GO:0009585
JSON
red, far-red light phototransduction
Biological Process
Definition (GO:0009585 GONUTS page)
The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
phytochrome signaling pathway | broad |
red-sensitive opsin | related |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0009585
Child Term | Relationship to GO:0009585 |
---|---|
red or far-red light photoreceptor activity
|
part_of |
GO Discussions
The GO editorial group is intending to improve the information provided in this area of the GO. If you would like to be involved in discussions regarding this development activity, please email the GO Consortium. Please note that it is still appropriate to use this term for curation or analysis purpose:
Ontology Development Project | |
---|---|
signalling | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | F4JZY1 | 3702 | CIP1_ARATH | GO:0009416 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:7753789 | |
NOT-qualified manual | protein | O22914 | 3702 | CP121_ARATH | GO:0009416 | 2 NOT-qualified manual annotations exist with evidence code ECO:0000270 from these references: PMID:15533878, PMID:18974062 | |
NOT-qualified manual | protein | P08735 | 4577 | G3PC1_MAIZE | GO:0009416 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:2535522 | |
NOT-qualified manual | protein | P27788 | 4577 | FER3_MAIZE | GO:0009416 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:16668188 | |
NOT-qualified manual | protein | P29993 | 7227 | ITPR_DROME | GO:0007602 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:28660247 | |
NOT-qualified manual | protein | Q9C9K2 | 3702 | CP123_ARATH | GO:0009416 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:18974062 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR012129 | Phytochrome A/B/C/D/E |
UniProtKB-KW | KW-0607 | Phytochrome signaling pathway |
Replaces
This term can be used instead of these obsolete terms:
GO Identifier | GO Term Name | Reason |
---|---|---|
GO:0015061 | obsolete red-sensitive opsin | consider GO:0009585 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0009585 based on ALL annotations
The top 100 of 275 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
red, far-red light phototransduction
|
89,094.52 | 100.00 | 2,188 | 2,188 |
detection of visible light
|
7,880.70 | 8.76 | 1,981 | 22,396 |
photoreceptor activity
|
2,343.57 | 2.62 | 1,982 | 75,349 |
red or far-red light signaling pathway
|
3,296.24 | 2.12 | 103 | 2,784 |
photoperiodism, flowering
|
10,335.79 | 1.95 | 50 | 431 |
response to far red light
|
3,079.46 | 1.29 | 44 | 1,273 |
regulation of photomorphogenesis
|
2,054.59 | 1.09 | 44 | 1,908 |
protein homodimerization activity
|
860.76 | 0.97 | 1,979 | 204,841 |
negative regulation of leaf senescence
|
14,726.37 | 0.87 | 20 | 121 |
leaf development
|
547.39 | 0.47 | 42 | 6,836 |
Totals | 12751 | 5336537 |
No co-occurrence statistics for GO:0009585 based on MANUAL annotations
The top 100 of 123 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
red, far-red light phototransduction
|
39,145.42 | 100.00 | 33 | 33 |
red or far-red light photoreceptor activity
|
19,572.71 | 8.33 | 3 | 6 |
blue light signaling pathway
|
5,105.93 | 5.66 | 3 | 23 |
red or far-red light signaling pathway
|
1,505.59 | 3.01 | 4 | 104 |
response to light intensity
|
2,007.46 | 2.86 | 2 | 39 |
trichome papilla formation
|
13,048.48 | 2.86 | 1 | 3 |
jasmonoyl-L-amino acid ligase activity
|
7,829.09 | 2.70 | 1 | 5 |
response to far red light
|
1,283.46 | 2.65 | 4 | 122 |
response to low fluence blue light stimulus by blue low-fluence system
|
4,893.18 | 2.50 | 1 | 8 |
rod bipolar cell differentiation
|
4,893.18 | 2.50 | 1 | 8 |
Totals | 156 | 51663 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2009-10-27 | Added | RELATION | part of GO:0010017 (red or far-red light signaling pathway) |
2008-05-13 | Added | DEFINITION | The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm. |
2008-05-12 | Deleted | DEFINITION | The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm. |
2008-04-01 | Updated | RELATION | is a GO:0007602 (phototransduction) |
2007-08-09 | Deleted | SYNONYM | phytochrome signaling pathway |
2007-08-09 | Deleted | SYNONYM | red-sensitive opsin |
2007-08-09 | Added | SYNONYM | red-sensitive opsin |
2007-08-09 | Added | SYNONYM | phytochrome signaling pathway |
2005-08-10 | Added | SYNONYM | red-sensitive opsin |
2005-05-16 | Added | SYNONYM | phytochrome signaling pathway |
Timestamp | Action | Category | Detail |
---|---|---|---|
2002-04-23 | Updated | TERM | red, far-red light phototransduction |
2002-02-06 | Updated | TERM | phytochrome mediated phototransduction |
2001-04-03 | Updated | TERM | phytochrome mediated phototransduction |
2001-03-30 | Added | TERM | phytochrome mediated phototransduction |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-05-13 | Added | DEFINITION | The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm. |
2008-05-12 | Deleted | DEFINITION | The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm. |
2007-08-09 | Deleted | SYNONYM | phytochrome signaling pathway |
2007-08-09 | Deleted | SYNONYM | red-sensitive opsin |
2007-08-09 | Added | SYNONYM | red-sensitive opsin |
2007-08-09 | Added | SYNONYM | phytochrome signaling pathway |
2005-08-10 | Added | SYNONYM | red-sensitive opsin |
2005-05-16 | Added | SYNONYM | phytochrome signaling pathway |
2005-05-14 | Added | DEFINITION | The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-10-27 | Added | RELATION | part of GO:0010017 (red or far-red light signaling pathway) |
2008-04-01 | Updated | RELATION | is a GO:0007602 (phototransduction) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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