See also the cellular component term 'nuclear speck ; GO:0016607'.
GO:0035063
JSON
nuclear speck organization
Biological Process
Definition (GO:0035063 GONUTS page)
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized.
Comments
See also the cellular component term 'nuclear speck ; GO:0016607'.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
nuclear speckle organization | exact |
nuclear speckle assembly | narrow |
nuclear speck organization and biogenesis | related |
nuclear speck organisation | exact |
Ancestor Chart
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | Q4V7C8 | 10116 | CEP55_RAT | GO:0006997 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | Q53EZ4 | 9606 | CEP55_HUMAN | GO:0006997 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:20616062 | |
NOT-qualified manual | protein | Q8CGS4 | 10116 | CHMP3_RAT | GO:0006997 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | Q8WUM4 | 9606 | PDC6I_HUMAN | GO:0006997 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:20616062 | |
NOT-qualified manual | protein | Q9QZA2 | 10116 | PDC6I_RAT | GO:0006997 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | Q9Y3E7 | 9606 | CHMP3_HUMAN | GO:0006997 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:20616062 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0035063 based on ALL annotations
The top 100 of 139 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
nuclear speck organization
|
672,202.70 | 100.00 | 290 | 290 |
organelle disassembly
|
220,394.33 | 20.20 | 100 | 305 |
positive regulation of interleukin-18 production
|
277,417.00 | 19.45 | 78 | 189 |
regulation of cellular response to stress
|
60,832.82 | 7.72 | 100 | 1,105 |
regulation of TORC1 signaling
|
34,087.36 | 4.63 | 100 | 1,972 |
regulation of cell cycle G2/M phase transition
|
34,208.79 | 4.49 | 80 | 1,572 |
stress granule disassembly
|
29,150.16 | 4.01 | 100 | 2,306 |
positive regulation of NLRP3 inflammasome complex assembly
|
29,645.10 | 3.95 | 80 | 1,814 |
negative regulation of DNA damage response, signal transduction by p53 class mediator
|
27,255.74 | 3.70 | 86 | 2,121 |
sperm DNA decondensation
|
63,415.35 | 2.59 | 10 | 106 |
Totals | 4091 | 29547340 |
No co-occurrence statistics for GO:0035063 based on MANUAL annotations
The top 100 of 103 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
nuclear speck organization
|
47,844.41 | 100.00 | 27 | 27 |
omega speckle
|
15,223.22 | 16.67 | 7 | 22 |
R-loop processing
|
7,360.68 | 11.27 | 8 | 52 |
ubiquitin-like protein peptidase activity
|
14,353.32 | 8.82 | 3 | 10 |
positive regulation of cell cycle G2/M phase transition
|
6,834.92 | 7.84 | 4 | 28 |
positive regulation of viral genome replication
|
3,610.90 | 6.40 | 8 | 106 |
organelle disassembly
|
4,450.64 | 6.06 | 4 | 43 |
regulation of cellular response to stress
|
4,252.84 | 5.88 | 4 | 45 |
positive regulation of protein metabolic process
|
2,838.23 | 5.07 | 7 | 118 |
stress granule disassembly
|
2,814.38 | 4.40 | 4 | 68 |
Totals | 438 | 785954 |
Change Log
- All changes
- All changes
- Term
- Term
- Definition / Synonyms
- Definition / Synonyms
- Relationships
- Relationships
- Cross-references
- Cross-references
- Other
- Other
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-02-28 | Deleted | XREF | MIPS_funcat:42.10.09 |
2019-05-04 | Added | XREF | MIPS_funcat:42.10.09 |
2009-06-16 | Deleted | SYNONYM | nuclear speckle organization and biogenesis |
2009-06-16 | Deleted | DEFINITION | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. |
2009-06-16 | Added | DEFINITION | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. |
2009-06-16 | Added | SYNONYM | nuclear speckle assembly |
2009-06-16 | Deleted | SYNONYM | nuclear speck organisation and biogenesis |
2009-06-16 | Added | SYNONYM | nuclear speck organisation |
2009-06-16 | Added | SYNONYM | nuclear speckle organization |
2009-06-16 | Deleted | SYNONYM | nuclear speckle assembly |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-10-21 | Updated | TERM | nuclear speck organization |
2003-12-02 | Added | TERM | nuclear speck organization and biogenesis |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-06-16 | Deleted | SYNONYM | nuclear speckle organization and biogenesis |
2009-06-16 | Deleted | DEFINITION | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. |
2009-06-16 | Added | DEFINITION | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. |
2009-06-16 | Added | SYNONYM | nuclear speckle assembly |
2009-06-16 | Deleted | SYNONYM | nuclear speck organisation and biogenesis |
2009-06-16 | Added | SYNONYM | nuclear speck organisation |
2009-06-16 | Added | SYNONYM | nuclear speckle organization |
2009-06-16 | Deleted | SYNONYM | nuclear speckle assembly |
2009-06-16 | Deleted | SYNONYM | nuclear speck organization and biogenesis |
2009-06-16 | Added | SYNONYM | nuclear speck organization and biogenesis |
2008-10-21 | Added | SYNONYM | nuclear speck organization and biogenesis |
2008-05-13 | Added | DEFINITION | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. |
2008-05-12 | Deleted | DEFINITION | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. |
2007-08-09 | Added | SYNONYM | nuclear speckle organization and biogenesis |
2007-08-09 | Added | SYNONYM | nuclear speck organisation and biogenesis |
2007-08-09 | Deleted | SYNONYM | nuclear speck organisation and biogenesis |
2007-08-09 | Added | SYNONYM | nuclear speckle assembly |
2007-08-09 | Deleted | SYNONYM | nuclear speckle organization and biogenesis |
2007-08-09 | Deleted | SYNONYM | nuclear speckle assembly |
2007-04-27 | Updated | DEFINITION | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized. |
2005-12-21 | Added | SYNONYM | nuclear speckle organization and biogenesis |
2005-07-22 | Added | SYNONYM | nuclear speck organisation and biogenesis |
2004-07-22 | Updated | DEFINITION | The assembly and arrangement of nuclear specks, a class of nuclear body in which splicing factors are localized. |
2004-04-19 | Added | SYNONYM | nuclear speckle assembly |
2004-04-16 | Deleted | SYNONYM | nuclear speckle assembly |
2004-03-03 | Updated | DEFINITION | The assembly and arrangement of nuclear specks (GO:0016607), a class of nuclear body in which splicing factors are localized. |
2003-12-02 | Added | SYNONYM | nuclear speckle assembly |
2003-12-02 | Added | DEFINITION | The assembly and organization of nuclear specks (GO:0016607), a class of nuclear body in which splicing factors are localized. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0030575 (nuclear body organization) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-02-28 | Deleted | XREF | MIPS_funcat:42.10.09 |
2019-05-04 | Added | XREF | MIPS_funcat:42.10.09 |
Timestamp | Action | Category | Detail |
---|
Not found :(
Sorry, but the Term you were trying to view does not exist.
Reported error:
It looks like this may have been caused by:
- a mistyped URL
- an out-of-date link