GO:0042742
JSON
defense response to bacterium
Biological Process
Definition (GO:0042742 GONUTS page)
Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
Secondary IDs
GO:0009816, GO:0042830
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
defense response to bacterium, incompatible interaction | narrow |
antibacterial peptide activity | related |
defence response to bacteria | exact |
defence response to bacterium | exact |
defense response to bacteria | exact |
resistance response to pathogenic bacterium | narrow |
resistance response to pathogenic bacteria | narrow |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0042742
Child Term | Relationship to GO:0042742 |
---|---|
defense response to Gram-negative bacterium
|
is_a |
positive regulation of defense response to bacterium
|
positively_regulates |
neutrophil-mediated killing of bacterium
|
part_of |
antibacterial innate immune response
|
is_a |
antibacterial humoral response
|
is_a |
negative regulation of defense response to bacterium
|
negatively_regulates |
male-specific defense response to bacterium
|
is_a |
peptidoglycan recognition protein signaling pathway
|
part_of |
calprotectin complex
|
capable_of_part_of |
regulation of defense response to bacterium
|
regulates |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0042742 | defense response to bacterium | Never in Taxon | 4895 | Schizosaccharomyces |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | D4ABW7 | 10116 | LYZL4_RAT | GO:0042742 | 2 NOT-qualified manual annotations exist with these evidence codes: ECO:0000250, ECO:0000266 from these references: GO_REF:0000024, GO_REF:0000096 | |
NOT-qualified manual | protein | P0C5B6 | 3702 | 4CLL4_ARATH | GO:0009617 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:18267944 | |
NOT-qualified manual | protein | Q2T9N7 | 9913 | LYZL4_BOVIN | GO:0042742 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024 | |
NOT-qualified manual | protein | Q39066 | 3702 | ECS1_ARATH | GO:0042742 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:9869403 | |
NOT-qualified manual | protein | Q84P23 | 3702 | 4CLL9_ARATH | GO:0009617 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:18267944 | |
NOT-qualified manual | protein | Q84P24 | 3702 | 4CLL6_ARATH | GO:0009617 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:18267944 | |
NOT-qualified manual | protein | Q96KX0 | 9606 | LYZL4_HUMAN | GO:0042742 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024 | |
NOT-qualified manual | protein | Q9D925 | 10090 | LYZL4_MOUSE | GO:0042742 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:21444326 | |
NOT-qualified manual | protein | Q9FLV0 | 3702 | DMR6_ARATH | GO:0009617 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:15986928 | |
NOT-qualified manual | protein | Q9M0X9 | 3702 | 4CLL7_ARATH | GO:0009617 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:18267944 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR001153 | Barwin domain |
InterPro | IPR002633 | Bacteriocin, class IIa |
InterPro | IPR005521 | Attacin, C-terminal |
InterPro | IPR005575 | Statherin |
InterPro | IPR006079 | Lantibiotic, Type A, Bacillales-type |
InterPro | IPR007464 | Bacteriocin, class IId |
InterPro | IPR007682 | Lantibiotic, type A, Lactobacillales-type |
InterPro | IPR007962 | Bombinin |
InterPro | IPR009382 | Coleoptericin |
InterPro | IPR009456 | Moricin family |
Replaces
This term can be used instead of these obsolete terms:
GO Identifier | GO Term Name | Reason |
---|---|---|
GO:0003797 | obsolete antibacterial peptide activity | consider GO:0042742 |
GO:0051635 | obsolete bacterial cell surface binding | consider GO:0042742 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0042742 based on ALL annotations
The top 100 of 3,939 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
defense response to bacterium
|
2,128.97 | 100.00 | 91,565 | 91,565 |
killing of cells of another organism
|
1,392.85 | 39.74 | 46,065 | 70,410 |
lysozyme activity
|
1,010.87 | 23.38 | 28,869 | 60,800 |
cell wall macromolecule catabolic process
|
608.98 | 14.36 | 20,493 | 71,643 |
defense response to Gram-negative bacterium
|
1,075.34 | 9.43 | 9,509 | 18,826 |
peptidoglycan catabolic process
|
243.00 | 8.94 | 26,783 | 234,655 |
