GO:0030623
JSON
U5 snRNA binding
Molecular Function
Definition (GO:0030623 GONUTS page)
Binding to a U5 small nuclear RNA (U5 snRNA).
Ancestor Chart
Ancestor chart for GO:0030623
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Binding term considerations | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | B1WC40 | 10116 | NCBP2_RAT | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | P52298 | 9606 | NCBP2_HUMAN | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:7478990 | |
NOT-qualified manual | protein | P52299 | 8355 | NCBP2_XENLA | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024 | |
NOT-qualified manual | protein | Q15287 | 9606 | RNPS1_HUMAN | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:22388736 | |
NOT-qualified manual | protein | Q23500 | 6239 | ACOHC_CAEEL | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:12438312 | |
NOT-qualified manual | protein | Q52KI8 | 10090 | SRRM1_MOUSE | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: PMID:9531537 | |
NOT-qualified manual | protein | Q6AYK1 | 10116 | RNPS1_RAT | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | Q6QN14 | 9606 | U17L6_HUMAN | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:17109758 | |
NOT-qualified manual | protein | Q9CQ49 | 10090 | NCBP2_MOUSE | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024 | |
NOT-qualified manual | protein | Q9YH12 | 8319 | LSM14_PLEWA | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:9851867 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR019581 | Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0030623 based on ALL annotations
The top 100 of 300 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
U5 snRNA binding
|
17,090.90 | 100.00 | 11,406 | 11,406 |
pre-mRNA intronic binding
|
9,800.22 | 38.97 | 6,260 | 10,917 |
U2 snRNA binding
|
7,652.24 | 33.59 | 6,541 | 14,609 |
U1 snRNA binding
|
6,789.65 | 30.67 | 6,541 | 16,465 |
U6 snRNA binding
|
3,211.18 | 16.57 | 6,658 | 35,436 |
U2-type catalytic step 2 spliceosome
|
3,443.73 | 15.71 | 4,745 | 23,549 |
U5 snRNP
|
2,467.13 | 13.00 | 6,465 | 44,786 |
catalytic step 2 spliceosome
|
742.37 | 4.20 | 6,368 | 146,604 |
spliceosomal tri-snRNP complex assembly
|
650.83 | 3.70 | 6,449 | 169,352 |
mRNA splicing, via spliceosome
|
586.55 | 3.43 | 11,117 | 323,929 |
Totals | 138276 | 41834104 |
No co-occurrence statistics for GO:0030623 based on MANUAL annotations
The top 100 of 117 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
U5 snRNA binding
|
5,316.05 | 100.00 | 243 | 243 |
pre-mRNA intronic binding
|
2,302.98 | 30.00 | 120 | 277 |
spliceosomal tri-snRNP complex assembly
|
1,601.38 | 23.19 | 122 | 405 |
U2 snRNA binding
|
1,421.46 | 21.21 | 123 | 460 |
U1 snRNA binding
|
1,250.24 | 19.13 | 123 | 523 |
U6 snRNA binding
|
1,178.15 | 18.22 | 123 | 555 |
U2-type catalytic step 2 spliceosome
|
922.56 | 14.81 | 122 | 703 |
U5 snRNP
|
474.85 | 8.22 | 123 | 1,377 |
U4/U6 x U5 tri-snRNP complex
|
299.09 | 5.34 | 124 | 2,204 |
U2-type precatalytic spliceosome
|
291.73 | 3.25 | 18 | 328 |
Totals | 1950 | 243381 |
Change Log
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- Definition / Synonyms
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Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Added | DEFINITION | Binding to a U5 small nuclear RNA (U5 snRNA). |
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with the U5 small nuclear RNA (U5 snRNA). |
2009-07-03 | Added | DEFINITION | Interacting selectively and non-covalently with the U5 small nuclear RNA (U5 snRNA). |
2009-07-03 | Deleted | DEFINITION | Interacting selectively with the U5 small nuclear RNA (U5 snRNA). |
2008-05-13 | Added | DEFINITION | Interacting selectively with the U5 small nuclear RNA (U5 snRNA). |
2008-05-12 | Deleted | DEFINITION | Interacting selectively with the U5 small nuclear RNA (U5 snRNA). |
2008-04-01 | Updated | RELATION | is a GO:0017069 (snRNA binding) |
2003-06-10 | Updated | TERM | U5 snRNA binding |
2003-03-26 | Added | DEFINITION | Interacting selectively with the U5 small nuclear RNA (U5 snRNA). |
2003-03-19 | Updated | TERM | U5 snRNA binding activity |
Timestamp | Action | Category | Detail |
---|---|---|---|
2003-06-10 | Updated | TERM | U5 snRNA binding |
2003-03-19 | Updated | TERM | U5 snRNA binding activity |
2002-05-10 | Added | TERM | U5 snRNA binding |
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Added | DEFINITION | Binding to a U5 small nuclear RNA (U5 snRNA). |
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with the U5 small nuclear RNA (U5 snRNA). |
2009-07-03 | Added | DEFINITION | Interacting selectively and non-covalently with the U5 small nuclear RNA (U5 snRNA). |
2009-07-03 | Deleted | DEFINITION | Interacting selectively with the U5 small nuclear RNA (U5 snRNA). |
2008-05-13 | Added | DEFINITION | Interacting selectively with the U5 small nuclear RNA (U5 snRNA). |
2008-05-12 | Deleted | DEFINITION | Interacting selectively with the U5 small nuclear RNA (U5 snRNA). |
2003-03-26 | Added | DEFINITION | Interacting selectively with the U5 small nuclear RNA (U5 snRNA). |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0017069 (snRNA binding) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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