See also the cellular component term 'nuclear speck ; GO:0016607'.
GO:0035063
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nuclear speck organization
Biological Process
Definition (GO:0035063 GONUTS page)
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized.
Comments
See also the cellular component term 'nuclear speck ; GO:0016607'.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
| Synonym | Type |
|---|---|
| nuclear speckle assembly | narrow |
| nuclear speck organisation | exact |
| nuclear speckle organization | exact |
| nuclear speck organization and biogenesis | related |
Ancestor Chart
Ancestor chart for GO:0035063
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
| Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
|---|---|---|---|---|---|---|---|
| NOT-qualified manual | protein | Q4V7C8 | 10116 | CEP55_RAT | GO:0006997 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
| NOT-qualified manual | protein | Q53EZ4 | 9606 | CEP55_HUMAN | GO:0006997 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:20616062 | |
| NOT-qualified manual | protein | Q8CGS4 | 10116 | CHMP3_RAT | GO:0006997 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
| NOT-qualified manual | protein | Q8WUM4 | 9606 | PDC6I_HUMAN | GO:0006997 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:20616062 | |
| NOT-qualified manual | protein | Q9QZA2 | 10116 | PDC6I_RAT | GO:0006997 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
| NOT-qualified manual | protein | Q9Y3E7 | 9606 | CHMP3_HUMAN | GO:0006997 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:20616062 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0035063 based on ALL annotations
The top 100 of 135 co-occurring terms
| Co-occurring Term | PR | S% | #Together | #Compared |
|---|---|---|---|---|
|
nuclear speck organization
|
683,292.60 | 100.00 | 290 | 290 |
|
organelle disassembly
|
243,164.64 | 21.23 | 100 | 281 |
|
positive regulation of interleukin-18 production
|
281,993.78 | 19.45 | 78 | 189 |
|
regulation of cellular response to stress
|
62,004.78 | 7.74 | 100 | 1,102 |
|
regulation of TORC1 signaling
|
34,702.52 | 4.63 | 100 | 1,969 |
|
regulation of cell cycle G2/M phase transition
|
33,763.69 | 4.37 | 80 | 1,619 |
|
stress granule disassembly
|
29,113.45 | 3.94 | 100 | 2,347 |
|
negative regulation of DNA damage response, signal transduction by p53 class mediator
|
27,459.43 | 3.67 | 86 | 2,140 |
|
positive regulation of NLRP3 inflammasome complex assembly
|
26,104.78 | 3.47 | 80 | 2,094 |
|
sperm DNA decondensation
|
64,461.57 | 2.59 | 10 | 106 |
| Totals | 4363 | 69524570 | ||
No co-occurrence statistics for GO:0035063 based on MANUAL annotations
The top 100 of 101 co-occurring terms
| Co-occurring Term | PR | S% | #Together | #Compared |
|---|---|---|---|---|
|
nuclear speck organization
|
52,279.00 | 100.00 | 27 | 27 |
|
omega speckle
|
16,634.23 | 16.67 | 7 | 22 |
|
R-loop processing
|
8,042.92 | 11.27 | 8 | 52 |
|
organelle disassembly
|
11,006.11 | 9.52 | 4 | 19 |
|
ubiquitin-like protein peptidase activity
|
14,257.91 | 8.57 | 3 | 11 |
|
positive regulation of cell cycle G2/M phase transition
|
6,150.47 | 7.02 | 4 | 34 |
|
positive regulation of viral genome replication
|
3,945.58 | 6.40 | 8 | 106 |
|
regulation of cellular response to stress
|
4,647.02 | 5.88 | 4 | 45 |
|
positive regulation of protein metabolic process
|
3,154.77 | 5.15 | 7 | 116 |
|
regulation of TORC1 signaling
|
2,945.30 | 4.26 | 4 | 71 |
| Totals | 438 | 940388 | ||
Change Log
- All changes
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- Term
- Term
- Definition / Synonyms
- Definition / Synonyms
- Relationships
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- Cross-references
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- Other
