GO:0031410
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cytoplasmic vesicle
Cellular Component
Definition (GO:0031410 GONUTS page)
A vesicle found in the cytoplasm of a cell.
Secondary IDs
GO:0016023
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
cytoplasmic, membrane-bounded vesicle | related |
cytoplasmic membrane-enclosed vesicle | related |
cytoplasmic membrane bounded vesicle | related |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0031410
Child Term | Relationship to GO:0031410 |
---|---|
chloroplast vesicle
|
is_a |
pericanalicular vesicle
|
is_a |
transport vesicle
|
is_a |
coated vesicle
|
is_a |
Golgi-associated vesicle
|
is_a |
aleurone grain
|
is_a |
endocytic vesicle
|
is_a |
amorphous vesicle
|
is_a |
multivesicular body, internal vesicle
|
is_a |
plasma membrane light-harvesting complex
|
part_of |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0031410 | cytoplasmic vesicle | Only in Taxon | 131567 | cellular organisms |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A096MJ18 | 10116 | A0A096MJ18_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A096MK97 | 10116 | A0A096MK97_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0D1E8X3 | 237631 | A0A0D1E8X3_USTMA | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A0G2JZ79 | 10116 | SIR1_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1D8PHF8 | 237561 | A0A1D8PHF8_CANAL | GO:0031410 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:8760936 | |
NOT-qualified manual | protein | A0A1L8G9S0 | 8355 | A0A1L8G9S0_XENLA | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A1S4L3K3 | 6945 | A0A1S4L3K3_IXOSC | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A1W2Q633 | 10116 | A0A1W2Q633_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A2K5ATM2 | 6239 | A0A2K5ATM2_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2K5ATM9 | 6239 | A0A2K5ATM9_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 |
Cross-references
Database | ID | Description |
---|---|---|
NIF_Subcellular | sao180601769 | |
UniProtKB-KW | KW-0968 | Cytoplasmic vesicle |
Replaces
This term can be used instead of these obsolete terms:
GO Identifier | GO Term Name | Reason |
---|---|---|
GO:0044433 | obsolete cytoplasmic vesicle part | consider GO:0031410 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0031410 based on ALL annotations
The top 100 of 7,707 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
cytoplasmic vesicle
|
501.05 | 100.00 | 389,064 | 389,064 |
cytoplasmic vesicle membrane
|
412.55 | 20.19 | 82,094 | 99,704 |
vesicle-mediated transport
|
90.04 | 11.94 | 102,085 | 568,096 |
intracellular protein transport
|
70.99 | 9.44 | 85,810 | 605,631 |
COPI-coated vesicle membrane
|
466.49 | 8.90 | 34,855 | 37,437 |
endoplasmic reticulum to Golgi vesicle-mediated transport
|
107.10 | 8.43 | 47,551 | 222,450 |
COPI vesicle coat
|
375.88 | 8.06 | 32,210 | 42,936 |
Golgi apparatus
|
47.52 | 7.68 | 111,844 | 1,179,370 |
ER to Golgi transport vesicle membrane
|
219.43 | 6.95 | 29,678 | 67,767 |
clathrin-coated pit
|
193.91 | 6.51 | 28,250 | 72,994 |
Totals | 2255751 | 21345692 |
No co-occurrence statistics for GO:0031410 based on MANUAL annotations
The top 100 of 3,967 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
cytoplasmic vesicle
|
404.45 | 100.00 | 3,194 | 3,194 |
cortical cytoskeleton organization
|
336.18 | 15.82 | 522 | 628 |
establishment or maintenance of cell polarity
|
206.34 | 14.22 | 526 | 1,031 |
cell projection
|
160.93 | 12.47 | 491 | 1,234 |
regulation of actin cytoskeleton organization
