This term is obsolete.

GO:0009532 JSON

plastid stroma

Cellular Component

Definition (GO:0009532 GONUTS page)

The proteinaceous ground substance of plastids.

99,153 annotations

Ancestor Chart

Ancestor chart for GO:0009532
Chart options
Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0009532

Child Term Relationship to
GO:0009532
chloroplast stroma
is_a
gerontoplast stroma
is_a
proplastid stroma
is_a
plastid acetyl-CoA carboxylase complex
part_of
leucoplast stroma
is_a
chromoplast stroma
is_a
plastid ribosome
part_of
cyanelle stroma
is_a
elaioplast stroma
is_a
plastid nucleoid
part_of

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0009532 plastid stroma Never in Taxon 2 Bacteria
GO:0009532 plastid stroma Never in Taxon 2157 Archaea
GO:0009532 plastid stroma Never in Taxon 28009 Choanoflagellata
GO:0009532 plastid stroma Never in Taxon 33208 Metazoa
GO:0009532 plastid stroma Never in Taxon 4751 Fungi
GO:0009532 plastid stroma Never in Taxon 554915 Amoebozoa
GO:0009532 plastid stroma Only in Taxon 131567 cellular organisms

More information on taxon constraints in GO is available here

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A0A096MJ18 10116 A0A096MJ18_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A096MK97 10116 A0A096MK97_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0D1E8X3 237631 A0A0D1E8X3_USTMA GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A0G2JZ79 10116 SIR1_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1L8G9S0 8355 A0A1L8G9S0_XENLA GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A1S4L3K3 6945 A0A1S4L3K3_IXOSC GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A1W2Q633 10116 A0A1W2Q633_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A2K5ATM2 6239 A0A2K5ATM2_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A2K5ATM9 6239 A0A2K5ATM9_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A2K5ATP6 6239 A0A2K5ATP6_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033

Cross-references

Database ID Description
UniProtKB-SubCell SL-0215 Plastid stroma

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0009532 based on ALL annotations
The top 100 of 230 co-occurring terms
Co-occurring Term PR S% #Together #Compared
plastid stroma
16,738.69 100.00 11,646 11,646
endopeptidase Clp complex
2,078.88 12.35 11,146 89,745
ATPase binding
1,537.22 9.15 11,146 121,368
chloroplast stroma
1,344.53 7.54 6,414 79,851
protein quality control for misfolded or incompletely synthesized proteins
1,160.05 6.91 11,146 160,829
ATP-dependent peptidase activity
684.09 4.09 11,526 282,025
chloroplastic endopeptidase Clp complex
12,350.88 1.30 152 206
serine-type endopeptidase activity
157.93 0.94 11,522 1,221,156
serine-type peptidase activity
156.59 0.93 10,047 1,073,972
chloroplast organization
160.92 0.52 129 13,418
Totals 107319 45757433
No co-occurrence statistics for GO:0009532 based on MANUAL annotations
The top 73 of 73 co-occurring terms
Co-occurring Term PR S% #Together #Compared
plastid stroma
61,514.24 100.00 21 21
chloroplastic endopeptidase Clp complex
46,135.68 26.09 6 8
positive regulation of stomatal opening
20,504.75 4.35 1 3
Tic complex
20,504.75 4.35 1 3
plastid inner membrane
15,378.56 4.17 1 4
Ycf2/FtsHi complex
8,787.75 3.70 1 7
chloroplast protein-transporting ATPase activity
8,787.75 3.70 1 7
stromule
3,075.71 3.39 2 40
plastid outer membrane
6,151.42 3.33 1 10
regulation of chlorophyll biosynthetic process
3,618.48 2.70 1 17
Totals 208 619122

Change Log

Timestamp Action Category Detail
2024-03-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:28009 (Choanoflagellata)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:33208 (Metazoa)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:4751 (Fungi)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:2 (Bacteria)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:2157 (Archaea)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:554915 (Amoebozoa)
2019-09-12 Added RELATION is a GO:0110165 (cellular anatomical structure)
2019-09-12 Deleted RELATION is a GO:0044435 (obsolete plastid part)
2019-09-12 Added RELATION part of GO:0009536 (plastid)
Timestamp Action Category Detail
2002-02-06 Updated TERM plastid stroma
2001-04-03 Updated TERM plastid stroma
2001-03-30 Added TERM plastid stroma
Timestamp Action Category Detail
2008-05-13 Added DEFINITION The proteinaceous ground substance of plastids.
2008-05-12 Deleted DEFINITION The proteinaceous ground substance of plastids.
2001-08-06 Added DEFINITION The proteinaceous ground substance of plastids.
Timestamp Action Category Detail
2019-09-12 Added RELATION is a GO:0110165 (cellular anatomical structure)
2019-09-12 Deleted RELATION is a GO:0044435 (obsolete plastid part)
2019-09-12 Added RELATION part of GO:0009536 (plastid)
2008-04-01 Updated RELATION is a GO:0044435 (obsolete plastid part)
Timestamp Action Category Detail
Timestamp Action Category Detail
2024-03-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:28009 (Choanoflagellata)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:33208 (Metazoa)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:4751 (Fungi)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:2 (Bacteria)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:2157 (Archaea)
2023-11-01 Added CONSTRAINT never_in_taxon NCBITaxon:554915 (Amoebozoa)
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