GO:0042816
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vitamin B6 metabolic process
Biological Process
Definition (GO:0042816 GONUTS page)
The chemical reactions and pathways involving any of the vitamin B6 compounds: pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. PMID:30037155 PMID:30671974
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
vitamin B6 metabolism | exact |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0042816
Child Term | Relationship to GO:0042816 |
---|---|
pyridoxamine metabolic process
|
is_a |
vitamin B6 biosynthetic process
|
is_a |
pyridoxal metabolic process
|
is_a |
pyridoxine metabolic process
|
is_a |
pyridoxal phosphate metabolic process
|
is_a |
vitamin B6 catabolic process
|
is_a |
Cross-references
Database | ID | Description |
---|---|---|
Reactome | R-HSA-964975 |
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
has_primary_input_or_output | CHEBI | CHEBI:27306 | vitamin B6 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0042816 based on ALL annotations
The top 100 of 331 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
vitamin B6 metabolic process
|
3,954.56 | 100.00 | 50,108 | 50,108 |
pyridoxamine phosphate oxidase activity
|
3,878.83 | 64.90 | 32,935 | 33,578 |
pyridoxal 5'-phosphate salvage
|
3,788.45 | 33.55 | 17,060 | 17,808 |
pyridoxal kinase activity
|
3,600.85 | 32.91 | 17,042 | 18,716 |
pyridoxal phosphate biosynthetic process
|
1,499.95 | 31.67 | 32,948 | 86,866 |
pyridoxine biosynthetic process
|
1,071.85 | 23.75 | 32,936 | 121,516 |
FMN binding
|
169.17 | 4.18 | 32,936 | 769,929 |
hydroxymethylpyrimidine kinase activity
|
150.75 | 1.79 | 1,630 | 42,759 |
NAD(P)HX epimerase activity
|
39.57 | 0.50 | 491 | 49,071 |
phosphomethylpyrimidine kinase activity
|
29.45 | 0.34 | 311 | 41,764 |
Totals | 304694 | 109611137 |
No co-occurrence statistics for GO:0042816 based on MANUAL annotations
The top 22 of 22 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
vitamin B6 metabolic process
|
23,924.29 | 100.00 | 59 | 59 |
pyridoxal phosphate binding
|
564.35 | 2.36 | 56 | 2,374 |
pyridoxamine phosphate oxidase activity
|
637.98 | 1.52 | 2 | 75 |
coenzyme F420 binding
|
629.59 | 1.04 | 1 | 38 |
response to sucrose
|
312.74 | 0.95 | 2 | 153 |
asexual reproduction
|
498.42 | 0.94 | 1 | 48 |
oxidoreductase activity, acting on the CH-CH group of donors
|
469.10 | 0.92 | 1 | 51 |
pyridoxal kinase activity
|
186.91 | 0.54 | 1 | 128 |
pyridoxal 5'-phosphate salvage
|
182.63 | 0.53 | 1 | 131 |
pyridoxal phosphate biosynthetic process
|
144.56 | 0.52 | 2 | 331 |
Totals | 208 | 686971 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-12-05 | Added | XREF | Reactome:R-HSA-964975 |
2020-06-02 | Deleted | RELATION | is a GO:0017144 (drug metabolic process) |
2017-11-29 | Added | RELATION | is a GO:0017144 (drug metabolic process) |
2017-08-13 | Deleted | RELATION | is a GO:0044763 (single-organism cellular process) |
2013-11-28 | Added | RELATION | is a GO:0044763 (single-organism cellular process) |
2012-11-02 | Added | RELATION | is a GO:0072524 (pyridine-containing compound metabolic process) |
2012-11-02 | Deleted | RELATION | is a GO:0046483 (obsolete heterocycle metabolic process) |
2009-07-03 | Added | RELATION | is a GO:0046483 (obsolete heterocycle metabolic process) |
2009-02-01 | Added | DEFINITION | The chemical reactions and pathways involving any of the vitamin B6 compounds: pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. |
2009-02-01 | Deleted | DEFINITION | The chemical reactions and pathways involving any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2007-01-15 | Updated | TERM | vitamin B6 metabolic process |
2003-08-08 | Added | TERM | vitamin B6 metabolism |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-02-01 | Added | DEFINITION | The chemical reactions and pathways involving any of the vitamin B6 compounds: pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. |
2009-02-01 | Deleted | DEFINITION | The chemical reactions and pathways involving any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. |
2008-05-13 | Added | DEFINITION | The chemical reactions and pathways involving any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. |
2008-05-12 | Deleted | DEFINITION | The chemical reactions and pathways involving any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. |
2007-08-09 | Deleted | SYNONYM | vitamin B6 metabolism |
2007-08-09 | Added | SYNONYM | vitamin B6 metabolism |
2007-01-29 | Added | SYNONYM | vitamin B6 metabolism |
2006-05-04 | Updated | DEFINITION | The chemical reactions and pathways involving any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. |
2005-01-21 | Updated | DEFINITION | The chemical reactions involving any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. |
2003-08-08 | Added | DEFINITION | The chemical reactions and physical changes involving any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-06-02 | Deleted | RELATION | is a GO:0017144 (drug metabolic process) |
2017-11-29 | Added | RELATION | is a GO:0017144 (drug metabolic process) |
2017-08-13 | Deleted | RELATION | is a GO:0044763 (single-organism cellular process) |
2013-11-28 | Added | RELATION | is a GO:0044763 (single-organism cellular process) |
2012-11-02 | Added | RELATION | is a GO:0072524 (pyridine-containing compound metabolic process) |
2012-11-02 | Deleted | RELATION | is a GO:0046483 (obsolete heterocycle metabolic process) |
2009-07-03 | Added | RELATION | is a GO:0046483 (obsolete heterocycle metabolic process) |
2008-04-01 | Updated | RELATION | is a GO:0006767 (water-soluble vitamin metabolic process) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-12-05 | Added | XREF | Reactome:R-HSA-964975 |
Timestamp | Action | Category | Detail |
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