defense response to Gram-positive bacterium
|
874.52 | 8.30 | 8,632 | 21,014 |
defense response to fungus
|
532.17 | 5.36 | 5,850 | 23,403 |
innate immune response
|
164.07 | 5.16 | 12,336 | 160,070 |
symbiont-mediated cytolysis of host cell
|
1,080.37 | 4.34 | 4,148 | 8,174 |
Totals | 438981 | 10367105 |
No co-occurrence statistics for GO:0042742 based on MANUAL annotations
The top 100 of 2,924 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
defense response to bacterium
|
440.59 | 100.00 | 2,932 | 2,932 |
defense response to oomycetes
|
409.60 | 33.83 | 1,018 | 1,095 |
transmembrane receptor protein serine/threonine kinase activity
|
420.79 | 30.72 | 914 | 957 |
plant-type hypersensitive response
|
194.10 | 7.75 | 252 | 572 |
defense response to fungus
|
76.60 | 6.41 | 270 | 1,553 |
regulation of jasmonic acid mediated signaling pathway
|
75.21 | 3.90 | 141 | 826 |
CCR6 chemokine receptor binding
|
315.89 | 3.83 | 114 | 159 |
chemoattractant activity
|
147.31 | 3.49 | 110 | 329 |
pyroptotic inflammatory response
|
201.41 | 3.15 | 96 | 210 |
cell chemotaxis
|
52.26 | 3.06 | 116 | 978 |
Totals | 12486 | 353919 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4895 (Schizosaccharomyces) |
2020-11-24 | Added | SECONDARY | GO:0009816 (defense response to bacterium, incompatible interaction) |
2020-11-24 | Added | SYNONYM | resistance response to pathogenic bacterium |
2020-11-24 | Added | SYNONYM | resistance response to pathogenic bacteria |
2020-11-24 | Added | SYNONYM | defense response to bacterium, incompatible interaction |
2013-11-14 | Deleted | RELATION | is a GO:0006952 (defense response) |
2013-11-14 | Added | RELATION | is a GO:0098542 (defense response to other organism) |
2008-05-13 | Added | DEFINITION | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. |
2008-05-12 | Deleted | DEFINITION | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. |
2008-04-01 | Updated | RELATION | is a GO:0006952 (defense response) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2006-09-21 | Updated | TERM | defense response to bacterium |
2003-05-24 | Added | TERM | defense response to bacteria |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-11-24 | Added | SYNONYM | resistance response to pathogenic bacterium |
2020-11-24 | Added | SYNONYM | resistance response to pathogenic bacteria |
2020-11-24 | Added | SYNONYM | defense response to bacterium, incompatible interaction |
2008-05-13 | Added | DEFINITION | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. |
2008-05-12 | Deleted | DEFINITION | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. |
2007-08-09 | Added | SYNONYM | defence response to bacterium |
2007-08-09 | Added | SYNONYM | defence response to bacteria |
2007-08-09 | Added | SYNONYM | antibacterial peptide activity |
2007-08-09 | Deleted | SYNONYM | defense response to bacteria |
2007-08-09 | Deleted | SYNONYM | defence response to bacterium |
2007-08-09 | Deleted | SYNONYM | defence response to bacteria |
2007-08-09 | Deleted | SYNONYM | antibacterial peptide activity |
2007-08-09 | Added | SYNONYM | defense response to bacteria |
2006-09-21 | Added | SYNONYM | defense response to bacteria |
2006-09-21 | Added | SYNONYM | defence response to bacterium |
2006-09-19 | Updated | DEFINITION | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. |
2005-08-10 | Added | SYNONYM | antibacterial peptide activity |
2004-05-29 | Added | SYNONYM | defence response to bacteria |
2003-05-24 | Added | DEFINITION | Reactions triggered in response to the presence of bacteria that act to protect the cell or organism. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2013-11-14 | Deleted | RELATION | is a GO:0006952 (defense response) |
2013-11-14 | Added | RELATION | is a GO:0098542 (defense response to other organism) |
2008-04-01 | Updated | RELATION | is a GO:0006952 (defense response) |
2008-04-01 | Updated | RELATION | is a GO:0009617 (response to bacterium) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4895 (Schizosaccharomyces) |
2020-11-24 | Added | SECONDARY | GO:0009816 (defense response to bacterium, incompatible interaction) |
2006-09-21 | Added | SECONDARY | GO:0042830 (defense response to pathogenic bacteria) |
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