GO:0019877
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diaminopimelate biosynthetic process
Biological Process
Definition (GO:0019877 GONUTS page)
The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
diaminopimelate anabolism | exact |
diaminopimelate biosynthesis | exact |
diaminopimelate synthesis | exact |
diaminopimelate formation | exact |
Ancestor Chart
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | P95028 | 83331 | P95028_MYCTO | GO:0008610 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16952959 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR012691 | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase variant |
UniProtKB-KW | KW-0220 | Diaminopimelate biosynthesis |
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
has_primary_output | CHEBI | CHEBI:57791 | meso-2,6-diaminopimelic acid dizwitterion |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0019877 based on ALL annotations
The top 100 of 315 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
diaminopimelate biosynthetic process
|
1,098.90 | 100.00 | 177,395 | 177,395 |
lysine biosynthetic process
|
588.50 | 53.26 | 175,596 | 327,889 |
lysine biosynthetic process via diaminopimelate
|
515.59 | 46.72 | 175,793 | 374,673 |
4-hydroxy-tetrahydrodipicolinate reductase
|
925.90 | 22.70 | 42,045 | 49,901 |
4-hydroxy-tetrahydrodipicolinate synthase activity
|
506.78 | 20.19 | 46,875 | 101,644 |
aspartate-semialdehyde dehydrogenase activity
|
858.64 | 19.45 | 36,482 | 46,690 |
oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor
|
1,098.86 | 18.91 | 33,540 | 33,541 |
'de novo' L-methionine biosynthetic process
|
417.53 | 13.98 | 32,121 | 84,539 |
threonine biosynthetic process
|
217.38 | 12.32 | 43,672 | 220,772 |
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
|
986.10 | 10.34 | 18,569 | 20,693 |
Totals | 1592170 | 213175457 |
No co-occurrence statistics for GO:0019877 based on MANUAL annotations
The top 20 of 20 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
diaminopimelate biosynthetic process
|
11,136.20 | 100.00 | 116 | 116 |
4-hydroxy-tetrahydrodipicolinate reductase
|
11,023.71 | 83.76 | 98 | 99 |
lysine biosynthetic process
|
2,930.58 | 6.94 | 10 | 38 |
N-acetyldiaminopimelate deacetylase activity
|
11,136.20 | 4.31 | 5 | 5 |
chloroplast stroma
|
279.65 | 2.46 | 62 | 2,469 |
nucleotidyltransferase activity
|
229.61 | 1.69 | 10 | 485 |
lysine biosynthetic process via diaminopimelate
|
201.01 | 1.29 | 5 | 277 |
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
|
5,568.10 | 0.85 | 1 | 2 |
amino acid biosynthetic process
|
856.63 | 0.78 | 1 | 13 |
aspartate-semialdehyde dehydrogenase activity
|
359.23 | 0.68 | 1 | 31 |
Totals | 360 | 272374 |
Change Log
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- Definition / Synonyms
- Definition / Synonyms
- Relationships
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- Cross-references
- Cross-references
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-07-13 | Deleted | RELATION | is a GO:1901566 (obsolete organonitrogen compound biosynthetic process) |
2024-03-26 | Added | RELATION | is a GO:0008652 (amino acid biosynthetic process) |
2024-03-21 | Added | RELATION | is a GO:1901566 (obsolete organonitrogen compound biosynthetic process) |
2024-03-21 | Added | RELATION | is a GO:1901570 (fatty acid derivative biosynthetic process) |
2020-11-03 | Deleted | RELATION | is a GO:0008652 (amino acid biosynthetic process) |
2016-11-28 | Added | RELATION | is a GO:0008652 (amino acid biosynthetic process) |
2016-06-22 | Deleted | RELATION | is a GO:0008652 (amino acid biosynthetic process) |
2012-11-15 | Deleted | RELATION | is a GO:1901566 (obsolete organonitrogen compound biosynthetic process) |
2012-11-15 | Added | RELATION | is a GO:0008652 (amino acid biosynthetic process) |
2012-11-05 | Added | RELATION | is a GO:1901566 (obsolete organonitrogen compound biosynthetic process) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2007-01-15 | Updated | TERM | diaminopimelate biosynthetic process |
2002-01-08 | Added | TERM | diaminopimelate biosynthesis |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-05-13 | Added | DEFINITION | The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls. |
2008-05-12 | Deleted | DEFINITION | The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls. |
2007-08-09 | Deleted | SYNONYM | diaminopimelate synthesis |
2007-08-09 | Deleted | SYNONYM | diaminopimelate formation |
2007-08-09 | Deleted | SYNONYM | diaminopimelate anabolism |
2007-08-09 | Added | SYNONYM | diaminopimelate synthesis |
2007-08-09 | Added | SYNONYM | diaminopimelate formation |
2007-08-09 | Added | SYNONYM | diaminopimelate anabolism |
2007-08-09 | Deleted | SYNONYM | diaminopimelate biosynthesis |
2007-08-09 | Added | SYNONYM | diaminopimelate biosynthesis |
2007-01-15 | Added | SYNONYM | diaminopimelate biosynthesis |
2006-05-04 | Updated | DEFINITION | The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls. |
2006-02-16 | Updated | DEFINITION | The formation from simpler components of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls. |
2006-02-11 | Updated | DEFINITION | The formation from simpler components of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram negative bacterial cell walls. |
2005-08-10 | Added | SYNONYM | diaminopimelate formation |
2005-08-10 | Added | SYNONYM | diaminopimelate synthesis |
2005-08-10 | Added | SYNONYM | diaminopimelate anabolism |
2002-11-27 | Added | DEFINITION | The formation from simpler components of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-07-13 | Deleted | RELATION | is a GO:1901566 (obsolete organonitrogen compound biosynthetic process) |
2024-03-26 | Added | RELATION | is a GO:0008652 (amino acid biosynthetic process) |
2024-03-21 | Added | RELATION | is a GO:1901566 (obsolete organonitrogen compound biosynthetic process) |
2024-03-21 | Added | RELATION | is a GO:1901570 (fatty acid derivative biosynthetic process) |
2020-11-03 | Deleted | RELATION | is a GO:0008652 (amino acid biosynthetic process) |
2016-11-28 | Added | RELATION | is a GO:0008652 (amino acid biosynthetic process) |
2016-06-22 | Deleted | RELATION | is a GO:0008652 (amino acid biosynthetic process) |
2012-11-15 | Deleted | RELATION | is a GO:1901566 (obsolete organonitrogen compound biosynthetic process) |
2012-11-15 | Added | RELATION | is a GO:0008652 (amino acid biosynthetic process) |
2012-11-05 | Added | RELATION | is a GO:1901566 (obsolete organonitrogen compound biosynthetic process) |
2012-11-05 | Deleted | RELATION | part of GO:0009089 (lysine biosynthetic process via diaminopimelate) |
2012-11-02 | Added | RELATION | is a GO:0043650 (dicarboxylic acid biosynthetic process) |
2012-11-02 | Deleted | RELATION | is a GO:0046394 (carboxylic acid biosynthetic process) |
2008-04-01 | Updated | RELATION | part of GO:0009089 (lysine biosynthetic process via diaminopimelate) |
2008-04-01 | Updated | RELATION | is a GO:0046451 (diaminopimelate metabolic process) |
2008-04-01 | Updated | RELATION | is a GO:0046394 (carboxylic acid biosynthetic process) |
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