GO:0042791
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5S class rRNA transcription by RNA polymerase III
Biological Process
Definition (GO:0042791 GONUTS page)
The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template by RNA polymerase III (Pol III), originating at a type 1 RNA polymerase III promoter. PMID:12381659
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
5S rRNA transcription | exact |
5S class rRNA transcription from RNA polymerase III type 1 promoter | related |
Ancestor Chart
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Annotating to transcription processes | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | Q96327 | 3702 | EBP1_ARATH | GO:0006351 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:15689342 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0042791 based on ALL annotations
The top 100 of 167 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
5S class rRNA transcription by RNA polymerase III
|
39,389.53 | 100.00 | 4,949 | 4,949 |
transcription initiation at RNA polymerase III promoter
|
8,173.03 | 20.68 | 4,874 | 23,490 |
transcription factor TFIIIC complex
|
7,972.10 | 20.22 | 4,926 | 24,339 |
RNA polymerase III type 1 promoter sequence-specific DNA binding
|
900.09 | 1.11 | 105 | 4,595 |
RNA polymerase III type 2 promoter sequence-specific DNA binding
|
729.91 | 0.90 | 85 | 4,587 |
RNA polymerase III general transcription initiation factor activity
|
584.34 | 0.86 | 98 | 6,606 |
DNA binding, bending
|
628.56 | 0.75 | 69 | 4,324 |
RNA polymerase II sequence-specific DNA-binding transcription factor recruiting activity
|
6,404.80 | 0.40 | 20 | 123 |
protein localization to chromatin
|
331.00 | 0.23 | 16 | 1,904 |
chromatin insulator sequence binding
|
292.32 | 0.07 | 4 | 539 |
Totals | 24530 | 46919899 |
No co-occurrence statistics for GO:0042791 based on MANUAL annotations
The top 54 of 54 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
5S class rRNA transcription by RNA polymerase III
|
12,421.15 | 100.00 | 104 | 104 |
transcription initiation at RNA polymerase III promoter
|
3,328.32 | 26.29 | 97 | 362 |
transcription factor TFIIIC complex
|
2,293.48 | 18.36 | 101 | 547 |
RNA polymerase III type 1 promoter sequence-specific DNA binding
|
974.21 | 4.04 | 8 | 102 |
RNA polymerase III type 2 promoter sequence-specific DNA binding
|
844.16 | 3.50 | 7 | 103 |
RNA polymerase III general transcription initiation factor activity
|
546.53 | 3.21 | 11 | 250 |
transcription by RNA polymerase III
|
237.81 | 1.69 | 13 | 679 |
tRNA transcription by RNA polymerase III
|
135.38 | 0.96 | 8 | 734 |
tRNA transcription
|
4,140.38 | 0.94 | 1 | 3 |
positive regulation of transcription elongation by RNA polymerase I
|
1,242.11 | 0.88 | 1 | 10 |
Totals | 433 | 911645 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2018-02-03 | Added | SYNONYM | 5S class rRNA transcription from RNA polymerase III type 1 promoter |
2018-02-03 | Updated | TERM | 5S class rRNA transcription by RNA polymerase III |
2010-09-03 | Updated | TERM | 5S class rRNA transcription from RNA polymerase III type 1 promoter |
2010-09-03 | Added | DEFINITION | The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template by RNA polymerase III (Pol III), originating at a type 1 RNA polymerase III promoter. |
2010-09-03 | Deleted | DEFINITION | The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template. |
2008-05-13 | Added | DEFINITION | The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template. |
2008-05-12 | Deleted | DEFINITION | The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template. |
2008-04-01 | Updated | RELATION | is a GO:0006383 (transcription by RNA polymerase III) |
2008-04-01 | Updated | RELATION | is a GO:0009303 (rRNA transcription) |
2007-08-09 | Added | SYNONYM | 5S rRNA transcription |
Timestamp | Action | Category | Detail |
---|---|---|---|
2018-02-03 | Updated | TERM | 5S class rRNA transcription by RNA polymerase III |
2010-09-03 | Updated | TERM | 5S class rRNA transcription from RNA polymerase III type 1 promoter |
2003-07-23 | Updated | TERM | 5S class rRNA transcription |
2003-07-15 | Added | TERM | 5s rRNA class transcription |
Timestamp | Action | Category | Detail |
---|---|---|---|
2018-02-03 | Added | SYNONYM | 5S class rRNA transcription from RNA polymerase III type 1 promoter |
2010-09-03 | Added | DEFINITION | The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template by RNA polymerase III (Pol III), originating at a type 1 RNA polymerase III promoter. |
2010-09-03 | Deleted | DEFINITION | The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template. |
2008-05-13 | Added | DEFINITION | The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template. |
2008-05-12 | Deleted | DEFINITION | The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template. |
2007-08-09 | Added | SYNONYM | 5S rRNA transcription |
2007-08-09 | Deleted | SYNONYM | 5S rRNA transcription |
2004-04-19 | Added | SYNONYM | 5S rRNA transcription |
2004-04-16 | Deleted | SYNONYM | 5S rRNA transcription |
2003-07-15 | Added | DEFINITION | The synthesis of 5S ribosomal RNA (rRNA), or an equivalent rRNA, from a DNA template. |
2003-07-15 | Added | SYNONYM | 5S rRNA transcription |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0006383 (transcription by RNA polymerase III) |
2008-04-01 | Updated | RELATION | is a GO:0009303 (rRNA transcription) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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