GO:0009532
JSON
plastid stroma
Cellular Component
Definition (GO:0009532 GONUTS page)
The proteinaceous ground substance of plastids.
Ancestor Chart
Ancestor chart for GO:0009532
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0009532
Child Term | Relationship to GO:0009532 |
---|---|
chloroplast stroma
|
is_a |
gerontoplast stroma
|
is_a |
proplastid stroma
|
is_a |
plastid acetyl-CoA carboxylase complex
|
part_of |
leucoplast stroma
|
is_a |
chromoplast stroma
|
is_a |
plastid ribosome
|
part_of |
cyanelle stroma
|
is_a |
elaioplast stroma
|
is_a |
plastid nucleoid
|
part_of |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0009532 | plastid stroma | Never in Taxon | 2 | Bacteria | |
GO:0009532 | plastid stroma | Never in Taxon | 2157 | Archaea | |
GO:0009532 | plastid stroma | Never in Taxon | 28009 | Choanoflagellata | |
GO:0009532 | plastid stroma | Never in Taxon | 33208 | Metazoa | |
GO:0009532 | plastid stroma | Never in Taxon | 4751 | Fungi | |
GO:0009532 | plastid stroma | Never in Taxon | 554915 | Amoebozoa | |
GO:0009532 | plastid stroma | Only in Taxon | 131567 | cellular organisms |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A096MJ18 | 10116 | A0A096MJ18_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A096MK97 | 10116 | A0A096MK97_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0D1E8X3 | 237631 | A0A0D1E8X3_USTMA | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A0G2JZ79 | 10116 | SIR1_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1L8G9S0 | 8355 | A0A1L8G9S0_XENLA | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A1S4L3K3 | 6945 | A0A1S4L3K3_IXOSC | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A1W2Q633 | 10116 | A0A1W2Q633_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A2K5ATM2 | 6239 | A0A2K5ATM2_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2K5ATM9 | 6239 | A0A2K5ATM9_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2K5ATP6 | 6239 | A0A2K5ATP6_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 |
Cross-references
Database | ID | Description |
---|---|---|
UniProtKB-SubCell | SL-0215 | Plastid stroma |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0009532 based on ALL annotations
The top 100 of 230 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
plastid stroma
|
16,738.69 | 100.00 | 11,646 | 11,646 |
endopeptidase Clp complex
|
2,078.88 | 12.35 | 11,146 | 89,745 |
ATPase binding
|
1,537.22 | 9.15 | 11,146 | 121,368 |
chloroplast stroma
|
1,344.53 | 7.54 | 6,414 | 79,851 |
protein quality control for misfolded or incompletely synthesized proteins
|
1,160.05 | 6.91 | 11,146 | 160,829 |
ATP-dependent peptidase activity
|
684.09 | 4.09 | 11,526 | 282,025 |
chloroplastic endopeptidase Clp complex
|
12,350.88 | 1.30 | 152 | 206 |
serine-type endopeptidase activity
|
157.93 | 0.94 | 11,522 | 1,221,156 |
serine-type peptidase activity
|
156.59 | 0.93 | 10,047 | 1,073,972 |
chloroplast organization
|
160.92 | 0.52 | 129 | 13,418 |
Totals | 107319 | 45757433 |
No co-occurrence statistics for GO:0009532 based on MANUAL annotations
The top 73 of 73 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
plastid stroma
|
61,514.24 | 100.00 | 21 | 21 |
chloroplastic endopeptidase Clp complex
|
46,135.68 | 26.09 | 6 | 8 |
positive regulation of stomatal opening
|
20,504.75 | 4.35 | 1 | 3 |
Tic complex
|
20,504.75 | 4.35 | 1 | 3 |
plastid inner membrane
|
15,378.56 | 4.17 | 1 | 4 |
Ycf2/FtsHi complex
|
8,787.75 | 3.70 | 1 | 7 |
chloroplast protein-transporting ATPase activity
|
8,787.75 | 3.70 | 1 | 7 |
stromule
|
3,075.71 | 3.39 | 2 | 40 |
plastid outer membrane
|
6,151.42 | 3.33 | 1 | 10 |
regulation of chlorophyll biosynthetic process
|
3,618.48 | 2.70 | 1 | 17 |
Totals | 208 | 619122 |
Change Log
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- Definition / Synonyms
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:28009 (Choanoflagellata) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:33208 (Metazoa) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:2 (Bacteria) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:2157 (Archaea) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:554915 (Amoebozoa) |
2019-09-12 | Added | RELATION | is a GO:0110165 (cellular anatomical structure) |
2019-09-12 | Deleted | RELATION | is a GO:0044435 (obsolete plastid part) |
2019-09-12 | Added | RELATION | part of GO:0009536 (plastid) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2002-02-06 | Updated | TERM | plastid stroma |
2001-04-03 | Updated | TERM | plastid stroma |
2001-03-30 | Added | TERM | plastid stroma |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-05-13 | Added | DEFINITION | The proteinaceous ground substance of plastids. |
2008-05-12 | Deleted | DEFINITION | The proteinaceous ground substance of plastids. |
2001-08-06 | Added | DEFINITION | The proteinaceous ground substance of plastids. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2019-09-12 | Added | RELATION | is a GO:0110165 (cellular anatomical structure) |
2019-09-12 | Deleted | RELATION | is a GO:0044435 (obsolete plastid part) |
2019-09-12 | Added | RELATION | part of GO:0009536 (plastid) |
2008-04-01 | Updated | RELATION | is a GO:0044435 (obsolete plastid part) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:28009 (Choanoflagellata) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:33208 (Metazoa) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:2 (Bacteria) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:2157 (Archaea) |
2023-11-01 | Added | CONSTRAINT | never_in_taxon NCBITaxon:554915 (Amoebozoa) |
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