This term is obsolete.

GO:0030628 JSON

pre-mRNA 3'-splice site binding

Molecular Function

Definition (GO:0030628 GONUTS page)

Binding to a pre-mRNA 3' splice site sequence.

5,665 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
pre-mRNA 3' splice site binding exact

Ancestor Chart

Ancestor chart for GO:0030628
Chart options
Ancestor chart

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Binding term considerations Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A0A0U1RRV7 10116 A0A0U1RRV7_RAT GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I5ZSN8 10116 A0A8I5ZSN8_RAT GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A2L6 10116 A0A8I6A2L6_RAT GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A2P1 10116 A0A8I6A2P1_RAT GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A6JJT3 10116 A6JJT3_RAT GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein B1WC40 10116 NCBP2_RAT GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein P52298 9606 NCBP2_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:7478990
NOT-qualified manual protein P52299 8355 NCBP2_XENLA GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024
NOT-qualified manual protein P84103 9606 SRSF3_HUMAN GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:32440474
NOT-qualified manual protein Q0ZFS8 10116 Q0ZFS8_RAT GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096

Cross-references

Database ID Description
InterPro IPR039974 Pre-mRNA-splicing factor SLU7

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0030628 based on ALL annotations
The top 100 of 219 co-occurring terms
Co-occurring Term PR S% #Together #Compared
pre-mRNA 3'-splice site binding
34,600.42 100.00 5,634 5,634
U2AF complex
2,651.48 4.88 667 8,704
poly-pyrimidine tract binding
28,873.46 4.26 242 290
spliceosomal complex
714.01 2.06 5,329 258,238
second spliceosomal transesterification activity
6,352.86 1.83 112 610
mRNA 3'-splice site recognition
7,037.37 1.78 108 531
mRNA splicing, via spliceosome
576.91 1.67 5,401 323,929
commitment complex
888.48 1.65 247 9,619
RNA splicing
440.27 1.27 5,287 415,501
RNA splicing, via transesterification reactions
1,057.47 1.14 100 3,272
Totals 37405 25682893
No co-occurrence statistics for GO:0030628 based on MANUAL annotations
The top 100 of 138 co-occurring terms
Co-occurring Term PR S% #Together #Compared
pre-mRNA 3'-splice site binding
2,428.19 100.00 532 532
U2AF complex
2,382.55 96.31 522 532
poly-pyrimidine tract binding
2,217.44 43.60 242 265
commitment complex
873.42 25.08 241 670
spliceosomal complex assembly
560.18 18.16 245 1,062
U2-type prespliceosome
333.06 11.77 241 1,757
spliceosomal complex
256.94 9.74 293 2,769
nuclear speck
179.02 6.81 252 3,418
mRNA splicing, via spliceosome
80.92 3.25 298 8,942
mRNA 3'-splice site recognition
119.42 0.93 6 122
Totals 3050 81097

Change Log

Timestamp Action Category Detail
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence.
2021-05-24 Added DEFINITION Binding to a pre-mRNA 3' splice site sequence.
2011-09-18 Deleted RELATION is a GO:0003729 (mRNA binding)
2011-09-18 Added RELATION is a GO:0036002 (pre-mRNA binding)
2009-07-03 Deleted DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence.
2008-10-02 Deleted RELATION is a GO:0031202 (RNA splicing factor activity, transesterification mechanism)
2008-05-13 Added DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
2008-05-12 Deleted DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
2008-04-01 Updated RELATION is a GO:0003729 (mRNA binding)
Timestamp Action Category Detail
2004-02-26 Updated TERM pre-mRNA 3'-splice site binding
2003-06-10 Updated TERM pre-mRNA 3' splice site binding
2003-03-19 Updated TERM pre-mRNA 3' splice site binding activity
2002-05-10 Added TERM 3' splice site binding
Timestamp Action Category Detail
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence.
2021-05-24 Added DEFINITION Binding to a pre-mRNA 3' splice site sequence.
2009-07-03 Deleted DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence.
2008-05-13 Added DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
2008-05-12 Deleted DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
2007-08-09 Added SYNONYM pre-mRNA 3' splice site binding
2007-08-09 Deleted SYNONYM pre-mRNA 3' splice site binding
2004-04-19 Added SYNONYM pre-mRNA 3' splice site binding
2004-04-16 Deleted SYNONYM pre-mRNA 3' splice site binding
2004-02-26 Added SYNONYM pre-mRNA 3' splice site binding
2003-03-26 Added DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
Timestamp Action Category Detail
2011-09-18 Deleted RELATION is a GO:0003729 (mRNA binding)
2011-09-18 Added RELATION is a GO:0036002 (pre-mRNA binding)
2008-10-02 Deleted RELATION is a GO:0031202 (RNA splicing factor activity, transesterification mechanism)
2008-04-01 Updated RELATION is a GO:0003729 (mRNA binding)
2008-04-01 Updated RELATION is a GO:0031202 (RNA splicing factor activity, transesterification mechanism)
Timestamp Action Category Detail
Timestamp Action Category Detail
Please Wait...

Not found :(

Sorry, but the Term you were trying to view does not exist.

Reported error:

It looks like this may have been caused by:

  • a mistyped URL
  • an out-of-date link
This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our Privacy Notice and Terms of Use.