|
126.14 | 12.36 | 543 | 1,741 |
regulation of cell shape
|
116.78 | 12.03 | 546 | 1,891 |
cytoskeleton
|
63.84 | 8.86 | 537 | 3,402 |
protein kinase binding
|
53.69 | 8.59 | 625 | 4,708 |
actin filament organization
|
55.01 | 8.20 | 547 | 4,022 |
protein targeting
|
184.26 | 5.83 | 200 | 439 |
Totals | 16955 | 202997 |
GO Slims
This term is present in the following GO Consortium-maintained GO slims:
GO slim name | Total Number of Terms in Slim |
---|---|
goslim_mouse | 45 |
goslim_agr | 53 |
goslim_generic | 141 |
goslim_chembl | 296 |
goslim_candida | 86 |
goslim_yeast | 163 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2022-04-08 | Deleted | SUBSET | goslim_aspergillus |
2019-09-12 | Deleted | RELATION | is a GO:0044444 (obsolete cytoplasmic part) |
2017-07-08 | Added | SUBSET | goslim_agr |
2016-12-17 | Added | SUBSET | goslim_mouse |
2016-10-14 | Added | SUBSET | goslim_chembl |
2016-10-14 | Added | SECONDARY | GO:0016023 (cytoplasmic, membrane-bounded vesicle) |
2016-10-14 | Added | SUBSET | goslim_generic |
2016-10-14 | Added | SYNONYM | cytoplasmic membrane bounded vesicle |
2016-10-14 | Added | SYNONYM | cytoplasmic membrane-enclosed vesicle |
Timestamp | Action | Category | Detail |
---|---|---|---|
2005-05-16 | Added | TERM | cytoplasmic vesicle |
Timestamp | Action | Category | Detail |
---|---|---|---|
2016-10-14 | Added | SYNONYM | cytoplasmic membrane bounded vesicle |
2016-10-14 | Added | SYNONYM | cytoplasmic membrane-enclosed vesicle |
2016-10-14 | Added | SYNONYM | cytoplasmic, membrane-bounded vesicle |
2016-03-31 | Added | DEFINITION | A vesicle found in the cytoplasm of a cell. |
2016-03-31 | Deleted | DEFINITION | A vesicle formed of membrane or protein, found in the cytoplasm of a cell. |
2008-05-13 | Added | DEFINITION | A vesicle formed of membrane or protein, found in the cytoplasm of a cell. |
2008-05-12 | Deleted | DEFINITION | A vesicle formed of membrane or protein, found in the cytoplasm of a cell. |
2005-05-16 | Added | DEFINITION | A vesicle formed of membrane or protein, found in the cytoplasm of a cell. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2019-09-12 | Deleted | RELATION | is a GO:0044444 (obsolete cytoplasmic part) |
2016-03-31 | Added | RELATION | is a GO:0097708 (intracellular vesicle) |
2016-03-31 | Deleted | RELATION | is a GO:0031982 (vesicle) |
2016-03-31 | Deleted | RELATION | is a GO:0043229 (intracellular organelle) |
2015-04-24 | Added | RELATION | part of GO:0005737 (cytoplasm) |
2013-02-02 | Deleted | RELATION | part of GO:0005737 (cytoplasm) |
2012-10-29 | Added | RELATION | part of GO:0005737 (cytoplasm) |
2008-04-01 | Updated | RELATION | is a GO:0044444 (obsolete cytoplasmic part) |
2008-04-01 | Updated | RELATION | is a GO:0031982 (vesicle) |
2008-04-01 | Updated | RELATION | is a GO:0043229 (intracellular organelle) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2010-02-04 | Added | XREF | NIF_Subcellular:sao180601769 |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2022-04-08 | Deleted | SUBSET | goslim_aspergillus |
2017-07-08 | Added | SUBSET | goslim_agr |
2016-12-17 | Added | SUBSET | goslim_mouse |
2016-10-14 | Added | SUBSET | goslim_chembl |
2016-10-14 | Added | SECONDARY | GO:0016023 (cytoplasmic, membrane-bounded vesicle) |
2016-10-14 | Added | SUBSET | goslim_generic |
2016-10-14 | Added | SUBSET | goslim_aspergillus |
2016-10-14 | Added | SUBSET | goslim_candida |
2016-10-14 | Added | SUBSET | goslim_yeast |
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