This term is obsolete.

GO:0042791 JSON

5S class rRNA transcription by RNA polymerase III

Biological Process

Definition (GO:0042791 GONUTS page)

The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template by RNA polymerase III (Pol III), originating at a type 1 RNA polymerase III promoter. PMID:12381659

5,136 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
5S class rRNA transcription from RNA polymerase III type 1 promoter related
5S rRNA transcription exact

Ancestor Chart

Ancestor chart for GO:0042791
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Ancestor chart

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Annotating to transcription processes Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein Q96327 3702 EBP1_ARATH GO:0006351 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:15689342

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0042791 based on ALL annotations
The top 100 of 163 co-occurring terms
Co-occurring Term PR S% #Together #Compared
5S class rRNA transcription by RNA polymerase III
38,626.68 100.00 5,130 5,130
transcription initiation at RNA polymerase III promoter
8,051.87 20.78 5,055 24,250
transcription factor TFIIIC complex
7,814.70 20.21 5,107 25,243
RNA polymerase III type 1 promoter sequence-specific DNA binding
856.20 1.08 105 4,737
RNA polymerase III type 2 promoter sequence-specific DNA binding
694.28 0.87 85 4,729
RNA polymerase III general transcription initiation factor activity
560.55 0.84 99 6,822
DNA binding, bending
613.26 0.73 69 4,346
RNA polymerase II sequence-specific DNA-binding transcription factor recruiting activity
6,280.76 0.38 20 123
protein localization to chromatin
335.52 0.23 16 1,842
chromatin insulator sequence binding
242.94 0.07 4 636
Totals 25661 59570809
No co-occurrence statistics for GO:0042791 based on MANUAL annotations
The top 51 of 51 co-occurring terms
Co-occurring Term PR S% #Together #Compared
5S class rRNA transcription by RNA polymerase III
12,602.97 100.00 112 112
transcription initiation at RNA polymerase III promoter
3,375.80 26.32 105 392
transcription factor TFIIIC complex
2,304.91 18.20 109 596
RNA polymerase III type 1 promoter sequence-specific DNA binding
916.58 3.74 8 110
RNA polymerase III type 2 promoter sequence-specific DNA binding
794.78 3.24 7 111
RNA polymerase III general transcription initiation factor activity
537.34 3.06 11 258
transcription by RNA polymerase III
226.92 1.58 13 722
tRNA transcription by RNA polymerase III
147.62 1.02 8 683
tRNA transcription
4,200.99 0.88 1 3
positive regulation of transcription elongation by RNA polymerase I
1,260.30 0.83 1 10
Totals 454 964877

Change Log

Timestamp Action Category Detail
2018-02-03 Added SYNONYM 5S class rRNA transcription from RNA polymerase III type 1 promoter
2018-02-03 Updated TERM 5S class rRNA transcription by RNA polymerase III
2010-09-03 Deleted DEFINITION The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template.
2010-09-03 Added DEFINITION The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template by RNA polymerase III (Pol III), originating at a type 1 RNA polymerase III promoter.
2010-09-03 Updated TERM 5S class rRNA transcription from RNA polymerase III type 1 promoter
2008-05-13 Added DEFINITION The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template.
2008-05-12 Deleted DEFINITION The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template.
2008-04-01 Updated RELATION is a GO:0009303 (rRNA transcription)
2008-04-01 Updated RELATION is a GO:0006383 (transcription by RNA polymerase III)
2007-08-09 Deleted SYNONYM 5S rRNA transcription
Timestamp Action Category Detail
2018-02-03 Updated TERM 5S class rRNA transcription by RNA polymerase III
2010-09-03 Updated TERM 5S class rRNA transcription from RNA polymerase III type 1 promoter
2003-07-23 Updated TERM 5S class rRNA transcription
2003-07-15 Added TERM 5s rRNA class transcription
Timestamp Action Category Detail
2018-02-03 Added SYNONYM 5S class rRNA transcription from RNA polymerase III type 1 promoter
2010-09-03 Deleted DEFINITION The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template.
2010-09-03 Added DEFINITION The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template by RNA polymerase III (Pol III), originating at a type 1 RNA polymerase III promoter.
2008-05-13 Added DEFINITION The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template.
2008-05-12 Deleted DEFINITION The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template.
2007-08-09 Deleted SYNONYM 5S rRNA transcription
2007-08-09 Added SYNONYM 5S rRNA transcription
2004-04-19 Added SYNONYM 5S rRNA transcription
2004-04-16 Deleted SYNONYM 5S rRNA transcription
2003-07-15 Added SYNONYM 5S rRNA transcription
2003-07-15 Added DEFINITION The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template.
Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0009303 (rRNA transcription)
2008-04-01 Updated RELATION is a GO:0006383 (transcription by RNA polymerase III)
Timestamp Action Category Detail
Timestamp Action Category Detail
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