This term is obsolete.

GO:0019843 JSON

rRNA binding

Molecular Function

Definition (GO:0019843 GONUTS page)

Binding to a ribosomal RNA.

Secondary IDs

GO:0000944

2,497,311 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
base pairing with rRNA narrow

Ancestor Chart

Ancestor chart for GO:0019843
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Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0019843

Child Term Relationship to
GO:0019843
rRNA modification guide activity
is_a
B-WICH complex
capable_of
rRNA primary transcript binding
is_a
large ribosomal subunit rRNA binding
is_a
5S rRNA binding
is_a
5.8S rRNA binding
is_a
small ribosomal subunit rRNA binding
is_a

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Binding term considerations Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein B1WC40 10116 NCBP2_RAT GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein P52298 9606 NCBP2_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:7478990
NOT-qualified manual protein P52299 8355 NCBP2_XENLA GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024
NOT-qualified manual protein Q15287 9606 RNPS1_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:22388736
NOT-qualified manual protein Q23500 6239 ACOHC_CAEEL GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:12438312
NOT-qualified manual protein Q52KI8 10090 SRRM1_MOUSE GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: PMID:9531537
NOT-qualified manual protein Q6AYK1 10116 RNPS1_RAT GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein Q6QN14 9606 U17L6_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:17109758
NOT-qualified manual protein Q9CQ49 10090 NCBP2_MOUSE GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024
NOT-qualified manual protein Q9YH12 8319 LSM14_PLEWA GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:9851867

Cross-references

Database ID Description
InterPro IPR000114 Large ribosomal subunit protein uL16, bacterial-type
InterPro IPR000529 Small ribosomal subunit protein bS6
InterPro IPR000702 Large ribosomal subunit protein uL6-like
InterPro IPR001014 Large ribosomal subunit protein uL23, conserved site
InterPro IPR001912 Small ribosomal subunit protein uS4, N-terminal
InterPro IPR005813 Large ribosomal subunit protein bL20
InterPro IPR007109 Brix domain
InterPro IPR018079 Small ribosomal subunit protein uS4, conserved site
InterPro IPR019906 Large ribosomal subunit protein uL6, bacterial-type
InterPro IPR019907 Large ribosomal subunit protein uL6, archaea

Cross-Ontology Relations

Relation Other Ontology ID Term
has_primary_input CHEBI CHEBI:18111 ribosomal RNA

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0019843 based on ALL annotations
The top 100 of 2,233 co-occurring terms
Co-occurring Term PR S% #Together #Compared
rRNA binding
95.72 100.00 2,036,482 2,036,482
ribonucleoprotein complex
44.20 42.63 1,726,107 3,738,529
small ribosomal subunit
64.44 18.52 414,331 615,502
cytosolic large ribosomal subunit
43.39 16.06 405,688 894,979
structural constituent of ribosome
14.97 15.14 1,682,562 10,760,611
translation
14.77 15.07 1,763,832 11,430,029
ribosome
14.67 14.87 1,698,606 11,084,221
large ribosomal subunit
60.54 12.20 267,397 422,765
tRNA binding
25.48 11.52 343,890 1,291,960
RNA binding
11.20 9.48 678,284 5,796,616
Totals 15591725 242061752
No co-occurrence statistics for GO:0019843 based on MANUAL annotations
The top 100 of 459 co-occurring terms
Co-occurring Term PR S% #Together #Compared
rRNA binding
709.39 100.00 1,821 1,821
ribosomal small subunit assembly
188.36 16.62 560 2,109
ribosome
173.38 12.94 393 1,608
ribosomal small subunit biogenesis
152.37 11.48 360 1,676
ribosomal small subunit binding
210.81 8.72 200 673
rRNA (pseudouridine) methyltransferase activity
694.19 7.51 137 140
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
77.11 6.28 236 2,171
cytosolic small ribosomal subunit
51.18 5.77 408 5,655
mitochondrial translation
72.49 5.47 192 1,879
translation
43.54 5.04 400 6,517
Totals 8234 221306

GO Slims

This term is present in the following GO Consortium-maintained GO slims:

GO slim name Total Number of Terms in Slim
goslim_yeast 163
goslim_chembl 296

Change Log

Timestamp Action Category Detail
2022-01-12 Deleted SUBSET goslim_generic
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with ribosomal RNA.
2021-05-24 Added DEFINITION Binding to a ribosomal RNA.
2018-12-11 Added SECONDARY GO:0000944 (base pairing with rRNA)
2018-12-11 Added SYNONYM base pairing with rRNA
2015-05-19 Deleted SUBSET goslim_ChEMBL
2015-05-19 Added SUBSET goslim_chembl
2015-05-11 Added SUBSET goslim_ChEMBL
2013-04-18 Updated SUBSET goslim_yeast
2013-04-18 Updated SUBSET goslim_generic
Timestamp Action Category Detail
2003-06-10 Updated TERM rRNA binding
2003-03-19 Updated TERM rRNA binding activity
2001-12-10 Added TERM rRNA binding
Timestamp Action Category Detail
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with ribosomal RNA.
2021-05-24 Added DEFINITION Binding to a ribosomal RNA.
2018-12-11 Added SYNONYM base pairing with rRNA
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with ribosomal RNA.
2009-07-03 Deleted DEFINITION Interacting selectively with ribosomal RNA.
2008-05-13 Added DEFINITION Interacting selectively with ribosomal RNA.
2008-05-12 Deleted DEFINITION Interacting selectively with ribosomal RNA.
2003-03-26 Added DEFINITION Interacting selectively with ribosomal RNA.
Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0003723 (RNA binding)
Timestamp Action Category Detail
Timestamp Action Category Detail
2022-01-12 Deleted SUBSET goslim_generic
2018-12-11 Added SECONDARY GO:0000944 (base pairing with rRNA)
2015-05-19 Deleted SUBSET goslim_ChEMBL
2015-05-19 Added SUBSET goslim_chembl
2015-05-11 Added SUBSET goslim_ChEMBL
2013-04-18 Updated SUBSET goslim_yeast
2013-04-18 Updated SUBSET goslim_generic
2012-02-10 Added SUBSET goslim_generic
2011-08-14 Added SUBSET goslim_yeast
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