GO:0019843
JSON
rRNA binding
Molecular Function
Definition (GO:0019843 GONUTS page)
Binding to a ribosomal RNA.
Secondary IDs
GO:0000944
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
base pairing with rRNA | narrow |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0019843
Child Term | Relationship to GO:0019843 |
---|---|
rRNA modification guide activity
|
is_a |
B-WICH complex
|
capable_of |
rRNA primary transcript binding
|
is_a |
large ribosomal subunit rRNA binding
|
is_a |
5S rRNA binding
|
is_a |
5.8S rRNA binding
|
is_a |
small ribosomal subunit rRNA binding
|
is_a |
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Binding term considerations | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | B1WC40 | 10116 | NCBP2_RAT | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | P52298 | 9606 | NCBP2_HUMAN | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:7478990 | |
NOT-qualified manual | protein | P52299 | 8355 | NCBP2_XENLA | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024 | |
NOT-qualified manual | protein | Q15287 | 9606 | RNPS1_HUMAN | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:22388736 | |
NOT-qualified manual | protein | Q23500 | 6239 | ACOHC_CAEEL | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:12438312 | |
NOT-qualified manual | protein | Q52KI8 | 10090 | SRRM1_MOUSE | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: PMID:9531537 | |
NOT-qualified manual | protein | Q6AYK1 | 10116 | RNPS1_RAT | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | Q6QN14 | 9606 | U17L6_HUMAN | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:17109758 | |
NOT-qualified manual | protein | Q9CQ49 | 10090 | NCBP2_MOUSE | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024 | |
NOT-qualified manual | protein | Q9YH12 | 8319 | LSM14_PLEWA | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:9851867 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR000114 | Large ribosomal subunit protein uL16, bacterial-type |
InterPro | IPR000529 | Small ribosomal subunit protein bS6 |
InterPro | IPR000702 | Large ribosomal subunit protein uL6-like |
InterPro | IPR001014 | Large ribosomal subunit protein uL23, conserved site |
InterPro | IPR001912 | Small ribosomal subunit protein uS4, N-terminal |
InterPro | IPR005813 | Large ribosomal subunit protein bL20 |
InterPro | IPR007109 | Brix domain |
InterPro | IPR018079 | Small ribosomal subunit protein uS4, conserved site |
InterPro | IPR019906 | Large ribosomal subunit protein uL6, bacterial-type |
InterPro | IPR019907 | Large ribosomal subunit protein uL6, archaea |
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
has_primary_input | CHEBI | CHEBI:18111 | ribosomal RNA |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0019843 based on ALL annotations
The top 100 of 2,233 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
rRNA binding
|
95.72 | 100.00 | 2,036,482 | 2,036,482 |
ribonucleoprotein complex
|
44.20 | 42.63 | 1,726,107 | 3,738,529 |
small ribosomal subunit
|
64.44 | 18.52 | 414,331 | 615,502 |
cytosolic large ribosomal subunit
|
43.39 | 16.06 | 405,688 | 894,979 |
structural constituent of ribosome
|
14.97 | 15.14 | 1,682,562 | 10,760,611 |
translation
|
14.77 | 15.07 | 1,763,832 | 11,430,029 |
ribosome
|
14.67 | 14.87 | 1,698,606 | 11,084,221 |
large ribosomal subunit
|
60.54 | 12.20 | 267,397 | 422,765 |
tRNA binding
|
25.48 | 11.52 | 343,890 | 1,291,960 |
RNA binding
|
11.20 | 9.48 | 678,284 | 5,796,616 |
Totals | 15591725 | 242061752 |
No co-occurrence statistics for GO:0019843 based on MANUAL annotations
The top 100 of 459 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
rRNA binding
|
709.39 | 100.00 | 1,821 | 1,821 |
ribosomal small subunit assembly
|
188.36 | 16.62 | 560 | 2,109 |
ribosome
|
173.38 | 12.94 | 393 | 1,608 |
ribosomal small subunit biogenesis
|
152.37 | 11.48 | 360 | 1,676 |
ribosomal small subunit binding
|
210.81 | 8.72 | 200 | 673 |
rRNA (pseudouridine) methyltransferase activity
|
694.19 | 7.51 | 137 | 140 |
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
|
77.11 | 6.28 | 236 | 2,171 |
cytosolic small ribosomal subunit
|
51.18 | 5.77 | 408 | 5,655 |
mitochondrial translation
|
72.49 | 5.47 | 192 | 1,879 |
translation
|
43.54 | 5.04 | 400 | 6,517 |
Totals | 8234 | 221306 |
GO Slims
This term is present in the following GO Consortium-maintained GO slims:
GO slim name | Total Number of Terms in Slim |
---|---|
goslim_yeast | 163 |
goslim_chembl | 296 |
Change Log
- All changes
- All changes
- Term
- Term
- Definition / Synonyms
- Definition / Synonyms
- Relationships
- Relationships
- Cross-references
- Cross-references
- Other
- Other
Timestamp | Action | Category | Detail |
---|---|---|---|
2022-01-12 | Deleted | SUBSET | goslim_generic |
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with ribosomal RNA. |
2021-05-24 | Added | DEFINITION | Binding to a ribosomal RNA. |
2018-12-11 | Added | SECONDARY | GO:0000944 (base pairing with rRNA) |
2018-12-11 | Added | SYNONYM | base pairing with rRNA |
2015-05-19 | Deleted | SUBSET | goslim_ChEMBL |
2015-05-19 | Added | SUBSET | goslim_chembl |
2015-05-11 | Added | SUBSET | goslim_ChEMBL |
2013-04-18 | Updated | SUBSET | goslim_yeast |
2013-04-18 | Updated | SUBSET | goslim_generic |
Timestamp | Action | Category | Detail |
---|---|---|---|
2003-06-10 | Updated | TERM | rRNA binding |
2003-03-19 | Updated | TERM | rRNA binding activity |
2001-12-10 | Added | TERM | rRNA binding |
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with ribosomal RNA. |
2021-05-24 | Added | DEFINITION | Binding to a ribosomal RNA. |
2018-12-11 | Added | SYNONYM | base pairing with rRNA |
2009-07-03 | Added | DEFINITION | Interacting selectively and non-covalently with ribosomal RNA. |
2009-07-03 | Deleted | DEFINITION | Interacting selectively with ribosomal RNA. |
2008-05-13 | Added | DEFINITION | Interacting selectively with ribosomal RNA. |
2008-05-12 | Deleted | DEFINITION | Interacting selectively with ribosomal RNA. |
2003-03-26 | Added | DEFINITION | Interacting selectively with ribosomal RNA. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0003723 (RNA binding) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2022-01-12 | Deleted | SUBSET | goslim_generic |
2018-12-11 | Added | SECONDARY | GO:0000944 (base pairing with rRNA) |
2015-05-19 | Deleted | SUBSET | goslim_ChEMBL |
2015-05-19 | Added | SUBSET | goslim_chembl |
2015-05-11 | Added | SUBSET | goslim_ChEMBL |
2013-04-18 | Updated | SUBSET | goslim_yeast |
2013-04-18 | Updated | SUBSET | goslim_generic |
2012-02-10 | Added | SUBSET | goslim_generic |
2011-08-14 | Added | SUBSET | goslim_yeast |
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