This term is obsolete.

GO:0042789 JSON

mRNA transcription by RNA polymerase II

Biological Process

Definition (GO:0042789 GONUTS page)

The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter.

3,680 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
mRNA transcription from RNA polymerase II promoter exact
mRNA transcription from Pol II promoter exact

Ancestor Chart

Ancestor chart for GO:0042789
Chart options
Ancestor chart

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Annotating to transcription processes Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein Q96327 3702 EBP1_ARATH GO:0006351 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:15689342

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0042789 based on ALL annotations
The top 100 of 1,407 co-occurring terms
Co-occurring Term PR S% #Together #Compared
mRNA transcription by RNA polymerase II
54,635.31 100.00 3,568 3,568
transcription factor TFTC complex
27,762.02 15.61 656 1,291
positive regulation of transcription initiation by RNA polymerase II
5,543.82 8.63 1,305 12,861
aryl hydrocarbon receptor binding
19,680.46 6.63 268 744
nuclear vitamin D receptor binding
8,947.25 6.27 329 2,009
retinoic acid-responsive element binding
32,319.48 5.66 210 355
positive regulation of thyroid hormone receptor signaling pathway
54,635.31 5.44 194 194
sterol response element binding
35,148.72 5.25 193 300
cellular response to interleukin-17
18,593.17 4.94 195 573
positive regulation of vitamin D receptor signaling pathway
23,114.94 4.89 187 442
Totals 21920 199890
No co-occurrence statistics for GO:0042789 based on MANUAL annotations
The top 100 of 1,263 co-occurring terms
Co-occurring Term PR S% #Together #Compared
mRNA transcription by RNA polymerase II
4,646.76 100.00 278 278
positive regulation of transcription initiation by RNA polymerase II
1,006.97 15.36 96 443
transcription factor TFTC complex
1,685.09 9.82 33 91
retinoic acid-responsive element binding
1,480.84 8.53 29 91
thyroid hormone receptor signaling pathway
2,016.52 7.47 23 53
regulation of RNA biosynthetic process
2,522.53 6.46 19 35
positive regulation of keratinocyte differentiation
1,267.30 6.29 21 77
peroxisome proliferator activated receptor signaling pathway
1,408.11 6.17 20 66
androgen biosynthetic process
1,765.77 6.15 19 50
nuclear vitamin D receptor binding
1,576.58 6.03 19 56
Totals 2006 24132

Change Log

Timestamp Action Category Detail
2018-01-20 Updated TERM mRNA transcription by RNA polymerase II
2018-01-20 Added SYNONYM mRNA transcription from RNA polymerase II promoter
2011-05-12 Added DEFINITION The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter.
2011-05-12 Deleted DEFINITION The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter.
2010-02-10 Deleted DEFINITION The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter.
2010-02-10 Added DEFINITION The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter.
2008-05-13 Added DEFINITION The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter.
2008-05-12 Deleted DEFINITION The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter.
2008-04-01 Updated RELATION is a GO:0009299 (mRNA transcription)
2008-04-01 Updated RELATION is a GO:0006366 (transcription by RNA polymerase II)
Timestamp Action Category Detail
2018-01-20 Updated TERM mRNA transcription by RNA polymerase II
2005-03-27 Updated TERM mRNA transcription from RNA polymerase II promoter
2003-07-15 Added TERM mRNA transcription from Pol II promoter
Timestamp Action Category Detail
2018-01-20 Added SYNONYM mRNA transcription from RNA polymerase II promoter
2011-05-12 Added DEFINITION The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter.
2011-05-12 Deleted DEFINITION The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter.
2010-02-10 Deleted DEFINITION The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter.
2010-02-10 Added DEFINITION The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter.
2008-05-13 Added DEFINITION The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter.
2008-05-12 Deleted DEFINITION The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter.
2007-08-09 Deleted SYNONYM mRNA transcription from Pol II promoter
2007-08-09 Added SYNONYM mRNA transcription from Pol II promoter
2005-03-27 Added SYNONYM mRNA transcription from Pol II promoter
2003-07-15 Added DEFINITION The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter.
Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0009299 (mRNA transcription)
2008-04-01 Updated RELATION is a GO:0006366 (transcription by RNA polymerase II)
Timestamp Action Category Detail
Timestamp Action Category Detail
Please Wait...

Not found :(

Sorry, but the Term you were trying to view does not exist.

Reported error:

It looks like this may have been caused by:

  • a mistyped URL
  • an out-of-date link
This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our Privacy Notice and Terms of Use.