This term is obsolete.

GO:0019353 JSON

protoporphyrinogen IX biosynthetic process from glutamate

Biological Process

Definition (GO:0019353 GONUTS page)

The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate. PMID:32976912

42,747 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
protoporphyrinogen IX anabolism from glutamate exact
protoporphyrinogen IX formation from glutamate exact
protoporphyrinogen IX synthesis from glutamate exact

Ancestor Chart

Ancestor chart for GO:0019353
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Ancestor chart

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0019353 protoporphyrinogen IX biosynthetic process from glutamate Never in Taxon 33208 Metazoa
GO:0019353 protoporphyrinogen IX biosynthetic process from glutamate Never in Taxon 4751 Fungi

More information on taxon constraints in GO is available here

Cross-Ontology Relations

Relation Other Ontology ID Term
has_primary_input CHEBI CHEBI:14321 glutamate(1-)
has_primary_output CHEBI CHEBI:57307 protoporphyrinogen(2-)

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0019353 based on ALL annotations
The top 80 of 80 co-occurring terms
Co-occurring Term PR S% #Together #Compared
protoporphyrinogen IX biosynthetic process from glutamate
4,635.74 100.00 42,745 42,745
glutamyl-tRNA reductase activity
4,041.37 60.48 28,374 32,547
porphyrin-containing compound metabolic process
1,871.38 21.77 13,718 33,982
protoporphyrinogen IX biosynthetic process
754.06 16.07 39,746 244,346
tetrapyrrole biosynthetic process
789.72 15.66 28,171 165,367
uroporphyrinogen decarboxylase activity
987.24 14.99 14,369 67,472
porphyrin-containing compound biosynthetic process
496.03 10.65 41,032 383,474
heme biosynthetic process
224.77 4.42 14,372 296,419
NADP binding
148.06 3.14 28,240 884,170
carboxy-lyase activity
93.45 1.93 13,718 680,500
Totals 320015 266670717
No co-occurrence statistics for GO:0019353 based on MANUAL annotations
The top 21 of 21 co-occurring terms
Co-occurring Term PR S% #Together #Compared
protoporphyrinogen IX biosynthetic process from glutamate
39,209.25 100.00 36 36
glutamyl-tRNA reductase activity
35,799.75 55.26 21 23
uroporphyrinogen decarboxylase activity
5,881.39 11.54 12 80
coproporphyrinogen dehydrogenase activity
1,633.72 1.69 1 24
heme B biosynthetic process
1,568.37 1.67 1 25
heme biosynthetic process
645.80 1.61 14 850
response to hydroperoxide
768.81 1.16 1 51
protoporphyrinogen IX biosynthetic process
472.40 1.00 2 166
tetrapyrrole binding
560.13 0.95 1 70
uroporphyrinogen III biosynthetic process
363.05 0.70 1 108
Totals 113 406498

Change Log

Timestamp Action Category Detail
2019-05-09 Added CONSTRAINT never_in_taxon NCBITaxon:4751 (Fungi)
2019-05-09 Added CONSTRAINT never_in_taxon NCBITaxon:33208 (Metazoa)
2012-10-29 Deleted RELATION is a GO:0006536 (glutamate metabolic process)
2009-07-03 Added RELATION is a GO:0033526 (tetrapyrrole biosynthetic process from glutamate)
2009-05-21 Deleted XREF MetaCyc:HEME+BIOSYNTHESIS+II
2008-05-13 Added DEFINITION The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate.
2008-05-12 Deleted DEFINITION The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate.
2008-04-01 Updated RELATION is a GO:0006536 (glutamate metabolic process)
2008-04-01 Updated RELATION is a GO:0006782 (protoporphyrinogen IX biosynthetic process)
2007-08-09 Added SYNONYM protoporphyrinogen IX synthesis from glutamate
Timestamp Action Category Detail
2007-01-15 Updated TERM protoporphyrinogen IX biosynthetic process from glutamate
2002-10-12 Updated TERM protoporphyrinogen IX biosynthesis from glutamate
2001-10-04 Added TERM protoporphyrinogen IX biosynthesis, from glutamate
Timestamp Action Category Detail
2008-05-13 Added DEFINITION The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate.
2008-05-12 Deleted DEFINITION The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate.
2007-08-09 Added SYNONYM protoporphyrinogen IX synthesis from glutamate
2007-08-09 Deleted SYNONYM protoporphyrinogen IX synthesis from glutamate
2007-08-09 Deleted SYNONYM protoporphyrinogen IX formation from glutamate
2007-08-09 Deleted SYNONYM protoporphyrinogen IX anabolism from glutamate
2007-08-09 Added SYNONYM protoporphyrinogen IX formation from glutamate
2007-08-09 Added SYNONYM protoporphyrinogen IX anabolism from glutamate
2006-05-04 Updated DEFINITION The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glutamate.
2005-08-10 Added SYNONYM protoporphyrinogen IX anabolism from glutamate
2005-08-10 Added SYNONYM protoporphyrinogen IX synthesis from glutamate
2005-08-10 Added SYNONYM protoporphyrinogen IX formation from glutamate
2002-11-27 Added DEFINITION The formation of protoporphyrinogen IX from simpler components, including glutamate.
Timestamp Action Category Detail
2012-10-29 Deleted RELATION is a GO:0006536 (glutamate metabolic process)
2009-07-03 Added RELATION is a GO:0033526 (tetrapyrrole biosynthetic process from glutamate)
2008-04-01 Updated RELATION is a GO:0006536 (glutamate metabolic process)
2008-04-01 Updated RELATION is a GO:0006782 (protoporphyrinogen IX biosynthetic process)
Timestamp Action Category Detail
2009-05-21 Deleted XREF MetaCyc:HEME+BIOSYNTHESIS+II
2007-07-11 Deleted XREF MetaCyc:HEME BIOSYNTHESIS II
2007-07-11 Added XREF MetaCyc:HEME+BIOSYNTHESIS+II
2003-10-27 Added XREF MetaCyc:HEME BIOSYNTHESIS II
Timestamp Action Category Detail
2019-05-09 Added CONSTRAINT never_in_taxon NCBITaxon:4751 (Fungi)
2019-05-09 Added CONSTRAINT never_in_taxon NCBITaxon:33208 (Metazoa)
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