This term is obsolete.
See also the cellular component term 'nuclear speck ; GO:0016607'.

GO:0035063 JSON

nuclear speck organization

Biological Process

Definition (GO:0035063 GONUTS page)

A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized.

Comments

See also the cellular component term 'nuclear speck ; GO:0016607'.

297 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
nuclear speckle organization exact
nuclear speckle assembly narrow
nuclear speck organization and biogenesis related
nuclear speck organisation exact

Ancestor Chart

Ancestor chart for GO:0035063
Chart options
Ancestor chart

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein Q4V7C8 10116 CEP55_RAT GO:0006997 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein Q53EZ4 9606 CEP55_HUMAN GO:0006997 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:20616062
NOT-qualified manual protein Q8CGS4 10116 CHMP3_RAT GO:0006997 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein Q8WUM4 9606 PDC6I_HUMAN GO:0006997 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:20616062
NOT-qualified manual protein Q9QZA2 10116 PDC6I_RAT GO:0006997 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein Q9Y3E7 9606 CHMP3_HUMAN GO:0006997 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:20616062

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0035063 based on ALL annotations
The top 100 of 139 co-occurring terms
Co-occurring Term PR S% #Together #Compared
nuclear speck organization
672,202.70 100.00 290 290
organelle disassembly
220,394.33 20.20 100 305
positive regulation of interleukin-18 production
277,417.00 19.45 78 189
regulation of cellular response to stress
60,832.82 7.72 100 1,105
regulation of TORC1 signaling
34,087.36 4.63 100 1,972
regulation of cell cycle G2/M phase transition
34,208.79 4.49 80 1,572
stress granule disassembly
29,150.16 4.01 100 2,306
positive regulation of NLRP3 inflammasome complex assembly
29,645.10 3.95 80 1,814
negative regulation of DNA damage response, signal transduction by p53 class mediator
27,255.74 3.70 86 2,121
sperm DNA decondensation
63,415.35 2.59 10 106
Totals 4091 29547340
No co-occurrence statistics for GO:0035063 based on MANUAL annotations
The top 100 of 103 co-occurring terms
Co-occurring Term PR S% #Together #Compared
nuclear speck organization
47,844.41 100.00 27 27
omega speckle
15,223.22 16.67 7 22
R-loop processing
7,360.68 11.27 8 52
ubiquitin-like protein peptidase activity
14,353.32 8.82 3 10
positive regulation of cell cycle G2/M phase transition
6,834.92 7.84 4 28
positive regulation of viral genome replication
3,610.90 6.40 8 106
organelle disassembly
4,450.64 6.06 4 43
regulation of cellular response to stress
4,252.84 5.88 4 45
positive regulation of protein metabolic process
2,838.23 5.07 7 118
stress granule disassembly
2,814.38 4.40 4 68
Totals 438 785954

Change Log

Timestamp Action Category Detail
2020-02-28 Deleted XREF MIPS_funcat:42.10.09
2019-05-04 Added XREF MIPS_funcat:42.10.09
2009-06-16 Deleted SYNONYM nuclear speckle organization and biogenesis
2009-06-16 Deleted DEFINITION A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized.
2009-06-16 Added DEFINITION A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized.
2009-06-16 Added SYNONYM nuclear speckle assembly
2009-06-16 Deleted SYNONYM nuclear speck organisation and biogenesis
2009-06-16 Added SYNONYM nuclear speck organisation
2009-06-16 Added SYNONYM nuclear speckle organization
2009-06-16 Deleted SYNONYM nuclear speckle assembly
Timestamp Action Category Detail
2008-10-21 Updated TERM nuclear speck organization
2003-12-02 Added TERM nuclear speck organization and biogenesis
Timestamp Action Category Detail
2009-06-16 Deleted SYNONYM nuclear speckle organization and biogenesis
2009-06-16 Deleted DEFINITION A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized.
2009-06-16 Added DEFINITION A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized.
2009-06-16 Added SYNONYM nuclear speckle assembly
2009-06-16 Deleted SYNONYM nuclear speck organisation and biogenesis
2009-06-16 Added SYNONYM nuclear speck organisation
2009-06-16 Added SYNONYM nuclear speckle organization
2009-06-16 Deleted SYNONYM nuclear speckle assembly
2009-06-16 Deleted SYNONYM nuclear speck organization and biogenesis
2009-06-16 Added SYNONYM nuclear speck organization and biogenesis
2008-10-21 Added SYNONYM nuclear speck organization and biogenesis
2008-05-13 Added DEFINITION A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized.
2008-05-12 Deleted DEFINITION A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized.
2007-08-09 Added SYNONYM nuclear speckle organization and biogenesis
2007-08-09 Added SYNONYM nuclear speck organisation and biogenesis
2007-08-09 Deleted SYNONYM nuclear speck organisation and biogenesis
2007-08-09 Added SYNONYM nuclear speckle assembly
2007-08-09 Deleted SYNONYM nuclear speckle organization and biogenesis
2007-08-09 Deleted SYNONYM nuclear speckle assembly
2007-04-27 Updated DEFINITION A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of nuclear specks, a class of nuclear body in which splicing factors are localized.
2005-12-21 Added SYNONYM nuclear speckle organization and biogenesis
2005-07-22 Added SYNONYM nuclear speck organisation and biogenesis
2004-07-22 Updated DEFINITION The assembly and arrangement of nuclear specks, a class of nuclear body in which splicing factors are localized.
2004-04-19 Added SYNONYM nuclear speckle assembly
2004-04-16 Deleted SYNONYM nuclear speckle assembly
2004-03-03 Updated DEFINITION The assembly and arrangement of nuclear specks (GO:0016607), a class of nuclear body in which splicing factors are localized.
2003-12-02 Added SYNONYM nuclear speckle assembly
2003-12-02 Added DEFINITION The assembly and organization of nuclear specks (GO:0016607), a class of nuclear body in which splicing factors are localized.
Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0030575 (nuclear body organization)
Timestamp Action Category Detail
2020-02-28 Deleted XREF MIPS_funcat:42.10.09
2019-05-04 Added XREF MIPS_funcat:42.10.09
Timestamp Action Category Detail
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