This term is obsolete.

GO:0016070 JSON

RNA metabolic process

Biological Process

Definition (GO:0016070 GONUTS page)

The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.

annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
RNA metabolism exact

Ancestor Chart

Ancestor chart for GO:0016070
Chart options
Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0016070

Child Term Relationship to
GO:0016070
rRNA metabolic process
is_a
snRNA metabolic process
is_a
tRNA metabolic process
is_a
sno(s)RNA metabolic process
is_a
21U-RNA metabolic process
is_a
miRNA metabolic process
is_a
RNA replication
is_a
RNA catabolic process
is_a
negative regulation of RNA metabolic process
negatively_regulates
RNA exon ligation
is_a

Cross-references

Database ID Description
InterPro IPR000404 Flavivirus non-structural protein NS4A
InterPro IPR004476 Ribonuclease II/ribonuclease R
InterPro IPR004641 Ribonuclease HIII
InterPro IPR004649 Ribonuclease H2, subunit A
InterPro IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
InterPro IPR014944 Toxin SymE-like
InterPro IPR015172 MIF4G-like, type 1
InterPro IPR015174 MIF4G-like, type 2
InterPro IPR020883 Type I toxin-antitoxin system, SymE toxin
InterPro IPR033956 Translin

Cross-Ontology Relations

Relation Other Ontology ID Term
has_primary_input_or_output CHEBI CHEBI:33697 ribonucleic acid

Replaces

This term can be used instead of these obsolete terms:

GO Identifier GO Term Name Reason
GO:0034660 obsolete ncRNA metabolic process replaced_by GO:0016070
GO:0110008 obsolete ncRNA deadenylation replaced_by GO:0016070

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0016070 based on ALL annotations
The top 100 of 1,049 co-occurring terms
Co-occurring Term PR S% #Together #Compared
RNA metabolic process
2,090.53 100.00 94,787 94,787
exoribonuclease II activity
1,843.52 28.56 28,144 31,915
mRNA catabolic process
281.50 10.37 29,450 218,708
RNA nuclease activity
231.46 8.85 28,984 261,786
polyadenylation-dependent ncRNA catabolic process
1,751.85 7.60 7,314 8,728
RNA 3'-end processing
500.26 7.56 9,430 39,407
TRAMP complex
1,202.89 7.35 7,368 12,805
poly(A) RNA polymerase activity
435.51 7.24 9,476 45,487
ribonuclease H2 complex
277.98 5.53 8,189 61,584
regulatory ncRNA-mediated gene silencing
207.63 4.95 8,515 85,735
Totals 642837 90212941
No co-occurrence statistics for GO:0016070 based on MANUAL annotations
The top 100 of 195 co-occurring terms
Co-occurring Term PR S% #Together #Compared
20,757.84 100.00 68 68
1,497.99 4.43 7 97
1,307.58 4.28 8 127
675.05 2.61 8 246
415.16 1.70 7 350
691.93 1.59 2 60
356.36 1.52 8 466
20,757.84 1.47 1 1
10,378.92 1.45 1 2
6,919.28 1.43 1 3
Totals 335 48999

GO Slims

This term is present in the following GO Consortium-maintained GO slims:

GO slim name Total Number of Terms in Slim
goslim_agr 53
goslim_metagenomics 111
goslim_candida 86
goslim_pir 438
goslim_prokaryote
goslim_euk_cellular_processes_ribbon 61

Change Log

Timestamp Action Category Detail
2024-12-05 Added XREF Reactome:R-HSA-8953854
2024-03-22 Added SUBSET goslim_euk_cellular_processes_ribbon
2023-12-15 Added SUBSET goslim_prokaryote
2022-04-08 Deleted SUBSET goslim_aspergillus
2018-01-18 Deleted RELATION is a GO:0044260 (obsolete cellular macromolecule metabolic process)
2017-08-02 Added SUBSET goslim_agr
2013-04-18 Updated SUBSET goslim_aspergillus
2013-04-18 Updated SUBSET goslim_pir
2013-04-18 Updated SUBSET goslim_candida
2013-04-18 Updated SUBSET goslim_metagenomics
Timestamp Action Category Detail
2010-02-27 Updated TERM RNA metabolic process
2010-02-10 Updated TERM cellular RNA metabolic process
2007-01-15 Updated TERM RNA metabolic process
2002-02-06 Updated TERM RNA metabolism
2001-04-03 Updated TERM RNA metabolism
2001-03-30 Added TERM RNA metabolism
Timestamp Action Category Detail
2010-02-10 Deleted DEFINITION The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
2010-02-10 Added DEFINITION The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
2008-05-13 Added DEFINITION The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
2008-05-12 Deleted DEFINITION The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
2007-08-09 Deleted SYNONYM RNA metabolism
2007-08-09 Added SYNONYM RNA metabolism
2007-01-29 Added SYNONYM RNA metabolism
2006-05-04 Updated DEFINITION The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
2005-01-21 Updated DEFINITION The chemical reactions involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
2003-04-24 Updated DEFINITION The chemical reactions and physical changes involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
2002-11-27 Added DEFINITION The chemical reactions and physical changes involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phsophodiester linkage.
Timestamp Action Category Detail
2018-01-18 Deleted RELATION is a GO:0044260 (obsolete cellular macromolecule metabolic process)
2010-04-09 Deleted RELATION is a GO:0006139 (nucleobase-containing compound metabolic process)
2010-04-09 Added RELATION is a GO:0090304 (nucleic acid metabolic process)
2009-12-19 Added RELATION is a GO:0044260 (obsolete cellular macromolecule metabolic process)
2009-12-19 Deleted RELATION is a GO:0034960 (cellular biopolymer metabolic process)
2008-10-02 Deleted RELATION is a GO:0043283 (biopolymer metabolic process)
2008-10-02 Added RELATION is a GO:0034960 (cellular biopolymer metabolic process)
2008-04-01 Updated RELATION is a GO:0043283 (biopolymer metabolic process)
2008-04-01 Updated RELATION is a GO:0006139 (nucleobase-containing compound metabolic process)
Timestamp Action Category Detail
2024-12-05 Added XREF Reactome:R-HSA-8953854
Timestamp Action Category Detail
2024-03-22 Added SUBSET goslim_euk_cellular_processes_ribbon
2023-12-15 Added SUBSET goslim_prokaryote
2022-04-08 Deleted SUBSET goslim_aspergillus
2017-08-02 Added SUBSET goslim_agr
2013-04-18 Updated SUBSET goslim_aspergillus
2013-04-18 Updated SUBSET goslim_pir
2013-04-18 Updated SUBSET goslim_candida
2013-04-18 Updated SUBSET goslim_metagenomics
2012-02-17 Added SUBSET goslim_metagenomics
2011-11-05 Added SUBSET goslim_aspergillus
2011-08-14 Deleted SUBSET goslim_yeast
2010-09-12 Deleted SUBSET goslim_pombe
2009-06-20 Added SUBSET goslim_pombe
2008-06-09 Added SUBSET goslim_candida
2008-06-09 Added SUBSET goslim_yeast
2008-06-09 Added SUBSET goslim_pir
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