This term is obsolete.

GO:0036464 JSON

cytoplasmic ribonucleoprotein granule

Cellular Component

Definition (GO:0036464 GONUTS page)

A ribonucleoprotein granule located in the cytoplasm. PMID:15121898

Acknowledgement

This term was created by the GO Consortium with support from: PARK image

226,100 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
Staufen granule narrow

Ancestor Chart

Ancestor chart for GO:0036464
Chart options
Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0036464

Child Term Relationship to
GO:0036464
mutator focus
is_a
P-body
is_a
neuronal ribonucleoprotein granule
is_a
Z granule
is_a
cytoplasmic stress granule
is_a
Yb body
is_a
RNP body
is_a
P granule
is_a
TIS granule
is_a
chromatoid body
is_a

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0036464 cytoplasmic ribonucleoprotein granule Only in Taxon 131567 cellular organisms

More information on taxon constraints in GO is available here

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A0A096MJ18 10116 A0A096MJ18_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A096MK97 10116 A0A096MK97_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0D1E8X3 237631 A0A0D1E8X3_USTMA GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A0G2JZ79 10116 SIR1_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1L8G9S0 8355 A0A1L8G9S0_XENLA GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A1S4L3K3 6945 A0A1S4L3K3_IXOSC GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A1W2Q633 10116 A0A1W2Q633_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A2K5ATM2 6239 A0A2K5ATM2_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A2K5ATM9 6239 A0A2K5ATM9_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A2K5ATP6 6239 A0A2K5ATP6_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033

Cross-references

Database ID Description
UniProtKB-SubCell SL-0495 Cytoplasmic ribonucleoprotein granule

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0036464 based on ALL annotations
The top 100 of 1,757 co-occurring terms
Co-occurring Term PR S% #Together #Compared
cytoplasmic ribonucleoprotein granule
9,986.62 100.00 19,520 19,520
regulation of translation at presynapse, modulating synaptic transmission
5,744.86 14.62 3,199 5,561
positive regulation of long-term neuronal synaptic plasticity
5,514.79 14.47 3,199 5,793
translation regulator activity
1,340.88 7.98 3,209 23,900
regulation of mRNA stability
902.49 6.33 3,400 37,623
oogenesis
1,216.10 5.22 1,632 13,402
cytoplasmic stress granule
635.57 5.01 3,715 58,373
3'-UTR-mediated mRNA destabilization
2,047.16 4.51 1,068 5,210
mRNA 3'-UTR binding
525.52 4.25 3,537 67,215
animal organ development
490.40 3.93 3,199 65,145
Totals 114163 3588605
No co-occurrence statistics for GO:0036464 based on MANUAL annotations
The top 100 of 1,386 co-occurring terms
Co-occurring Term PR S% #Together #Compared
cytoplasmic ribonucleoprotein granule
2,641.72 100.00 489 489
RISC complex
1,090.86 22.90 166 402
regulatory ncRNA-mediated post-transcriptional gene silencing
947.70 20.65 160 446
RNA endonuclease activity
262.29 9.16 265 2,669
miRNA binding
418.58 6.18 45 284
single-stranded RNA binding
183.59 6.13 167 2,403
3'-UTR-mediated mRNA destabilization
722.34 6.01 35 128
RISC complex assembly
941.30 5.69 31 87
RNA secondary structure unwinding
1,517.58 5.30 27 47
miRNA-mediated gene silencing by mRNA destabilization
409.28 4.93 33 213
Totals 2464 27212

Change Log

Timestamp Action Category Detail
2024-09-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
2019-09-12 Deleted RELATION is a GO:0044444 (obsolete cytoplasmic part)
2015-04-24 Added RELATION part of GO:0005737 (cytoplasm)
2014-06-20 Added DEFINITION A ribonucleoprotein granule located in the cytoplasm.
2014-06-20 Added SYNONYM Staufen granule
2014-06-20 Added RELATION is a GO:0035770 (ribonucleoprotein granule)
2014-06-20 Added RELATION is a GO:0044444 (obsolete cytoplasmic part)
2014-06-20 Added TERM cytoplasmic ribonucleoprotein granule
Timestamp Action Category Detail
2014-06-20 Added TERM cytoplasmic ribonucleoprotein granule
Timestamp Action Category Detail
2014-06-20 Added DEFINITION A ribonucleoprotein granule located in the cytoplasm.
2014-06-20 Added SYNONYM Staufen granule
Timestamp Action Category Detail
2019-09-12 Deleted RELATION is a GO:0044444 (obsolete cytoplasmic part)
2015-04-24 Added RELATION part of GO:0005737 (cytoplasm)
2014-06-20 Added RELATION is a GO:0035770 (ribonucleoprotein granule)
2014-06-20 Added RELATION is a GO:0044444 (obsolete cytoplasmic part)
Timestamp Action Category Detail
Timestamp Action Category Detail
2024-09-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
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