GO:0045436
JSON
lycopene beta cyclase activity
Molecular Function
Definition (GO:0045436 GONUTS page)
Catalysis of the cyclization of beta rings at one or both ends of the lycopene molecule (psi, psi-carotene) to form gamma-carotene or the bicyclic beta-carotene (beta, beta-carotene), respectively. PMID:8837512
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
lycopene cyclase | broad |
crtL | related |
Ancestor Chart
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Annotating to catalytic activities using the IPI evidence code | Link |
Describing enzyme functions that catalyse multi-stage reactions | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | P02521 | 9031 | ARLY1_CHICK | GO:0003824 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000304 from this reference: PMID:11258884 | |
NOT-qualified manual | protein | Q7KGG1 | 7227 | Q7KGG1_DROME | GO:0003824 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000320 from this reference: PMID:11904370 | |
NOT-qualified manual | protein | Q7SIE0 | 9103 | ARLY1_MELGA | GO:0003824 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000304 from this reference: PMID:11258884 | |
NOT-qualified manual | protein | Q8MZ84 | 7227 | Q8MZ84_DROME | GO:0003824 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000320 from this reference: PMID:11904370 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR008461 | Lycopene cyclase |
MetaCyc | RXN1F-150 | |
RHEA | 32219 |
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
has_participant | CHEBI | CHEBI:15948 | lycopene |
has_participant | CHEBI | CHEBI:27740 | gamma-carotene |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0045436 based on ALL annotations
The top 95 of 95 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
lycopene beta cyclase activity
|
20,045.12 | 100.00 | 9,725 | 9,725 |
intramolecular lyase activity
|
7,169.44 | 33.72 | 8,315 | 23,248 |
carotenoid biosynthetic process
|
3,173.80 | 15.83 | 9,724 | 61,415 |
geranylgeranyl-diphosphate geranylgeranyltransferase activity
|
1,458.39 | 3.50 | 615 | 8,453 |
carotene biosynthetic process
|
2,567.86 | 2.72 | 325 | 2,537 |
farnesyltranstransferase activity
|
517.76 | 1.97 | 752 | 29,114 |
squalene synthase [NAD(P)H] activity
|
379.79 | 1.49 | 632 | 33,357 |
intramolecular oxidoreductase activity
|
1,147.27 | 1.06 | 125 | 2,184 |
xanthophyll biosynthetic process
|
169.87 | 0.34 | 54 | 6,372 |
isomerase activity
|
55.75 | 0.28 | 8,853 | 3,183,067 |
Totals | 51260 | 263338271 |
No co-occurrence statistics for GO:0045436 based on MANUAL annotations
The top 18 of 18 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
lycopene beta cyclase activity
|
20,504.75 | 100.00 | 63 | 63 |
carotene biosynthetic process
|
8,394.56 | 40.40 | 61 | 149 |
xanthophyll biosynthetic process
|
5,921.16 | 27.55 | 54 | 187 |
15-cis-phytoene synthase activity
|
4,731.86 | 7.23 | 6 | 26 |
ubiquinone biosynthetic process
|
793.16 | 3.84 | 54 | 1,396 |
neoxanthin synthase activity
|
20,504.75 | 3.17 | 2 | 2 |
geranylgeranyl-diphosphate geranylgeranyltransferase activity
|
621.36 | 2.24 | 5 | 165 |
beta-zeacarotene biosynthetic process
|
20,504.75 | 1.59 | 1 | 1 |
beta-carotene biosynthetic process
|
10,252.37 | 1.56 | 1 | 2 |
chromoplast
|
427.18 | 0.91 | 1 | 48 |
Totals | 364 | 129194 |
Change Log
- All changes
- All changes
- Term
- Term
- Definition / Synonyms
- Definition / Synonyms
- Relationships
- Relationships
- Cross-references
- Cross-references
- Other
- Other
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-06-22 | Added | XREF | RHEA:32219 |
2008-05-13 | Added | DEFINITION | Catalysis of the cyclization of beta rings at one or both ends of the lycopene molecule (psi, psi-carotene) to form gamma-carotene or the bicyclic beta-carotene (beta, beta-carotene), respectively. |
2008-05-12 | Deleted | DEFINITION | Catalysis of the cyclization of beta rings at one or both ends of the lycopene molecule (psi, psi-carotene) to form gamma-carotene or the bicyclic beta-carotene (beta, beta-carotene), respectively. |
2008-04-01 | Updated | RELATION | is a GO:0009975 (cyclase activity) |
2008-04-01 | Updated | RELATION | is a GO:0016860 (intramolecular oxidoreductase activity) |
2007-08-09 | Added | SYNONYM | crtL |
2007-08-09 | Added | SYNONYM | lycopene cyclase |
2007-08-09 | Deleted | SYNONYM | lycopene cyclase |
2007-08-09 | Deleted | SYNONYM | crtL |
2007-07-16 | Added | XREF | MetaCyc:RXN1F-150 |
Timestamp | Action | Category | Detail |
---|---|---|---|
2003-03-19 | Updated | TERM | lycopene beta cyclase activity |
2002-07-30 | Added | TERM | lycopene beta cyclase |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-05-13 | Added | DEFINITION | Catalysis of the cyclization of beta rings at one or both ends of the lycopene molecule (psi, psi-carotene) to form gamma-carotene or the bicyclic beta-carotene (beta, beta-carotene), respectively. |
2008-05-12 | Deleted | DEFINITION | Catalysis of the cyclization of beta rings at one or both ends of the lycopene molecule (psi, psi-carotene) to form gamma-carotene or the bicyclic beta-carotene (beta, beta-carotene), respectively. |
2007-08-09 | Added | SYNONYM | crtL |
2007-08-09 | Added | SYNONYM | lycopene cyclase |
2007-08-09 | Deleted | SYNONYM | lycopene cyclase |
2007-08-09 | Deleted | SYNONYM | crtL |
2007-07-16 | Added | SYNONYM | crtL |
2007-07-16 | Added | SYNONYM | lycopene cyclase |
2002-11-27 | Added | DEFINITION | Catalysis of the cyclization of beta rings at one or both ends of the lycopene molecule (psi, psi-carotene) to form gamma-carotene or the bicyclic beta-carotene (beta, beta-carotene), respectively. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0009975 (cyclase activity) |
2008-04-01 | Updated | RELATION | is a GO:0016860 (intramolecular oxidoreductase activity) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2020-06-22 | Added | XREF | RHEA:32219 |
2007-07-16 | Added | XREF | MetaCyc:RXN1F-150 |
Timestamp | Action | Category | Detail |
---|
Not found :(
Sorry, but the Term you were trying to view does not exist.
Reported error:
It looks like this may have been caused by:
- a mistyped URL
- an out-of-date link