | 64 | 729 |
|
sensory perception of sweet taste
|
1,443.07 | 5.96 | 14 | 82 |
|
G-protein beta/gamma-subunit complex binding
|
523.94 | 5.47 | 53 | 855 |
|
rhabdomere microvillus membrane
|
6,761.84 | 4.73 | 8 | 10 |
|
phototransduction, UV
|
3,944.40 | 4.00 | 7 | 15 |
|
G protein-coupled receptor binding
|
355.75 | 3.87 | 54 | 1,283 |
| Totals | 1004 | 20835 | ||
Change Log
- All changes
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- Term
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- Definition / Synonyms
- Definition / Synonyms
- Relationships
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- Cross-references
- Cross-references
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- Other
| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2024-12-05 | Added | XREF | Reactome:R-HSA-2187338 |
| 2012-09-28 | Added | SYNONYM | visual transduction |
| 2012-09-28 | Added | SYNONYM | visual cascade |
| 2009-10-27 | Added | RELATION | is a GO:0009584 (detection of visible light) |
| 2009-10-27 | Deleted | RELATION | part of GO:0009584 (detection of visible light) |
| 2008-05-13 | Added | DEFINITION | The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. |
| 2008-05-12 | Deleted | DEFINITION | The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. |
| 2008-04-01 | Updated | RELATION | is a GO:0007602 (phototransduction) |
| 2008-04-01 | Updated | RELATION | part of GO:0009584 (detection of visible light) |
| 2007-09-10 | Deleted | SYNONYM | blue-sensitive opsin |
| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2002-02-06 | Updated | TERM | phototransduction, visible light |
| 2001-04-03 | Updated | TERM | phototransduction, visible light |
| 2001-03-30 | Added | TERM | phototransduction, visible light |
| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2012-09-28 | Added | SYNONYM | visual transduction |
| 2012-09-28 | Added | SYNONYM | visual cascade |
| 2008-05-13 | Added | DEFINITION | The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. |
| 2008-05-12 | Deleted | DEFINITION | The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. |
| 2007-09-10 | Deleted | SYNONYM | blue-sensitive opsin |
| 2007-09-10 | Deleted | SYNONYM | short-wave-sensitive opsin |
| 2007-09-10 | Deleted | SYNONYM | red-sensitive opsin |
| 2007-09-10 | Deleted | SYNONYM | long-wave-sensitive opsin |
| 2007-09-10 | Deleted | SYNONYM | green-sensitive opsin |
| 2007-09-10 | Deleted | SYNONYM | violet-sensitive opsin |
| 2007-08-09 | Deleted | SYNONYM | violet-sensitive opsin |
| 2007-08-09 | Deleted | SYNONYM | short-wave-sensitive opsin |
| 2007-08-09 | Deleted | SYNONYM | red-sensitive opsin |
| 2007-08-09 | Deleted | SYNONYM | long-wave-sensitive opsin |
| 2007-08-09 | Deleted | SYNONYM | blue-sensitive opsin |
| 2007-08-09 | Added | SYNONYM | violet-sensitive opsin |
| 2007-08-09 | Added | SYNONYM | short-wave-sensitive opsin |
| 2007-08-09 | Added | SYNONYM | red-sensitive opsin |
| 2007-08-09 | Added | SYNONYM | long-wave-sensitive opsin |
| 2007-08-09 | Added | SYNONYM | green-sensitive opsin |
| 2007-08-09 | Added | SYNONYM | blue-sensitive opsin |
| 2007-08-09 | Deleted | SYNONYM | green-sensitive opsin |
| 2005-09-23 | Updated | DEFINITION | The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. |
| 2005-08-10 | Added | SYNONYM | short-wave-sensitive opsin |
| 2005-08-10 | Added | SYNONYM | red-sensitive opsin |
| 2005-08-10 | Added | SYNONYM | long-wave-sensitive opsin |
| 2005-08-10 | Added | SYNONYM | green-sensitive opsin |
| 2005-08-10 | Added | SYNONYM | blue-sensitive opsin |
| 2005-08-10 | Added | SYNONYM | violet-sensitive opsin |
| 2005-05-14 | Updated | DEFINITION | The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal; visible light is defined as having a wavelength within the range 380-780 nm. |
| 2002-11-27 | Updated | DEFINITION | The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal; visible light being defined as having a wavelength within the range 380-780 nm. |
| 2001-08-06 | Added | DEFINITION | The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal; visible light being defined as having a wavelength within the range 380-780nm. |
| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2009-10-27 | Added | RELATION | is a GO:0009584 (detection of visible light) |
| 2009-10-27 | Deleted | RELATION | part of GO:0009584 (detection of visible light) |
| 2008-04-01 | Updated | RELATION | is a GO:0007602 (phototransduction) |
| 2008-04-01 | Updated | RELATION | part of GO:0009584 (detection of visible light) |
| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2024-12-05 | Added | XREF | Reactome:R-HSA-2187338 |
| Timestamp | Action | Category | Detail |
|---|
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