This term is obsolete.

GO:0030623 JSON

U5 snRNA binding

Molecular Function

Definition (GO:0030623 GONUTS page)

Binding to a U5 small nuclear RNA (U5 snRNA).

11,529 annotations

Ancestor Chart

Ancestor chart for GO:0030623
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Ancestor chart

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Binding term considerations Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein B1WC40 10116 NCBP2_RAT GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein P52298 9606 NCBP2_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:7478990
NOT-qualified manual protein P52299 8355 NCBP2_XENLA GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024
NOT-qualified manual protein Q15287 9606 RNPS1_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:22388736
NOT-qualified manual protein Q23500 6239 ACOHC_CAEEL GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:12438312
NOT-qualified manual protein Q52KI8 10090 SRRM1_MOUSE GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: PMID:9531537
NOT-qualified manual protein Q6AYK1 10116 RNPS1_RAT GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein Q6QN14 9606 U17L6_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:17109758
NOT-qualified manual protein Q9CQ49 10090 NCBP2_MOUSE GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024
NOT-qualified manual protein Q9YH12 8319 LSM14_PLEWA GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:9851867

Cross-references

Database ID Description
InterPro IPR019581 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0030623 based on ALL annotations
The top 100 of 300 co-occurring terms
Co-occurring Term PR S% #Together #Compared
U5 snRNA binding
17,090.90 100.00 11,406 11,406
pre-mRNA intronic binding
9,800.22 38.97 6,260 10,917
U2 snRNA binding
7,652.24 33.59 6,541 14,609
U1 snRNA binding
6,789.65 30.67 6,541 16,465
U6 snRNA binding
3,211.18 16.57 6,658 35,436
U2-type catalytic step 2 spliceosome
3,443.73 15.71 4,745 23,549
U5 snRNP
2,467.13 13.00 6,465 44,786
catalytic step 2 spliceosome
742.37 4.20 6,368 146,604
spliceosomal tri-snRNP complex assembly
650.83 3.70 6,449 169,352
mRNA splicing, via spliceosome
586.55 3.43 11,117 323,929
Totals 138276 41834104
No co-occurrence statistics for GO:0030623 based on MANUAL annotations
The top 100 of 117 co-occurring terms
Co-occurring Term PR S% #Together #Compared
U5 snRNA binding
5,316.05 100.00 243 243
pre-mRNA intronic binding
2,302.98 30.00 120 277
spliceosomal tri-snRNP complex assembly
1,601.38 23.19 122 405
U2 snRNA binding
1,421.46 21.21 123 460
U1 snRNA binding
1,250.24 19.13 123 523
U6 snRNA binding
1,178.15 18.22 123 555
U2-type catalytic step 2 spliceosome
922.56 14.81 122 703
U5 snRNP
474.85 8.22 123 1,377
U4/U6 x U5 tri-snRNP complex
299.09 5.34 124 2,204
U2-type precatalytic spliceosome
291.73 3.25 18 328
Totals 1950 243381

Change Log

Timestamp Action Category Detail
2021-05-24 Added DEFINITION Binding to a U5 small nuclear RNA (U5 snRNA).
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with the U5 small nuclear RNA (U5 snRNA).
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with the U5 small nuclear RNA (U5 snRNA).
2009-07-03 Deleted DEFINITION Interacting selectively with the U5 small nuclear RNA (U5 snRNA).
2008-05-13 Added DEFINITION Interacting selectively with the U5 small nuclear RNA (U5 snRNA).
2008-05-12 Deleted DEFINITION Interacting selectively with the U5 small nuclear RNA (U5 snRNA).
2008-04-01 Updated RELATION is a GO:0017069 (snRNA binding)
2003-06-10 Updated TERM U5 snRNA binding
2003-03-26 Added DEFINITION Interacting selectively with the U5 small nuclear RNA (U5 snRNA).
2003-03-19 Updated TERM U5 snRNA binding activity
Timestamp Action Category Detail
2003-06-10 Updated TERM U5 snRNA binding
2003-03-19 Updated TERM U5 snRNA binding activity
2002-05-10 Added TERM U5 snRNA binding
Timestamp Action Category Detail
2021-05-24 Added DEFINITION Binding to a U5 small nuclear RNA (U5 snRNA).
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with the U5 small nuclear RNA (U5 snRNA).
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with the U5 small nuclear RNA (U5 snRNA).
2009-07-03 Deleted DEFINITION Interacting selectively with the U5 small nuclear RNA (U5 snRNA).
2008-05-13 Added DEFINITION Interacting selectively with the U5 small nuclear RNA (U5 snRNA).
2008-05-12 Deleted DEFINITION Interacting selectively with the U5 small nuclear RNA (U5 snRNA).
2003-03-26 Added DEFINITION Interacting selectively with the U5 small nuclear RNA (U5 snRNA).
Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0017069 (snRNA binding)
Timestamp Action Category Detail
Timestamp Action Category Detail
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