This term is obsolete.

GO:0030628 JSON

pre-mRNA 3'-splice site binding

Molecular Function

Definition (GO:0030628 GONUTS page)

Binding to a pre-mRNA 3' splice site sequence.

5,890 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
pre-mRNA 3' splice site binding exact

Ancestor Chart

Ancestor chart for GO:0030628
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Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Binding term considerations Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A0A0U1RRV7 10116 A0A0U1RRV7_RAT GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I5ZSN8 10116 A0A8I5ZSN8_RAT GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A2L6 10116 A0A8I6A2L6_RAT GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6A2P1 10116 A0A8I6A2P1_RAT GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A6JJT3 10116 A6JJT3_RAT GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein B1WC40 10116 NCBP2_RAT GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein P52298 9606 NCBP2_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:7478990
NOT-qualified manual protein P52299 8355 NCBP2_XENLA GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024
NOT-qualified manual protein P84103 9606 SRSF3_HUMAN GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:32440474
NOT-qualified manual protein Q0ZFS8 10116 Q0ZFS8_RAT GO:0036002 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096

Cross-references

Database ID Description
InterPro IPR039974 Pre-mRNA-splicing factor SLU7

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0030628 based on ALL annotations
The top 100 of 216 co-occurring terms
Co-occurring Term PR S% #Together #Compared
GO:0030628
pre-mRNA 3'-splice site binding
33,855.27 100.00 5,853 5,853
GO:0089701
U2AF complex
2,673.56 5.06 721 9,130
GO:0008187
poly-pyrimidine tract binding
28,776.98 4.61 272 320
GO:0005681
spliceosomal complex
716.41 2.11 5,523 261,000
GO:0000243
commitment complex
933.03 1.77 277 10,051
GO:0000386
second spliceosomal transesterification activity
6,216.05 1.76 112 610
GO:0000389
mRNA 3'-splice site recognition
6,846.43 1.73 109 539
GO:0000398
mRNA splicing, via spliceosome
563.56 1.66 5,591 335,873
GO:0008380
RNA splicing
453.22 1.34 5,489 410,025
GO:0000375
RNA splicing, via transesterification reactions
958.53 1.08 100 3,532
Totals 39284 29276721
No co-occurrence statistics for GO:0030628 based on MANUAL annotations
The top 100 of 131 co-occurring terms
Co-occurring Term PR S% #Together #Compared
GO:0030628
pre-mRNA 3'-splice site binding
2,388.38 100.00 591 591
GO:0089701
U2AF complex
2,347.97 96.67 581 591
GO:0008187
poly-pyrimidine tract binding
2,202.17 44.30 272 295
GO:0000243
commitment complex
872.31 25.52 271 742
GO:0000245
spliceosomal complex assembly
561.37 18.51 275 1,170
GO:0071004
U2-type prespliceosome
339.76 12.18 271 1,905
GO:0005681
spliceosomal complex
259.55 9.96 322 2,963
GO:0016607
nuclear speck
186.62 7.20 282 3,609
GO:0000398
mRNA splicing, via spliceosome
82.57 3.36 327 9,459
GO:0000389
mRNA 3'-splice site recognition
111.96 0.84 6 128
Totals 3376 88417

Change Log

Timestamp Action Category Detail
2021-05-24 Added DEFINITION Binding to a pre-mRNA 3' splice site sequence.
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence.
2011-09-18 Added RELATION is a GO:0036002 (pre-mRNA binding)
2011-09-18 Deleted RELATION is a GO:0003729 (mRNA binding)
2009-07-03 Deleted DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence.
2008-10-02 Deleted RELATION is a GO:0031202 (RNA splicing factor activity, transesterification mechanism)
2008-05-13 Added DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
2008-05-12 Deleted DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
2008-04-01 Updated RELATION is a GO:0031202 (RNA splicing factor activity, transesterification mechanism)
Timestamp Action Category Detail
2004-02-26 Updated TERM pre-mRNA 3'-splice site binding
2003-06-10 Updated TERM pre-mRNA 3' splice site binding
2003-03-19 Updated TERM pre-mRNA 3' splice site binding activity
2002-05-10 Added TERM 3' splice site binding
Timestamp Action Category Detail
2021-05-24 Added DEFINITION Binding to a pre-mRNA 3' splice site sequence.
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence.
2009-07-03 Deleted DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence.
2008-05-13 Added DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
2008-05-12 Deleted DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
2007-08-09 Added SYNONYM pre-mRNA 3' splice site binding
2007-08-09 Deleted SYNONYM pre-mRNA 3' splice site binding
2004-04-19 Added SYNONYM pre-mRNA 3' splice site binding
2004-04-16 Deleted SYNONYM pre-mRNA 3' splice site binding
2004-02-26 Added SYNONYM pre-mRNA 3' splice site binding
2003-03-26 Added DEFINITION Interacting selectively with the pre-mRNA 3' splice site sequence.
Timestamp Action Category Detail
2011-09-18 Added RELATION is a GO:0036002 (pre-mRNA binding)
2011-09-18 Deleted RELATION is a GO:0003729 (mRNA binding)
2008-10-02 Deleted RELATION is a GO:0031202 (RNA splicing factor activity, transesterification mechanism)
2008-04-01 Updated RELATION is a GO:0031202 (RNA splicing factor activity, transesterification mechanism)
2008-04-01 Updated RELATION is a GO:0003729 (mRNA binding)
Timestamp Action Category Detail
Timestamp Action Category Detail
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