GO:0016070
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RNA metabolic process
Biological Process
Definition (GO:0016070 GONUTS page)
The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
RNA metabolism | exact |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0016070
Child Term | Relationship to GO:0016070 |
---|---|
rRNA metabolic process
|
is_a |
snRNA metabolic process
|
is_a |
tRNA metabolic process
|
is_a |
sno(s)RNA metabolic process
|
is_a |
21U-RNA metabolic process
|
is_a |
miRNA metabolic process
|
is_a |
RNA replication
|
is_a |
RNA catabolic process
|
is_a |
negative regulation of RNA metabolic process
|
negatively_regulates |
RNA exon ligation
|
is_a |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR000404 | Flavivirus non-structural protein NS4A |
InterPro | IPR004476 | Ribonuclease II/ribonuclease R |
InterPro | IPR004641 | Ribonuclease HIII |
InterPro | IPR004649 | Ribonuclease H2, subunit A |
InterPro | IPR011825 | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
InterPro | IPR014944 | Toxin SymE-like |
InterPro | IPR015172 | MIF4G-like, type 1 |
InterPro | IPR015174 | MIF4G-like, type 2 |
InterPro | IPR020883 | Type I toxin-antitoxin system, SymE toxin |
InterPro | IPR033956 | Translin |
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
has_primary_input_or_output | CHEBI | CHEBI:33697 | ribonucleic acid |
Replaces
This term can be used instead of these obsolete terms:
GO Identifier | GO Term Name | Reason |
---|---|---|
GO:0034660 | obsolete ncRNA metabolic process | replaced_by GO:0016070 |
GO:0110008 | obsolete ncRNA deadenylation | replaced_by GO:0016070 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0016070 based on ALL annotations
The top 100 of 1,049 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
RNA metabolic process
|
2,090.53 | 100.00 | 94,787 | 94,787 |
exoribonuclease II activity
|
1,843.52 | 28.56 | 28,144 | 31,915 |
mRNA catabolic process
|
281.50 | 10.37 | 29,450 | 218,708 |
RNA nuclease activity
|
231.46 | 8.85 | 28,984 | 261,786 |
polyadenylation-dependent ncRNA catabolic process
|
1,751.85 | 7.60 | 7,314 | 8,728 |
RNA 3'-end processing
|
500.26 | 7.56 | 9,430 | 39,407 |
TRAMP complex
|
1,202.89 | 7.35 | 7,368 | 12,805 |
poly(A) RNA polymerase activity
|
435.51 | 7.24 | 9,476 | 45,487 |
ribonuclease H2 complex
|
277.98 | 5.53 | 8,189 | 61,584 |
regulatory ncRNA-mediated gene silencing
|
207.63 | 4.95 | 8,515 | 85,735 |
Totals | 642837 | 90212941 |
No co-occurrence statistics for GO:0016070 based on MANUAL annotations
The top 100 of 195 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
|
20,757.84 | 100.00 | 68 | 68 |
|
1,497.99 | 4.43 | 7 | 97 |
|
1,307.58 | 4.28 | 8 | 127 |
|
675.05 | 2.61 | 8 | 246 |
|
415.16 | 1.70 | 7 | 350 |
|
691.93 | 1.59 | 2 | 60 |
|
356.36 | 1.52 | 8 | 466 |
|
20,757.84 | 1.47 | 1 | 1 |
|
10,378.92 | 1.45 | 1 | 2 |
|
6,919.28 | 1.43 | 1 | 3 |
Totals | 335 | 48999 |
GO Slims
This term is present in the following GO Consortium-maintained GO slims:
GO slim name | Total Number of Terms in Slim |
---|---|
goslim_agr | 53 |
goslim_metagenomics | 111 |
goslim_candida | 86 |
goslim_pir | 438 |
goslim_prokaryote | |
goslim_euk_cellular_processes_ribbon | 61 |
Change Log
- All changes
- All changes
- Term
- Term
- Definition / Synonyms
- Definition / Synonyms
- Relationships
- Relationships
- Cross-references
- Cross-references
- Other
- Other
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-12-05 | Added | XREF | Reactome:R-HSA-8953854 |
2024-03-22 | Added | SUBSET | goslim_euk_cellular_processes_ribbon |
2023-12-15 | Added | SUBSET | goslim_prokaryote |
2022-04-08 | Deleted | SUBSET | goslim_aspergillus |
