This term is obsolete.

GO:0008295 JSON

spermidine biosynthetic process

Biological Process

Definition (GO:0008295 GONUTS page)

The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.

73,413 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
spermidine synthesis exact
spermidine anabolism exact
spermidine biosynthesis exact
spermidine formation exact

Ancestor Chart

Ancestor chart for GO:0008295
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Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0008295

Child Term Relationship to
GO:0008295
regulation of spermidine biosynthetic process
regulates
positive regulation of spermidine biosynthetic process
positively_regulates
negative regulation of spermidine biosynthetic process
negatively_regulates

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
IEA Review protein A1RV83 384616 ARGDC_PYRIL GO:0008295 To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 IPR003826|IPR016067|IPR017716
IEA Review protein A2BM05 415426 ARGDC_HYPBU GO:0008295 To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 IPR003826|IPR016067|IPR017716
IEA Review protein A3DLU8 399550 ARGDC_STAMF GO:0008295 To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 IPR003826|IPR016067|IPR017716
IEA Review protein A3MTU5 410359 ARGDC_PYRCJ GO:0008295 To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 IPR003826|IPR016067|IPR017716
IEA Review protein A4WIW6 340102 ARGDC_PYRAR GO:0008295 To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 IPR003826|IPR016067|IPR017716
IEA Review protein A4YH98 399549 ARGDC_METS5 GO:0008295 To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 IPR003826|IPR016067|IPR017716
IEA Review protein A8AAB6 453591 ARGDC_IGNH4 GO:0008295 To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 IPR003826|IPR016067|IPR017716
IEA Review protein B1YD10 444157 ARGDC_PYRNV GO:0008295 To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 IPR003826|IPR016067|IPR017716
IEA Review protein C3MQN7 429572 ARGDC_SULIL GO:0008295 To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 IPR003826|IPR016067|IPR017716
IEA Review protein C3MWN7 427317 ARGDC_SULIM GO:0008295 To remove over-annotation from InterPro entries; InterPro:IPR003826|InterPro:IPR016067|InterPro:IPR017716. Details in PMID:18650422. Reported by InterPro on 20/3/2013 IPR003826|IPR016067|IPR017716

Cross-references

Database ID Description
InterPro IPR001985 S-adenosylmethionine decarboxylase, eukaryotes
InterPro IPR002985 Arginine decarboxylase
InterPro IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic
InterPro IPR009165 S-adenosylmethionine decarboxylase, bacterial
InterPro IPR016067 S-adenosylmethionine decarboxylase, core
InterPro IPR017716 S-adenosylmethionine decarboxylase proenzyme
MetaCyc BSUBPOLYAMSYN-PWY
MetaCyc PWY-6559
MetaCyc PWY-6834
MetaCyc PWY2PN3-14

Cross-Ontology Relations

Relation Other Ontology ID Term
has_primary_output CHEBI CHEBI:57834 spermidine(3+)

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0008295 based on ALL annotations
The top 100 of 362 co-occurring terms
Co-occurring Term PR S% #Together #Compared
spermidine biosynthetic process
2,668.86 100.00 73,042 73,042
spermidine synthase activity
2,542.86 36.04 26,802 28,130
adenosylmethionine decarboxylase activity
2,663.21 32.88 24,032 24,083
polyamine biosynthetic process
755.12 18.98 26,702 94,374
arginine decarboxylase activity
1,338.11 16.29 14,197 28,316
arginine catabolic process
652.97 12.14 14,180 57,957
nor-spermidine biosynthetic process
2,668.51 10.34 7,549 7,550
spermine biosynthetic process
2,125.50 8.09 6,032 7,574
putrescine biosynthetic process from arginine
684.64 7.72 7,268 28,332
diaminopimelate decarboxylase activity
317.18 5.85 7,551 63,536
Totals 383879 198715647
No co-occurrence statistics for GO:0008295 based on MANUAL annotations
The top 52 of 52 co-occurring terms
Co-occurring Term PR S% #Together #Compared
spermidine biosynthetic process
2,460.57 100.00 525 525
adenosylmethionine decarboxylase activity
2,425.29 51.98 275 279
spermidine synthase activity
2,430.07 45.27 239 242
spermine biosynthetic process
2,094.46 43.31 246 289
putrescine binding
1,813.05 2.64 14 19
nor-spermidine biosynthetic process
2,460.57 1.14 6 6
pantothenate biosynthetic process
47.69 0.64 5 258
carboxy-lyase activity
32.52 0.62 6 454
cytosol
14.96 0.61 512 84,217
polyamine biosynthetic process
61.13 0.59 4 161
Totals 1931 851952

Change Log

Timestamp Action Category Detail
2024-09-02 Deleted XREF MetaCyc:POLYAMINSYN3-PWY
2024-09-02 Added XREF MetaCyc:PWY-6834
2024-09-02 Added XREF MetaCyc:PWY2PN3-14
2024-09-02 Added XREF MetaCyc:PWY-6559
2008-05-13 Added DEFINITION The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
2008-05-12 Deleted DEFINITION The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
2008-04-01 Updated RELATION is a GO:0008216 (spermidine metabolic process)
2008-04-01 Updated RELATION is a GO:0006596 (polyamine biosynthetic process)
2007-08-09 Deleted SYNONYM spermidine anabolism
2007-08-09 Deleted SYNONYM spermidine formation
Timestamp Action Category Detail
2007-01-15 Updated TERM spermidine biosynthetic process
2002-02-06 Updated TERM spermidine biosynthesis
2001-04-03 Updated TERM spermidine biosynthesis
2001-03-30 Added TERM spermidine biosynthesis
Timestamp Action Category Detail
2008-05-13 Added DEFINITION The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
2008-05-12 Deleted DEFINITION The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
2007-08-09 Deleted SYNONYM spermidine anabolism
2007-08-09 Deleted SYNONYM spermidine formation
2007-08-09 Deleted SYNONYM spermidine synthesis
2007-08-09 Deleted SYNONYM spermidine biosynthesis
2007-08-09 Added SYNONYM spermidine anabolism
2007-08-09 Added SYNONYM spermidine biosynthesis
2007-08-09 Added SYNONYM spermidine formation
2007-08-09 Added SYNONYM spermidine synthesis
2007-01-15 Added SYNONYM spermidine biosynthesis
2006-05-04 Updated DEFINITION The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
2005-08-10 Added SYNONYM spermidine anabolism
2005-08-10 Added SYNONYM spermidine synthesis
2005-08-10 Added SYNONYM spermidine formation
2002-11-27 Added DEFINITION The formation from simpler components of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0008216 (spermidine metabolic process)
2008-04-01 Updated RELATION is a GO:0006596 (polyamine biosynthetic process)
Timestamp Action Category Detail
2024-09-02 Deleted XREF MetaCyc:POLYAMINSYN3-PWY
2024-09-02 Added XREF MetaCyc:PWY-6834
2024-09-02 Added XREF MetaCyc:PWY2PN3-14
2024-09-02 Added XREF MetaCyc:PWY-6559
2003-10-27 Added XREF MetaCyc:BSUBPOLYAMSYN-PWY
2003-10-27 Added XREF MetaCyc:POLYAMINSYN3-PWY
Timestamp Action Category Detail
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