GO:0009271
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phage shock
Biological Process
Definition (GO:0009271 GONUTS page)
A response by bacterial cells to a variety of stresses including filamentous phage infection, mislocalization of envelope proteins, extremes of temperature, osmolarity or ethanol concentration, and the presence of proton ionophores such as carbonylcyanide m-chlorophenylhydrazone (CCCP), that involves expression of the phage shock protein operon, and acts to protect the bacterial cells from damage. PMID:15485810 PMID:16045608
Ancestor Chart
GO Discussions
The GO editorial group is intending to improve the information provided in this area of the GO. If you would like to be involved in discussions regarding this development activity, please email the GO Consortium. Please note that it is still appropriate to use this term for curation or analysis purpose:
Ontology Development Project | |
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Viral Processes | Link |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0009271 | phage shock | Only in Taxon | 2 | Bacteria |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | Q9SST3 | 3702 | Q9SST3_ARATH | GO:0009615 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:14666423 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR009554 | Phage shock protein B |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0009271 based on ALL annotations
The top 21 of 21 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
phage shock
|
25,260.96 | 100.00 | 7,717 | 7,717 |
cytosol
|
8.40 | 0.03 | 4,566 | 13,724,995 |
regulation of DNA-templated transcription
|
8.40 | 0.03 | 3,150 | 9,472,174 |
regulation of cellular response to stress
|
45.72 | 0.02 | 2 | 1,105 |
cell pole
|
161.93 | 0.01 | 1 | 156 |
protein binding
|
3.62 | 0.01 | 6 | 41,817 |
membrane
|
1.46 | 0.01 | 2,949 | 51,131,591 |
molecular_function
|
0.72 | 0.00 | 2 | 69,707 |
cellular_component
|
0.40 | 0.00 | 1 | 62,739 |
biological_process
|
0.38 | 0.00 | 1 | 66,439 |
Totals | 18450 | 158507184 |
No co-occurrence statistics for GO:0009271 based on MANUAL annotations
The top 12 of 12 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
phage shock
|
184,542.70 | 100.00 | 7 | 7 |
cell pole
|
4,501.04 | 2.13 | 1 | 41 |
regulation of cellular response to stress
|
4,100.95 | 1.96 | 1 | 45 |
cytoplasmic side of plasma membrane
|
140.87 | 0.08 | 1 | 1,310 |
phospholipid binding
|
86.76 | 0.05 | 1 | 2,127 |
response to heat
|
69.90 | 0.04 | 1 | 2,640 |
transcription regulator complex
|
53.71 | 0.03 | 1 | 3,436 |
identical protein binding
|
21.02 | 0.01 | 1 | 8,780 |
cytosol
|
10.96 | 0.01 | 5 | 84,217 |
protein binding
|
8.83 | 0.00 | 2 | 41,817 |
Totals | 24 | 297988 |
Change Log
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- Definition / Synonyms
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Deleted | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
2019-09-29 | Added | CONSTRAINT | in_taxon NCBITaxon:2 (Bacteria) |
2019-09-23 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
2015-06-25 | Deleted | RELATION | is a GO:0009615 (response to virus) |
2014-06-05 | Added | RELATION | is a GO:0009615 (response to virus) |
2014-02-17 | Deleted | RELATION | is a GO:0009615 (response to virus) |
2014-01-29 | Added | RELATION | is a GO:0098586 (cellular response to virus) |
2008-05-13 | Added | DEFINITION | A response by bacterial cells to a variety of stresses including filamentous phage infection, mislocalization of envelope proteins, extremes of temperature, osmolarity or ethanol concentration, and the presence of proton ionophores such as carbonylcyanide m-chlorophenylhydrazone (CCCP), that involves expression of the phage shock protein operon, and acts to protect the bacterial cells from damage. |
2008-05-12 | Deleted | DEFINITION | A response by bacterial cells to a variety of stresses including filamentous phage infection, mislocalization of envelope proteins, extremes of temperature, osmolarity or ethanol concentration, and the presence of proton ionophores such as carbonylcyanide m-chlorophenylhydrazone (CCCP), that involves expression of the phage shock protein operon, and acts to protect the bacterial cells from damage. |
2008-04-01 | Updated | RELATION | is a GO:0009615 (response to virus) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2002-02-06 | Updated | TERM | phage shock |
2001-04-03 | Updated | TERM | phage shock |
2001-03-30 | Added | TERM | phage shock |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-05-13 | Added | DEFINITION | A response by bacterial cells to a variety of stresses including filamentous phage infection, mislocalization of envelope proteins, extremes of temperature, osmolarity or ethanol concentration, and the presence of proton ionophores such as carbonylcyanide m-chlorophenylhydrazone (CCCP), that involves expression of the phage shock protein operon, and acts to protect the bacterial cells from damage. |
2008-05-12 | Deleted | DEFINITION | A response by bacterial cells to a variety of stresses including filamentous phage infection, mislocalization of envelope proteins, extremes of temperature, osmolarity or ethanol concentration, and the presence of proton ionophores such as carbonylcyanide m-chlorophenylhydrazone (CCCP), that involves expression of the phage shock protein operon, and acts to protect the bacterial cells from damage. |
2006-09-19 | Updated | DEFINITION | A response by bacterial cells to a variety of stresses including filamentous phage infection, mislocalization of envelope proteins, extremes of temperature, osmolarity or ethanol concentration, and the presence of proton ionophores such as carbonylcyanide m-chlorophenylhydrazone (CCCP), that involves expression of the phage shock protein operon, and acts to protect the bacterial cells from damage. |
2005-02-18 | Updated | DEFINITION | A response by bacterial cells to phage infection that involves expression of the phage shock protein operon, and acts to protect the bacterial cells from damage. |
2005-02-17 | Added | DEFINITION | A response by bacterial cells to phage infection that involves expression of the phage shock protein operon, and acts to protect the bacterial cells from damage |
Timestamp | Action | Category | Detail |
---|---|---|---|
2015-06-25 | Deleted | RELATION | is a GO:0009615 (response to virus) |
2014-06-05 | Added | RELATION | is a GO:0009615 (response to virus) |
2014-02-17 | Deleted | RELATION | is a GO:0009615 (response to virus) |
2014-01-29 | Added | RELATION | is a GO:0098586 (cellular response to virus) |
2008-04-01 | Updated | RELATION | is a GO:0009615 (response to virus) |
2008-04-01 | Updated | RELATION | is a GO:0006950 (response to stress) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Deleted | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
2019-09-29 | Added | CONSTRAINT | in_taxon NCBITaxon:2 (Bacteria) |
2019-09-23 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
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