2018-01-18 | Deleted | RELATION | is a GO:0044260 (obsolete cellular macromolecule metabolic process) |
2017-08-02 | Added | SUBSET | goslim_agr |
2013-04-18 | Updated | SUBSET | goslim_aspergillus |
2013-04-18 | Updated | SUBSET | goslim_pir |
2013-04-18 | Updated | SUBSET | goslim_candida |
2013-04-18 | Updated | SUBSET | goslim_metagenomics |
Timestamp | Action | Category | Detail |
---|---|---|---|
2010-02-27 | Updated | TERM | RNA metabolic process |
2010-02-10 | Updated | TERM | cellular RNA metabolic process |
2007-01-15 | Updated | TERM | RNA metabolic process |
2002-02-06 | Updated | TERM | RNA metabolism |
2001-04-03 | Updated | TERM | RNA metabolism |
2001-03-30 | Added | TERM | RNA metabolism |
Timestamp | Action | Category | Detail |
---|---|---|---|
2010-02-10 | Deleted | DEFINITION | The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. |
2010-02-10 | Added | DEFINITION | The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. |
2008-05-13 | Added | DEFINITION | The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. |
2008-05-12 | Deleted | DEFINITION | The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. |
2007-08-09 | Deleted | SYNONYM | RNA metabolism |
2007-08-09 | Added | SYNONYM | RNA metabolism |
2007-01-29 | Added | SYNONYM | RNA metabolism |
2006-05-04 | Updated | DEFINITION | The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. |
2005-01-21 | Updated | DEFINITION | The chemical reactions involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. |
2003-04-24 | Updated | DEFINITION | The chemical reactions and physical changes involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. |
2002-11-27 | Added | DEFINITION | The chemical reactions and physical changes involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phsophodiester linkage. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2018-01-18 | Deleted | RELATION | is a GO:0044260 (obsolete cellular macromolecule metabolic process) |
2010-04-09 | Deleted | RELATION | is a GO:0006139 (nucleobase-containing compound metabolic process) |
2010-04-09 | Added | RELATION | is a GO:0090304 (nucleic acid metabolic process) |
2009-12-19 | Added | RELATION | is a GO:0044260 (obsolete cellular macromolecule metabolic process) |
2009-12-19 | Deleted | RELATION | is a GO:0034960 (cellular biopolymer metabolic process) |
2008-10-02 | Deleted | RELATION | is a GO:0043283 (biopolymer metabolic process) |
2008-10-02 | Added | RELATION | is a GO:0034960 (cellular biopolymer metabolic process) |
2008-04-01 | Updated | RELATION | is a GO:0043283 (biopolymer metabolic process) |
2008-04-01 | Updated | RELATION | is a GO:0006139 (nucleobase-containing compound metabolic process) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-12-05 | Added | XREF | Reactome:R-HSA-8953854 |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-22 | Added | SUBSET | goslim_euk_cellular_processes_ribbon |
2023-12-15 | Added | SUBSET | goslim_prokaryote |
2022-04-08 | Deleted | SUBSET | goslim_aspergillus |
2017-08-02 | Added | SUBSET | goslim_agr |
2013-04-18 | Updated | SUBSET | goslim_aspergillus |
2013-04-18 | Updated | SUBSET | goslim_pir |
2013-04-18 | Updated | SUBSET | goslim_candida |
2013-04-18 | Updated | SUBSET | goslim_metagenomics |
2012-02-17 | Added | SUBSET | goslim_metagenomics |
2011-11-05 | Added | SUBSET | goslim_aspergillus |
2011-08-14 | Deleted | SUBSET | goslim_yeast |
2010-09-12 | Deleted | SUBSET | goslim_pombe |
2009-06-20 | Added | SUBSET | goslim_pombe |
2008-06-09 | Added | SUBSET | goslim_candida |
2008-06-09 | Added | SUBSET | goslim_yeast |
2008-06-09 | Added | SUBSET | goslim_pir |
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