GO:0016268
JSON
core 2 O-glycan biosynthetic process
Biological Process
Definition (GO:0016268 GONUTS page)
The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc or Core 1) to form the core 2 O-glycan structure, GlcNAc-beta-(1->6)[Gal-beta-(1->3)]-GalNAc. PMID:10580130 PMID:33775405
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
core 2 O-glycan biosynthesis | exact |
O-glycan processing, core 2 | exact |
Ancestor Chart
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A6KJI3 | 10116 | A6KJI3_RAT | GO:0006486 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | D6WQD5 | 7070 | D6WQD5_TRICA | GO:0070085 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | O00469 | 9606 | PLOD2_HUMAN | GO:0006493 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:10934207 | |
NOT-qualified manual | protein | Q02809 | 9606 | PLOD1_HUMAN | GO:0006493 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:10934207 | |
NOT-qualified manual | protein | Q63321 | 10116 | PLOD1_RAT | GO:0006493 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | Q6AYL7 | 10116 | Q6AYL7_RAT | GO:0006486 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | Q7JRM5 | 7227 | Q7JRM5_DROME | GO:0070085 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | Q7Q9P6 | 7165 | Q7Q9P6_ANOGA | GO:0070085 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | Q7Z4T8 | 9606 | GLTL5_HUMAN | GO:0006486 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:24398516 | |
NOT-qualified manual | protein | Q811A3 | 10116 | PLOD2_RAT | GO:0006493 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Cross-references
Database | ID | Description |
---|---|---|
MetaCyc | PWY-7433 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0016268 based on ALL annotations
The top 20 of 20 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
core 2 O-glycan biosynthetic process
|
38,987,756.00 | 100.00 | 5 | 5 |
cell adhesion molecule production
|
974,693.94 | 2.50 | 5 | 200 |
tissue morphogenesis
|
277,987.56 | 0.71 | 4 | 561 |
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity
|
247,698.60 | 0.64 | 5 | 787 |
positive regulation of leukocyte tethering or rolling
|
246,368.14 | 0.63 | 4 | 633 |
kidney morphogenesis
|
114,669.88 | 0.29 | 4 | 1,360 |
leukocyte tethering or rolling
|
61,320.79 | 0.16 | 5 | 3,179 |
glycoprotein biosynthetic process
|
31,884.00 | 0.08 | 5 | 6,114 |
Golgi cisterna
|
25,169.63 | 0.06 | 5 | 7,745 |
response to insulin
|
23,900.54 | 0.06 | 4 | 6,525 |
Totals | 78 | 59734464 |
No co-occurrence statistics for GO:0016268 based on MANUAL annotations
The top 16 of 16 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
core 2 O-glycan biosynthetic process
|
258,359.80 | 100.00 | 5 | 5 |
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity
|
75,988.18 | 29.41 | 5 | 17 |
cell adhesion molecule production
|
44,544.79 | 17.24 | 5 | 29 |
tissue morphogenesis
|
25,002.56 | 9.09 | 3 | 31 |
glycoprotein biosynthetic process
|
17,695.88 | 6.85 | 5 | 73 |
positive regulation of leukocyte tethering or rolling
|
16,147.49 | 6.00 | 3 | 48 |
kidney morphogenesis
|
15,197.64 | 5.66 | 3 | 51 |
leukocyte tethering or rolling
|
9,861.06 | 3.82 | 5 | 131 |
Golgi cisterna
|
4,532.63 | 1.75 | 5 | 285 |
O-glycan processing
|
1,537.86 | 0.58 | 1 | 168 |
Totals | 50 | 147747 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-20 | Deleted | DEFINITION | The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 2 O-glycan structure, GlcNAc-beta-(1->6)[Gal-beta-(1->3)]-GalNAc. |
2024-09-20 | Added | SYNONYM | O-glycan processing, core 2 |
2024-09-20 | Added | XREF | MetaCyc:PWY-7433 |
2024-09-20 | Deleted | SUBSET | gocheck_obsoletion_candidate |
2024-09-20 | Updated | TERM | core 2 O-glycan biosynthetic process |
2024-09-20 | Added | SYNONYM | core 2 O-glycan biosynthesis |
2024-09-20 | Added | DEFINITION | The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc or Core 1) to form the core 2 O-glycan structure, GlcNAc-beta-(1->6)[Gal-beta-(1->3)]-GalNAc. |
2024-07-26 | Deleted | SUBSET | gocheck_do_not_annotate |
2024-07-26 | Added | SUBSET | gocheck_obsoletion_candidate |
2023-06-13 | Added | SUBSET | gocheck_do_not_annotate |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-20 | Updated | TERM | core 2 O-glycan biosynthetic process |
2002-02-06 | Updated | TERM | O-glycan processing, core 2 |
2001-04-03 | Updated | TERM | O-glycan processing, core 2 |
2001-03-30 | Added | TERM | O-glycan processing, core 2 |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-20 | Deleted | DEFINITION | The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 2 O-glycan structure, GlcNAc-beta-(1->6)[Gal-beta-(1->3)]-GalNAc. |
2024-09-20 | Added | SYNONYM | O-glycan processing, core 2 |
2024-09-20 | Added | SYNONYM | core 2 O-glycan biosynthesis |
2024-09-20 | Added | DEFINITION | The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc or Core 1) to form the core 2 O-glycan structure, GlcNAc-beta-(1->6)[Gal-beta-(1->3)]-GalNAc. |
2012-08-11 | Added | DEFINITION | The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 2 O-glycan structure, GlcNAc-beta-(1->6)[Gal-beta-(1->3)]-GalNAc. |
2012-08-11 | Deleted | DEFINITION | The stepwise addition of sugar residues to the initially added O-linked sugar (usually GalNAc) to form the core 2 O-glycan structure, GlcNAc-beta-(1->6)[Gal-beta-(1->3)]-GalNAc. |
2011-10-28 | Added | DEFINITION | The stepwise addition of sugar residues to the initially added O-linked sugar (usually GalNAc) to form the core 2 O-glycan structure, GlcNAc-beta-(1->6)[Gal-beta-(1->3)]-GalNAc. |
2011-10-28 | Deleted | DEFINITION | The stepwise addition of sugar residues to the initially added O-linked sugar (usually GalNAc) to form the core 2 O-glycan structure, GlcNAc-beta-1->6(Gal-beta-1->3)-GalNAc. |
2008-05-13 | Added | DEFINITION | The stepwise addition of sugar residues to the initially added O-linked sugar (usually GalNAc) to form the core 2 O-glycan structure, GlcNAc-beta-1->6(Gal-beta-1->3)-GalNAc. |
2008-05-12 | Deleted | DEFINITION | The stepwise addition of sugar residues to the initially added O-linked sugar (usually GalNAc) to form the core 2 O-glycan structure, GlcNAc-beta-1->6(Gal-beta-1->3)-GalNAc. |
2004-10-14 | Added | DEFINITION | The stepwise addition of sugar residues to the initially added O-linked sugar (usually GalNAc) to form the core 2 O-glycan structure, GlcNAc-beta-1->6(Gal-beta-1->3)-GalNAc. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0016266 (O-glycan processing) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-20 | Added | XREF | MetaCyc:PWY-7433 |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-20 | Deleted | SUBSET | gocheck_obsoletion_candidate |
2024-07-26 | Deleted | SUBSET | gocheck_do_not_annotate |
2024-07-26 | Added | SUBSET | gocheck_obsoletion_candidate |
2023-06-13 | Added | SUBSET | gocheck_do_not_annotate |
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