This term is obsolete.

GO:0009585 JSON

red, far-red light phototransduction

Biological Process

Definition (GO:0009585 GONUTS page)

The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm.

2,212 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
phytochrome signaling pathway broad
red-sensitive opsin related

Ancestor Chart

Ancestor chart for GO:0009585
Chart options
Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0009585

Child Term Relationship to
GO:0009585
red or far-red light photoreceptor activity
part_of

GO Discussions

The GO editorial group is intending to improve the information provided in this area of the GO. If you would like to be involved in discussions regarding this development activity, please email the GO Consortium. Please note that it is still appropriate to use this term for curation or analysis purpose:

Ontology Development Project
signalling Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein F4JZY1 3702 CIP1_ARATH GO:0009416 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:7753789
NOT-qualified manual protein O22914 3702 CP121_ARATH GO:0009416 2 NOT-qualified manual annotations exist with evidence code ECO:0000270 from these references: PMID:15533878, PMID:18974062
NOT-qualified manual protein P08735 4577 G3PC1_MAIZE GO:0009416 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:2535522
NOT-qualified manual protein P27788 4577 FER3_MAIZE GO:0009416 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:16668188
NOT-qualified manual protein P29993 7227 ITPR_DROME GO:0007602 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:28660247
NOT-qualified manual protein Q9C9K2 3702 CP123_ARATH GO:0009416 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:18974062

Cross-references

Database ID Description
InterPro IPR012129 Phytochrome A/B/C/D/E
UniProtKB-KW KW-0607 Phytochrome signaling pathway

Replaces

This term can be used instead of these obsolete terms:

GO Identifier GO Term Name Reason
GO:0015061 obsolete red-sensitive opsin consider GO:0009585

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0009585 based on ALL annotations
The top 100 of 275 co-occurring terms
Co-occurring Term PR S% #Together #Compared
red, far-red light phototransduction
89,094.52 100.00 2,188 2,188
detection of visible light
7,880.70 8.76 1,981 22,396
photoreceptor activity
2,343.57 2.62 1,982 75,349
red or far-red light signaling pathway
3,296.24 2.12 103 2,784
photoperiodism, flowering
10,335.79 1.95 50 431
response to far red light
3,079.46 1.29 44 1,273
regulation of photomorphogenesis
2,054.59 1.09 44 1,908
protein homodimerization activity
860.76 0.97 1,979 204,841
negative regulation of leaf senescence
14,726.37 0.87 20 121
leaf development
547.39 0.47 42 6,836
Totals 12751 5336537
No co-occurrence statistics for GO:0009585 based on MANUAL annotations
The top 100 of 123 co-occurring terms
Co-occurring Term PR S% #Together #Compared
red, far-red light phototransduction
39,145.42 100.00 33 33
red or far-red light photoreceptor activity
19,572.71 8.33 3 6
blue light signaling pathway
5,105.93 5.66 3 23
red or far-red light signaling pathway
1,505.59 3.01 4 104
response to light intensity
2,007.46 2.86 2 39
trichome papilla formation
13,048.48 2.86 1 3
jasmonoyl-L-amino acid ligase activity
7,829.09 2.70 1 5
response to far red light
1,283.46 2.65 4 122
response to low fluence blue light stimulus by blue low-fluence system
4,893.18 2.50 1 8
rod bipolar cell differentiation
4,893.18 2.50 1 8
Totals 156 51663

Change Log

Timestamp Action Category Detail
2009-10-27 Added RELATION part of GO:0010017 (red or far-red light signaling pathway)
2008-05-13 Added DEFINITION The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm.
2008-05-12 Deleted DEFINITION The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm.
2008-04-01 Updated RELATION is a GO:0007602 (phototransduction)
2007-08-09 Deleted SYNONYM phytochrome signaling pathway
2007-08-09 Deleted SYNONYM red-sensitive opsin
2007-08-09 Added SYNONYM red-sensitive opsin
2007-08-09 Added SYNONYM phytochrome signaling pathway
2005-08-10 Added SYNONYM red-sensitive opsin
2005-05-16 Added SYNONYM phytochrome signaling pathway
Timestamp Action Category Detail
2002-04-23 Updated TERM red, far-red light phototransduction
2002-02-06 Updated TERM phytochrome mediated phototransduction
2001-04-03 Updated TERM phytochrome mediated phototransduction
2001-03-30 Added TERM phytochrome mediated phototransduction
Timestamp Action Category Detail
2008-05-13 Added DEFINITION The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm.
2008-05-12 Deleted DEFINITION The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm.
2007-08-09 Deleted SYNONYM phytochrome signaling pathway
2007-08-09 Deleted SYNONYM red-sensitive opsin
2007-08-09 Added SYNONYM red-sensitive opsin
2007-08-09 Added SYNONYM phytochrome signaling pathway
2005-08-10 Added SYNONYM red-sensitive opsin
2005-05-16 Added SYNONYM phytochrome signaling pathway
2005-05-14 Added DEFINITION The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm.
Timestamp Action Category Detail
2009-10-27 Added RELATION part of GO:0010017 (red or far-red light signaling pathway)
2008-04-01 Updated RELATION is a GO:0007602 (phototransduction)
Timestamp Action Category Detail
Timestamp Action Category Detail
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