Note that it is speculated that higher eukaryotic YTH-family protein may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing.
GO:0033621
JSON
nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts
Biological Process
Definition (GO:0033621 GONUTS page)
The chemical reactions and pathways resulting in the selective degradation of meiosis-specific transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. PMID:16823445
Comments
Note that it is speculated that higher eukaryotic YTH-family protein may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
degradation of meiosis-specific transcripts | exact |
mRNA degradation, meiosis-specific transcripts | exact |
mRNA catabolism, meiosis-specific transcripts | exact |
mRNA breakdown, meiosis-specific transcripts | exact |
nuclear mRNA catabolic process, meiosis-specific transcripts | exact |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0033621
Child Term | Relationship to GO:0033621 |
---|---|
positive regulation of nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts
|
positively_regulates |
negative regulation of nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts
|
negatively_regulates |
regulation of nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts
|
regulates |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0033621 | nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts | Only in Taxon | 2759 | Eukaryota |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A287BGI5 | 9823 | A0A287BGI5_PIG | GO:0006402 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A5F5PJA1 | 9796 | A0A5F5PJA1_HORSE | GO:0006402 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A5F8G5N3 | 13616 | A0A5F8G5N3_MONDO | GO:0006402 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A8I3P920 | 9615 | A0A8I3P920_CANLF | GO:0006402 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A8I6A320 | 10116 | A0A8I6A320_RAT | GO:0006402 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A8V0YQZ5 | 9031 | A0A8V0YQZ5_CHICK | GO:0006402 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | B0BNG7 | 10116 | B0BNG7_RAT | GO:0006402 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | F6T6P8 | 9258 | F6T6P8_ORNAN | GO:0006402 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | F7FHG5 | 10116 | F7FHG5_RAT | GO:0006402 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | G3S7K9 | 9595 | G3S7K9_GORGO | GO:0006402 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0033621 based on ALL annotations
The top 100 of 148 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts
|
401,935.66 | 100.00 | 485 | 485 |
nuclear exosome focus
|
396,429.70 | 87.98 | 432 | 438 |
Mei2 nuclear dot complex
|
360,839.97 | 68.44 | 360 | 401 |
sno(s)RNA 3'-end processing
|
164,075.19 | 23.15 | 169 | 414 |
protein-RNA adaptor activity
|
113,621.38 | 17.96 | 160 | 566 |
nucleolar peripheral inclusion body
|
58,665.75 | 11.99 | 195 | 1,336 |
heterochromatin island
|
92,415.86 | 9.05 | 63 | 274 |
lncRNA binding
|
31,171.31 | 6.71 | 161 | 2,076 |
siRNA catabolic process
|
137,806.50 | 6.50 | 36 | 105 |
co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway
|
28,365.05 | 6.38 | 194 | 2,749 |
Totals | 6187 | 6308934 |
No co-occurrence statistics for GO:0033621 based on MANUAL annotations
The top 100 of 102 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts
|
86,119.94 | 100.00 | 15 | 15 |
nuclear exosome focus
|
76,551.06 | 50.00 | 8 | 9 |
MTREC complex
|
71,766.62 | 31.25 | 5 | 6 |
Mei2 nuclear dot complex
|
33,123.05 | 21.74 | 5 | 13 |
siRNA-independent facultative heterochromatin formation
|
43,059.97 | 21.05 | 4 | 8 |
heterochromatin island
|
28,706.65 | 20.00 | 5 | 15 |
nuclear mRNA surveillance of spliceosomal pre-mRNA splicing
|
31,316.34 | 18.18 | 4 | 11 |
cleavage body
|
17,223.99 | 12.90 | 4 | 20 |
regulation of siRNA-independent facultative heterochromatin formation
|
34,447.98 | 11.11 | 2 | 5 |
regulatory ncRNA 3'-end processing
|
28,706.65 | 10.53 | 2 | 6 |
Totals | 220 | 430591 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:2759 (Eukaryota) |
2024-02-24 | Added | RELATION | is a GO:0071028 (nuclear mRNA surveillance) |
2024-02-24 | Deleted | RELATION | is a GO:0000956 (nuclear-transcribed mRNA catabolic process) |
2009-03-15 | Deleted | DEFINITION | The selective degradation of meiosis-specific transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. |
2009-03-15 | Added | DEFINITION | The chemical reactions and pathways resulting in the selective degradation of meiosis-specific transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. |
2008-05-13 | Added | DEFINITION | The selective degradation of meiosis-specific transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. |
2008-05-12 | Deleted | DEFINITION | The selective degradation of meiosis-specific transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. |
2008-04-30 | Added | RELATION | is a GO:0000956 (nuclear-transcribed mRNA catabolic process) |
2008-04-30 | Updated | TERM | nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts |
2008-04-30 | Deleted | RELATION | is a GO:0006402 (mRNA catabolic process) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-30 | Updated | TERM | nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts |
2007-10-16 | Added | TERM | mRNA catabolic process, meiosis-specific transcripts |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-03-15 | Deleted | DEFINITION | The selective degradation of meiosis-specific transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. |
2009-03-15 | Added | DEFINITION | The chemical reactions and pathways resulting in the selective degradation of meiosis-specific transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. |
2008-05-13 | Added | DEFINITION | The selective degradation of meiosis-specific transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. |
2008-05-12 | Deleted | DEFINITION | The selective degradation of meiosis-specific transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. |
2008-04-30 | Added | SYNONYM | nuclear mRNA catabolic process, meiosis-specific transcripts |
2007-10-25 | Added | DEFINITION | The selective degradation of meiosis-specific transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein. |
2007-10-16 | Added | SYNONYM | mRNA degradation, meiosis-specific transcripts |
2007-10-16 | Added | SYNONYM | mRNA catabolism, meiosis-specific transcripts |
2007-10-16 | Added | SYNONYM | mRNA breakdown, meiosis-specific transcripts |
2007-10-16 | Added | SYNONYM | degradation of meiosis-specific transcripts |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-02-24 | Added | RELATION | is a GO:0071028 (nuclear mRNA surveillance) |
2024-02-24 | Deleted | RELATION | is a GO:0000956 (nuclear-transcribed mRNA catabolic process) |
2008-04-30 | Added | RELATION | is a GO:0000956 (nuclear-transcribed mRNA catabolic process) |
2008-04-30 | Deleted | RELATION | is a GO:0006402 (mRNA catabolic process) |
2008-04-01 | Updated | RELATION | is a GO:0006402 (mRNA catabolic process) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:2759 (Eukaryota) |
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