GO:0019353
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protoporphyrinogen IX biosynthetic process from glutamate
Biological Process
Definition (GO:0019353 GONUTS page)
The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate. PMID:32976912
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
protoporphyrinogen IX synthesis from glutamate | exact |
protoporphyrinogen IX formation from glutamate | exact |
protoporphyrinogen IX anabolism from glutamate | exact |
Ancestor Chart
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0019353 | protoporphyrinogen IX biosynthetic process from glutamate | Never in Taxon | 33208 | Metazoa | |
GO:0019353 | protoporphyrinogen IX biosynthetic process from glutamate | Never in Taxon | 4751 | Fungi |
More information on taxon constraints in GO is available here
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
has_primary_input | CHEBI | CHEBI:14321 | glutamate(1-) |
has_primary_output | CHEBI | CHEBI:57307 | protoporphyrinogen(2-) |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0019353 based on ALL annotations
The top 79 of 79 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
protoporphyrinogen IX biosynthetic process from glutamate
|
4,623.68 | 100.00 | 42,161 | 42,161 |
glutamyl-tRNA reductase activity
|
4,031.64 | 60.29 | 27,886 | 31,981 |
porphyrin-containing compound metabolic process
|
1,886.20 | 21.99 | 13,620 | 33,387 |
protoporphyrinogen IX biosynthetic process
|
743.67 | 15.90 | 39,285 | 244,251 |
tetrapyrrole biosynthetic process
|
788.26 | 15.65 | 27,688 | 162,409 |
uroporphyrinogen decarboxylase activity
|
988.88 | 15.08 | 14,273 | 66,736 |
porphyrin-containing compound biosynthetic process
|
504.40 | 10.86 | 40,477 | 371,042 |
heme biosynthetic process
|
226.71 | 4.47 | 14,276 | 291,153 |
NADP binding
|
147.94 | 3.15 | 27,754 | 867,427 |
carboxy-lyase activity
|
94.60 | 1.96 | 13,620 | 665,708 |
Totals | 315801 | 263855275 |
No co-occurrence statistics for GO:0019353 based on MANUAL annotations
The top 21 of 21 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
protoporphyrinogen IX biosynthetic process from glutamate
|
35,883.31 | 100.00 | 36 | 36 |
glutamyl-tRNA reductase activity
|
32,763.02 | 55.26 | 21 | 23 |
uroporphyrinogen decarboxylase activity
|
5,592.20 | 11.88 | 12 | 77 |
coproporphyrinogen dehydrogenase activity
|
1,495.14 | 1.69 | 1 | 24 |
heme B biosynthetic process
|
1,435.33 | 1.67 | 1 | 25 |
heme biosynthetic process
|
585.51 | 1.59 | 14 | 858 |
response to hydroperoxide
|
703.59 | 1.16 | 1 | 51 |
protoporphyrinogen IX biosynthetic process
|
460.04 | 1.05 | 2 | 156 |
tetrapyrrole binding
|
552.05 | 1.00 | 1 | 65 |
uroporphyrinogen III biosynthetic process
|
381.74 | 0.78 | 1 | 94 |
Totals | 113 | 378832 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2019-05-09 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
2019-05-09 | Added | CONSTRAINT | never_in_taxon NCBITaxon:33208 (Metazoa) |
2012-10-29 | Deleted | RELATION | is a GO:0006536 (glutamate metabolic process) |
2009-07-03 | Added | RELATION | is a GO:0033526 (tetrapyrrole biosynthetic process from glutamate) |
2009-05-21 | Deleted | XREF | MetaCyc:HEME+BIOSYNTHESIS+II |
2008-05-13 | Added | DEFINITION | The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate. |
2008-05-12 | Deleted | DEFINITION | The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate. |
2008-04-01 | Updated | RELATION | is a GO:0006536 (glutamate metabolic process) |
2008-04-01 | Updated | RELATION | is a GO:0006782 (protoporphyrinogen IX biosynthetic process) |
2007-08-09 | Added | SYNONYM | protoporphyrinogen IX synthesis from glutamate |
Timestamp | Action | Category | Detail |
---|---|---|---|
2007-01-15 | Updated | TERM | protoporphyrinogen IX biosynthetic process from glutamate |
2002-10-12 | Updated | TERM | protoporphyrinogen IX biosynthesis from glutamate |
2001-10-04 | Added | TERM | protoporphyrinogen IX biosynthesis, from glutamate |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-05-13 | Added | DEFINITION | The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate. |
2008-05-12 | Deleted | DEFINITION | The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate. |
2007-08-09 | Added | SYNONYM | protoporphyrinogen IX synthesis from glutamate |
2007-08-09 | Deleted | SYNONYM | protoporphyrinogen IX synthesis from glutamate |
2007-08-09 | Deleted | SYNONYM | protoporphyrinogen IX formation from glutamate |
2007-08-09 | Deleted | SYNONYM | protoporphyrinogen IX anabolism from glutamate |
2007-08-09 | Added | SYNONYM | protoporphyrinogen IX formation from glutamate |
2007-08-09 | Added | SYNONYM | protoporphyrinogen IX anabolism from glutamate |
2006-05-04 | Updated | DEFINITION | The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate. |
2005-08-10 | Added | SYNONYM | protoporphyrinogen IX anabolism from glutamate |
2005-08-10 | Added | SYNONYM | protoporphyrinogen IX synthesis from glutamate |
2005-08-10 | Added | SYNONYM | protoporphyrinogen IX formation from glutamate |
2002-11-27 | Added | DEFINITION | The formation of protoporphyrinogen IX from simpler components, including glutamate. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2012-10-29 | Deleted | RELATION | is a GO:0006536 (glutamate metabolic process) |
2009-07-03 | Added | RELATION | is a GO:0033526 (tetrapyrrole biosynthetic process from glutamate) |
2008-04-01 | Updated | RELATION | is a GO:0006536 (glutamate metabolic process) |
2008-04-01 | Updated | RELATION | is a GO:0006782 (protoporphyrinogen IX biosynthetic process) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-05-21 | Deleted | XREF | MetaCyc:HEME+BIOSYNTHESIS+II |
2007-07-11 | Deleted | XREF | MetaCyc:HEME BIOSYNTHESIS II |
2007-07-11 | Added | XREF | MetaCyc:HEME+BIOSYNTHESIS+II |
2003-10-27 | Added | XREF | MetaCyc:HEME BIOSYNTHESIS II |
Timestamp | Action | Category | Detail |
---|---|---|---|
2019-05-09 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
2019-05-09 | Added | CONSTRAINT | never_in_taxon NCBITaxon:33208 (Metazoa) |
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