GO:0008295
JSON
spermidine biosynthetic process
Biological Process
Definition (GO:0008295 GONUTS page)
The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
spermidine synthesis | exact |
spermidine anabolism | exact |
spermidine biosynthesis | exact |
spermidine formation | exact |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0008295
Child Term | Relationship to GO:0008295 |
---|---|
regulation of spermidine biosynthetic process
|
regulates |
positive regulation of spermidine biosynthetic process
|
positively_regulates |
negative regulation of spermidine biosynthetic process
|
negatively_regulates |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
IEA Review | protein | A1RV83 | 384616 | ARGDC_PYRIL | GO:0008295 | To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 | IPR003826|IPR016067|IPR017716 |
IEA Review | protein | A2BM05 | 415426 | ARGDC_HYPBU | GO:0008295 | To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 | IPR003826|IPR016067|IPR017716 |
IEA Review | protein | A3DLU8 | 399550 | ARGDC_STAMF | GO:0008295 | To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 | IPR003826|IPR016067|IPR017716 |
IEA Review | protein | A3MTU5 | 410359 | ARGDC_PYRCJ | GO:0008295 | To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 | IPR003826|IPR016067|IPR017716 |
IEA Review | protein | A4WIW6 | 340102 | ARGDC_PYRAR | GO:0008295 | To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 | IPR003826|IPR016067|IPR017716 |
IEA Review | protein | A4YH98 | 399549 | ARGDC_METS5 | GO:0008295 | To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 | IPR003826|IPR016067|IPR017716 |
IEA Review | protein | A8AAB6 | 453591 | ARGDC_IGNH4 | GO:0008295 | To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 | IPR003826|IPR016067|IPR017716 |
IEA Review | protein | B1YD10 | 444157 | ARGDC_PYRNV | GO:0008295 | To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 | IPR003826|IPR016067|IPR017716 |
IEA Review | protein | C3MQN7 | 429572 | ARGDC_SULIL | GO:0008295 | To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 | IPR003826|IPR016067|IPR017716 |
IEA Review | protein | C3MWN7 | 427317 | ARGDC_SULIM | GO:0008295 | To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 | IPR003826|IPR016067|IPR017716 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR001985 | S-adenosylmethionine decarboxylase, eukaryotes |
InterPro | IPR002985 | Arginine decarboxylase |
InterPro | IPR003826 | S-adenosylmethionine decarboxylase family, prokaryotic |
InterPro | IPR009165 | S-adenosylmethionine decarboxylase, bacterial |
InterPro | IPR016067 | S-adenosylmethionine decarboxylase, core |
InterPro | IPR017716 | S-adenosylmethionine decarboxylase proenzyme |
MetaCyc | BSUBPOLYAMSYN-PWY | |
MetaCyc | PWY-6559 | |
MetaCyc | PWY-6834 | |
MetaCyc | PWY2PN3-14 |
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
has_primary_output | CHEBI | CHEBI:57834 | spermidine(3+) |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0008295 based on ALL annotations
The top 100 of 362 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
spermidine biosynthetic process
|
2,668.86 | 100.00 | 73,042 | 73,042 |
spermidine synthase activity
|
2,542.86 | 36.04 | 26,802 | 28,130 |
adenosylmethionine decarboxylase activity
|
2,663.21 | 32.88 | 24,032 | 24,083 |
polyamine biosynthetic process
|
755.12 | 18.98 | 26,702 | 94,374 |
arginine decarboxylase activity
|
1,338.11 | 16.29 | 14,197 | 28,316 |
arginine catabolic process
|
652.97 | 12.14 | 14,180 | 57,957 |
nor-spermidine biosynthetic process
|
2,668.51 | 10.34 | 7,549 | 7,550 |
spermine biosynthetic process
|
2,125.50 | 8.09 | 6,032 | 7,574 |