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| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2020-02-28 | Deleted | XREF | MIPS_funcat:42.10.09 |
| 2019-05-04 | Added | XREF | MIPS_funcat:42.10.09 |
| 2009-06-16 | Deleted | SYNONYM | nuclear speckle assembly |
| 2009-06-16 | Deleted | DEFINITION | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. |
| 2009-06-16 | Deleted | SYNONYM | nuclear speck organisation and biogenesis |
| 2009-06-16 | Deleted | SYNONYM | nuclear speckle organization and biogenesis |
| 2009-06-16 | Added | SYNONYM | nuclear speckle organization |
| 2009-06-16 | Deleted | SYNONYM | nuclear speck organization and biogenesis |
| 2009-06-16 | Added | SYNONYM | nuclear speck organisation |
| 2009-06-16 | Added | SYNONYM | nuclear speckle assembly |
| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2008-10-21 | Updated | TERM | nuclear speck organization |
| 2003-12-02 | Added | TERM | nuclear speck organization and biogenesis |
| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2009-06-16 | Deleted | SYNONYM | nuclear speckle assembly |
| 2009-06-16 | Deleted | DEFINITION | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. |
| 2009-06-16 | Deleted | SYNONYM | nuclear speck organisation and biogenesis |
| 2009-06-16 | Deleted | SYNONYM | nuclear speckle organization and biogenesis |
| 2009-06-16 | Added | SYNONYM | nuclear speckle organization |
| 2009-06-16 | Deleted | SYNONYM | nuclear speck organization and biogenesis |
| 2009-06-16 | Added | SYNONYM | nuclear speck organisation |
| 2009-06-16 | Added | SYNONYM | nuclear speckle assembly |
| 2009-06-16 | Added | DEFINITION | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. |
| 2009-06-16 | Added | SYNONYM | nuclear speck organization and biogenesis |
| 2008-10-21 | Added | SYNONYM | nuclear speck organization and biogenesis |
| 2008-05-13 | Added | DEFINITION | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. |
| 2008-05-12 | Deleted | DEFINITION | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. |
| 2007-08-09 | Deleted | SYNONYM | nuclear speckle organization and biogenesis |
| 2007-08-09 | Deleted | SYNONYM | nuclear speckle assembly |
| 2007-08-09 | Deleted | SYNONYM | nuclear speck organisation and biogenesis |
| 2007-08-09 | Added | SYNONYM | nuclear speckle assembly |
| 2007-08-09 | Added | SYNONYM | nuclear speckle organization and biogenesis |
| 2007-08-09 | Added | SYNONYM | nuclear speck organisation and biogenesis |
| 2007-04-27 | Updated | DEFINITION | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. |
| 2005-12-21 | Added | SYNONYM | nuclear speckle organization and biogenesis |
| 2005-07-22 | Added | SYNONYM | nuclear speck organisation and biogenesis |
| 2004-07-22 | Updated | DEFINITION | The assembly and arrangement of nuclear specks, a class of nuclear body in which splicing factors are localized. |
| 2004-04-19 | Added | SYNONYM | nuclear speckle assembly |
| 2004-04-16 | Deleted | SYNONYM | nuclear speckle assembly |
| 2004-03-03 | Updated | DEFINITION | The assembly and arrangement of nuclear specks (GO:0016607), a class of nuclear body in which splicing factors are localized. |
| 2003-12-02 | Added | SYNONYM | nuclear speckle assembly |
| 2003-12-02 | Added | DEFINITION | The assembly and organization of nuclear specks (GO:0016607), a class of nuclear body in which splicing factors are localized. |
| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2008-04-01 | Updated | RELATION | is a GO:0030575 (nuclear body organization) |
| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2020-02-28 | Deleted | XREF | MIPS_funcat:42.10.09 |
| 2019-05-04 | Added | XREF | MIPS_funcat:42.10.09 |
| Timestamp | Action | Category | Detail |
|---|
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