GO:0046914
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transition metal ion binding
Molecular Function
Definition (GO:0046914 GONUTS page)
Binding to a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0046914
Child Term | Relationship to GO:0046914 |
---|---|
molybdenum ion binding
|
is_a |
zinc ion binding
|
is_a |
mercury ion binding
|
is_a |
nickel cation binding
|
is_a |
vanadium ion binding
|
is_a |
cobalt ion binding
|
is_a |
cadmium ion binding
|
is_a |
manganese ion binding
|
is_a |
copper ion binding
|
is_a |
iron ion binding
|
is_a |
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Binding term considerations | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | P9WGE9 | 83332 | SODC_MYCTU | GO:0046872 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:15155722 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR001367 | Iron dependent repressor, metal binding and dimerisation domain |
InterPro | IPR003168 | Nitrile hydratase, beta subunit |
InterPro | IPR004232 | Nitrile hydratase alpha/Thiocyanate hydrolase gamma |
InterPro | IPR007167 | Ferrous iron transporter FeoA-like domain |
InterPro | IPR011178 | Amyloidogenic glycoprotein, copper-binding |
InterPro | IPR017416 | Chaperonin Cpn20 |
InterPro | IPR017550 | Formylmethanofuran dehydrogenase subunit C |
InterPro | IPR018141 | Nitrile hydratase, alpha subunit |
InterPro | IPR022689 | Iron dependent repressor |
InterPro | IPR034325 | S-100 |
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
has_primary_input | CHEBI | CHEBI:33515 | transition element cation |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0046914 based on ALL annotations
The top 100 of 680 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
transition metal ion binding
|
1,633.45 | 100.00 | 119,342 | 119,342 |
plasma membrane copper ion transport
|
1,009.24 | 17.67 | 23,677 | 38,321 |
copper ion export
|
975.68 | 17.50 | 23,678 | 39,641 |
nitrile hydratase activity
|
1,211.73 | 5.72 | 6,965 | 9,389 |
protein dimerization activity
|
67.88 | 3.78 | 34,833 | 838,193 |
axonogenesis
|
225.68 | 3.69 | 5,711 | 41,335 |
central nervous system development
|
194.01 | 3.53 | 5,699 | 47,982 |
heparin binding
|
134.13 | 3.28 | 6,185 | 75,322 |
calcium-dependent protein binding
|
329.05 | 3.15 | 4,298 | 21,336 |
cell envelope
|
55.69 | 3.00 | 23,632 | 693,121 |
Totals | 550417 | 96022921 |
No co-occurrence statistics for GO:0046914 based on MANUAL annotations
The top 100 of 155 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
transition metal ion binding
|
33,994.71 | 100.00 | 38 | 38 |
cell envelope
|
14,230.34 | 28.57 | 18 | 43 |
plasma membrane copper ion transport
|
12,487.85 | 26.09 | 18 | 49 |
copper ion export
|
8,175.94 | 19.39 | 19 | 79 |
PTW/PP1 phosphatase complex
|
2,428.19 | 5.17 | 6 | 84 |
silver ion transmembrane transport
|
6,798.94 | 4.35 | 2 | 10 |
regulation of translational initiation in response to stress
|
6,798.94 | 4.35 | 2 | 10 |
copper ion transmembrane transport
|
3,399.47 | 3.57 | 2 | 20 |
response to silver ion
|
2,518.13 | 3.17 | 2 | 27 |
cadherin binding involved in cell-cell adhesion
|
2,060.29 | 2.90 | 2 | 33 |
Totals | 278 | 36453 |
Change Log
- All changes
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- Term
- Definition / Synonyms
- Definition / Synonyms
- Relationships
- Relationships
- Cross-references
- Cross-references
- Other
- Other
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Added | DEFINITION | Binding to a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
2009-07-03 | Deleted | DEFINITION | Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
2009-07-03 | Added | DEFINITION | Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
2009-06-25 | Deleted | RELATION | is a GO:0043169 (cation binding) |
2008-05-13 | Added | DEFINITION | Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
2008-05-12 | Deleted | DEFINITION | Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
2008-04-01 | Updated | RELATION | is a GO:0046872 (metal ion binding) |
2008-04-01 | Updated | RELATION | is a GO:0043169 (cation binding) |
2003-06-10 | Updated | TERM | transition metal ion binding |
Timestamp | Action | Category | Detail |
---|---|---|---|
2003-06-10 | Updated | TERM | transition metal ion binding |
2003-04-15 | Added | TERM | transition metal ion binding activity |
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Added | DEFINITION | Binding to a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
2009-07-03 | Deleted | DEFINITION | Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
2009-07-03 | Added | DEFINITION | Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
2008-05-13 | Added | DEFINITION | Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
2008-05-12 | Deleted | DEFINITION | Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
2003-04-15 | Added | DEFINITION | Interacting selectively with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-06-25 | Deleted | RELATION | is a GO:0043169 (cation binding) |
2008-04-01 | Updated | RELATION | is a GO:0046872 (metal ion binding) |
2008-04-01 | Updated | RELATION | is a GO:0043169 (cation binding) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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