GO:0042789
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mRNA transcription by RNA polymerase II
Biological Process
Definition (GO:0042789 GONUTS page)
The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
mRNA transcription from RNA polymerase II promoter | exact |
mRNA transcription from Pol II promoter | exact |
Ancestor Chart
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Annotating to transcription processes | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | Q96327 | 3702 | EBP1_ARATH | GO:0006351 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:15689342 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0042789 based on ALL annotations
The top 100 of 1,407 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
mRNA transcription by RNA polymerase II
|
54,635.31 | 100.00 | 3,568 | 3,568 |
transcription factor TFTC complex
|
27,762.02 | 15.61 | 656 | 1,291 |
positive regulation of transcription initiation by RNA polymerase II
|
5,543.82 | 8.63 | 1,305 | 12,861 |
aryl hydrocarbon receptor binding
|
19,680.46 | 6.63 | 268 | 744 |
nuclear vitamin D receptor binding
|
8,947.25 | 6.27 | 329 | 2,009 |
retinoic acid-responsive element binding
|
32,319.48 | 5.66 | 210 | 355 |
positive regulation of thyroid hormone receptor signaling pathway
|
54,635.31 | 5.44 | 194 | 194 |
sterol response element binding
|
35,148.72 | 5.25 | 193 | 300 |
cellular response to interleukin-17
|
18,593.17 | 4.94 | 195 | 573 |
positive regulation of vitamin D receptor signaling pathway
|
23,114.94 | 4.89 | 187 | 442 |
Totals | 21920 | 199890 |
No co-occurrence statistics for GO:0042789 based on MANUAL annotations
The top 100 of 1,263 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
mRNA transcription by RNA polymerase II
|
4,646.76 | 100.00 | 278 | 278 |
positive regulation of transcription initiation by RNA polymerase II
|
1,006.97 | 15.36 | 96 | 443 |
transcription factor TFTC complex
|
1,685.09 | 9.82 | 33 | 91 |
retinoic acid-responsive element binding
|
1,480.84 | 8.53 | 29 | 91 |
thyroid hormone receptor signaling pathway
|
2,016.52 | 7.47 | 23 | 53 |
regulation of RNA biosynthetic process
|
2,522.53 | 6.46 | 19 | 35 |
positive regulation of keratinocyte differentiation
|
1,267.30 | 6.29 | 21 | 77 |
peroxisome proliferator activated receptor signaling pathway
|
1,408.11 | 6.17 | 20 | 66 |
androgen biosynthetic process
|
1,765.77 | 6.15 | 19 | 50 |
nuclear vitamin D receptor binding
|
1,576.58 | 6.03 | 19 | 56 |
Totals | 2006 | 24132 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2018-01-20 | Updated | TERM | mRNA transcription by RNA polymerase II |
2018-01-20 | Added | SYNONYM | mRNA transcription from RNA polymerase II promoter |
2011-05-12 | Added | DEFINITION | The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. |
2011-05-12 | Deleted | DEFINITION | The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter. |
2010-02-10 | Deleted | DEFINITION | The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter. |
2010-02-10 | Added | DEFINITION | The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter. |
2008-05-13 | Added | DEFINITION | The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter. |
2008-05-12 | Deleted | DEFINITION | The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter. |
2008-04-01 | Updated | RELATION | is a GO:0009299 (mRNA transcription) |
2008-04-01 | Updated | RELATION | is a GO:0006366 (transcription by RNA polymerase II) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2018-01-20 | Updated | TERM | mRNA transcription by RNA polymerase II |
2005-03-27 | Updated | TERM | mRNA transcription from RNA polymerase II promoter |
2003-07-15 | Added | TERM | mRNA transcription from Pol II promoter |
Timestamp | Action | Category | Detail |
---|---|---|---|
2018-01-20 | Added | SYNONYM | mRNA transcription from RNA polymerase II promoter |
2011-05-12 | Added | DEFINITION | The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. |
2011-05-12 | Deleted | DEFINITION | The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter. |
2010-02-10 | Deleted | DEFINITION | The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter. |
2010-02-10 | Added | DEFINITION | The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter. |
2008-05-13 | Added | DEFINITION | The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter. |
2008-05-12 | Deleted | DEFINITION | The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter. |
2007-08-09 | Deleted | SYNONYM | mRNA transcription from Pol II promoter |
2007-08-09 | Added | SYNONYM | mRNA transcription from Pol II promoter |
2005-03-27 | Added | SYNONYM | mRNA transcription from Pol II promoter |
2003-07-15 | Added | DEFINITION | The synthesis of messenger RNA (mRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II-specific promoter. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0009299 (mRNA transcription) |
2008-04-01 | Updated | RELATION | is a GO:0006366 (transcription by RNA polymerase II) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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