This term is obsolete.

GO:0031410 JSON

cytoplasmic vesicle

Cellular Component

Definition (GO:0031410 GONUTS page)

A vesicle found in the cytoplasm of a cell.

Secondary IDs

GO:0016023

2,832,509 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
cytoplasmic, membrane-bounded vesicle related
cytoplasmic membrane-enclosed vesicle related
cytoplasmic membrane bounded vesicle related

Ancestor Chart

Ancestor chart for GO:0031410
Chart options
Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0031410

Child Term Relationship to
GO:0031410
chloroplast vesicle
is_a
pericanalicular vesicle
is_a
transport vesicle
is_a
coated vesicle
is_a
Golgi-associated vesicle
is_a
aleurone grain
is_a
endocytic vesicle
is_a
amorphous vesicle
is_a
multivesicular body, internal vesicle
is_a
plasma membrane light-harvesting complex
part_of

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0031410 cytoplasmic vesicle Only in Taxon 131567 cellular organisms

More information on taxon constraints in GO is available here

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A0A096MJ18 10116 A0A096MJ18_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A096MK97 10116 A0A096MK97_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0D1E8X3 237631 A0A0D1E8X3_USTMA GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A0G2JZ79 10116 SIR1_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1D8PHF8 237561 A0A1D8PHF8_CANAL GO:0031410 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:8760936
NOT-qualified manual protein A0A1L8G9S0 8355 A0A1L8G9S0_XENLA GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A1S4L3K3 6945 A0A1S4L3K3_IXOSC GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A1W2Q633 10116 A0A1W2Q633_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A2K5ATM2 6239 A0A2K5ATM2_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A2K5ATM9 6239 A0A2K5ATM9_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033

Cross-references

Database ID Description
NIF_Subcellular sao180601769
UniProtKB-KW KW-0968 Cytoplasmic vesicle

Replaces

This term can be used instead of these obsolete terms:

GO Identifier GO Term Name Reason
GO:0044433 obsolete cytoplasmic vesicle part consider GO:0031410

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0031410 based on ALL annotations
The top 100 of 7,707 co-occurring terms
Co-occurring Term PR S% #Together #Compared
cytoplasmic vesicle
501.05 100.00 389,064 389,064
cytoplasmic vesicle membrane
412.55 20.19 82,094 99,704
vesicle-mediated transport
90.04 11.94 102,085 568,096
intracellular protein transport
70.99 9.44 85,810 605,631
COPI-coated vesicle membrane
466.49 8.90 34,855 37,437
endoplasmic reticulum to Golgi vesicle-mediated transport
107.10 8.43 47,551 222,450
COPI vesicle coat
375.88 8.06 32,210 42,936
Golgi apparatus
47.52 7.68 111,844 1,179,370
ER to Golgi transport vesicle membrane
219.43 6.95 29,678 67,767
clathrin-coated pit
193.91 6.51 28,250 72,994
Totals 2255751 21345692
No co-occurrence statistics for GO:0031410 based on MANUAL annotations
The top 100 of 3,967 co-occurring terms
Co-occurring Term PR S% #Together #Compared
cytoplasmic vesicle
404.45 100.00 3,194 3,194
cortical cytoskeleton organization
336.18 15.82 522 628
establishment or maintenance of cell polarity
206.34 14.22 526 1,031
cell projection
160.93 12.47 491 1,234
regulation of actin cytoskeleton organization
126.14 12.36 543 1,741
regulation of cell shape
116.78 12.03 546 1,891
cytoskeleton
63.84 8.86 537 3,402
protein kinase binding
53.69 8.59 625 4,708
actin filament organization
55.01 8.20 547 4,022
protein targeting
184.26 5.83 200 439
Totals 16955 202997

GO Slims

This term is present in the following GO Consortium-maintained GO slims:

GO slim name Total Number of Terms in Slim
goslim_mouse 45
goslim_agr 53
goslim_generic 141
goslim_chembl 296
goslim_candida 86
goslim_yeast 163

Change Log

Timestamp Action Category Detail
2024-09-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
2022-04-08 Deleted SUBSET goslim_aspergillus
2019-09-12 Deleted RELATION is a GO:0044444 (obsolete cytoplasmic part)
2017-07-08 Added SUBSET goslim_agr
2016-12-17 Added SUBSET goslim_mouse
2016-10-14 Added SUBSET goslim_chembl
2016-10-14 Added SECONDARY GO:0016023 (cytoplasmic, membrane-bounded vesicle)
2016-10-14 Added SUBSET goslim_generic
2016-10-14 Added SYNONYM cytoplasmic membrane bounded vesicle
2016-10-14 Added SYNONYM cytoplasmic membrane-enclosed vesicle
Timestamp Action Category Detail
2005-05-16 Added TERM cytoplasmic vesicle
Timestamp Action Category Detail
2016-10-14 Added SYNONYM cytoplasmic membrane bounded vesicle
2016-10-14 Added SYNONYM cytoplasmic membrane-enclosed vesicle
2016-10-14 Added SYNONYM cytoplasmic, membrane-bounded vesicle
2016-03-31 Added DEFINITION A vesicle found in the cytoplasm of a cell.
2016-03-31 Deleted DEFINITION A vesicle formed of membrane or protein, found in the cytoplasm of a cell.
2008-05-13 Added DEFINITION A vesicle formed of membrane or protein, found in the cytoplasm of a cell.
2008-05-12 Deleted DEFINITION A vesicle formed of membrane or protein, found in the cytoplasm of a cell.
2005-05-16 Added DEFINITION A vesicle formed of membrane or protein, found in the cytoplasm of a cell.
Timestamp Action Category Detail
2019-09-12 Deleted RELATION is a GO:0044444 (obsolete cytoplasmic part)
2016-03-31 Added RELATION is a GO:0097708 (intracellular vesicle)
2016-03-31 Deleted RELATION is a GO:0031982 (vesicle)
2016-03-31 Deleted RELATION is a GO:0043229 (intracellular organelle)
2015-04-24 Added RELATION part of GO:0005737 (cytoplasm)
2013-02-02 Deleted RELATION part of GO:0005737 (cytoplasm)
2012-10-29 Added RELATION part of GO:0005737 (cytoplasm)
2008-04-01 Updated RELATION is a GO:0044444 (obsolete cytoplasmic part)
2008-04-01 Updated RELATION is a GO:0031982 (vesicle)
2008-04-01 Updated RELATION is a GO:0043229 (intracellular organelle)
Timestamp Action Category Detail
2010-02-04 Added XREF NIF_Subcellular:sao180601769
Timestamp Action Category Detail
2024-09-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
2022-04-08 Deleted SUBSET goslim_aspergillus
2017-07-08 Added SUBSET goslim_agr
2016-12-17 Added SUBSET goslim_mouse
2016-10-14 Added SUBSET goslim_chembl
2016-10-14 Added SECONDARY GO:0016023 (cytoplasmic, membrane-bounded vesicle)
2016-10-14 Added SUBSET goslim_generic
2016-10-14 Added SUBSET goslim_aspergillus
2016-10-14 Added SUBSET goslim_candida
2016-10-14 Added SUBSET goslim_yeast
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