putrescine biosynthetic process from arginine
|
684.64 | 7.72 | 7,268 | 28,332 |
diaminopimelate decarboxylase activity
|
317.18 | 5.85 | 7,551 | 63,536 |
Totals | 383879 | 198715647 |
No co-occurrence statistics for GO:0008295 based on MANUAL annotations
The top 52 of 52 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
spermidine biosynthetic process
|
2,460.57 | 100.00 | 525 | 525 |
adenosylmethionine decarboxylase activity
|
2,425.29 | 51.98 | 275 | 279 |
spermidine synthase activity
|
2,430.07 | 45.27 | 239 | 242 |
spermine biosynthetic process
|
2,094.46 | 43.31 | 246 | 289 |
putrescine binding
|
1,813.05 | 2.64 | 14 | 19 |
nor-spermidine biosynthetic process
|
2,460.57 | 1.14 | 6 | 6 |
pantothenate biosynthetic process
|
47.69 | 0.64 | 5 | 258 |
carboxy-lyase activity
|
32.52 | 0.62 | 6 | 454 |
cytosol
|
14.96 | 0.61 | 512 | 84,217 |
polyamine biosynthetic process
|
61.13 | 0.59 | 4 | 161 |
Totals | 1931 | 851952 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-02 | Deleted | XREF | MetaCyc:POLYAMINSYN3-PWY |
2024-09-02 | Added | XREF | MetaCyc:PWY-6834 |
2024-09-02 | Added | XREF | MetaCyc:PWY2PN3-14 |
2024-09-02 | Added | XREF | MetaCyc:PWY-6559 |
2008-05-13 | Added | DEFINITION | The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. |
2008-05-12 | Deleted | DEFINITION | The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. |
2008-04-01 | Updated | RELATION | is a GO:0008216 (spermidine metabolic process) |
2008-04-01 | Updated | RELATION | is a GO:0006596 (polyamine biosynthetic process) |
2007-08-09 | Deleted | SYNONYM | spermidine anabolism |
2007-08-09 | Deleted | SYNONYM | spermidine formation |
Timestamp | Action | Category | Detail |
---|---|---|---|
2007-01-15 | Updated | TERM | spermidine biosynthetic process |
2002-02-06 | Updated | TERM | spermidine biosynthesis |
2001-04-03 | Updated | TERM | spermidine biosynthesis |
2001-03-30 | Added | TERM | spermidine biosynthesis |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-05-13 | Added | DEFINITION | The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. |
2008-05-12 | Deleted | DEFINITION | The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. |
2007-08-09 | Deleted | SYNONYM | spermidine anabolism |
2007-08-09 | Deleted | SYNONYM | spermidine formation |
2007-08-09 | Deleted | SYNONYM | spermidine synthesis |
2007-08-09 | Deleted | SYNONYM | spermidine biosynthesis |
2007-08-09 | Added | SYNONYM | spermidine anabolism |
2007-08-09 | Added | SYNONYM | spermidine biosynthesis |
2007-08-09 | Added | SYNONYM | spermidine formation |
2007-08-09 | Added | SYNONYM | spermidine synthesis |
2007-01-15 | Added | SYNONYM | spermidine biosynthesis |
2006-05-04 | Updated | DEFINITION | The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. |
2005-08-10 | Added | SYNONYM | spermidine anabolism |
2005-08-10 | Added | SYNONYM | spermidine synthesis |
2005-08-10 | Added | SYNONYM | spermidine formation |
2002-11-27 | Added | DEFINITION | The formation from simpler components of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0008216 (spermidine metabolic process) |
2008-04-01 | Updated | RELATION | is a GO:0006596 (polyamine biosynthetic process) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-02 | Deleted | XREF | MetaCyc:POLYAMINSYN3-PWY |
2024-09-02 | Added | XREF | MetaCyc:PWY-6834 |
2024-09-02 | Added | XREF | MetaCyc:PWY2PN3-14 |
2024-09-02 | Added | XREF | MetaCyc:PWY-6559 |
2003-10-27 | Added | XREF | MetaCyc:BSUBPOLYAMSYN-PWY |
2003-10-27 | Added | XREF | MetaCyc:POLYAMINSYN3-PWY |
Timestamp | Action | Category | Detail |
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