This term is obsolete.

GO:0048027 JSON

mRNA 5'-UTR binding

Molecular Function

Definition (GO:0048027 GONUTS page)

Binding to an mRNA molecule at its 5' untranslated region.

22,398 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
mRNA 5' UTR binding exact

Ancestor Chart

Ancestor chart for GO:0048027
Chart options
Ancestor chart

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Binding term considerations Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein B1WC40 10116 NCBP2_RAT GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein P16568 7227 BICD_DROME GO:0003729 1 NOT-qualified manual annotation exists with evidence code ECO:0000303 from this reference: PMID:12446149
NOT-qualified manual protein P52298 9606 NCBP2_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:7478990
NOT-qualified manual protein P52299 8355 NCBP2_XENLA GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024
NOT-qualified manual protein Q15287 9606 RNPS1_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:22388736
NOT-qualified manual protein Q23500 6239 ACOHC_CAEEL GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:12438312
NOT-qualified manual protein Q52KI8 10090 SRRM1_MOUSE GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: PMID:9531537
NOT-qualified manual protein Q6AYK1 10116 RNPS1_RAT GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein Q6QN14 9606 U17L6_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:17109758
NOT-qualified manual protein Q9CQ49 10090 NCBP2_MOUSE GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024

Cross-references

Database ID Description
InterPro IPR009967 Flagellum biosynthesis repressor FlbT

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0048027 based on ALL annotations
The top 100 of 795 co-occurring terms
Co-occurring Term PR S% #Together #Compared
mRNA 5'-UTR binding
8,716.63 100.00 22,364 22,364
negative regulation of translational initiation
6,171.78 57.42 16,826 23,764
regulation of carbohydrate metabolic process
4,082.10 40.44 16,722 35,707
regulation of bacterial-type flagellum assembly
4,766.30 29.56 8,756 16,013
positive regulation of translational initiation
3,748.59 22.63 7,230 16,812
negative regulation of bacterial-type flagellum assembly
7,433.58 15.16 3,482 4,083
mRNA catabolic process
807.85 9.19 20,381 219,909
bacterial-type flagellum organization
483.86 5.30 12,064 217,331
regulation of translation
395.03 4.47 17,209 379,733
mRNA 3'-UTR binding
157.56 1.37 1,215 67,215
Totals 158387 7511249
No co-occurrence statistics for GO:0048027 based on MANUAL annotations
The top 100 of 676 co-occurring terms
Co-occurring Term PR S% #Together #Compared
mRNA 5'-UTR binding
10,013.95 100.00 129 129
CRD-mediated mRNA stability complex
5,563.30 16.78 25 45
CRD-mediated mRNA stabilization
2,896.60 16.28 35 121
RNA secondary structure unwinding
2,343.69 6.67 11 47
RNA strand annealing activity
1,587.58 6.57 13 82
RNA stem-loop binding
1,045.41 6.51 19 182
N6-methyladenosine-containing RNA reader activity
767.20 5.31 19 248
dendritic filopodium
6,372.51 5.26 7 11
negative regulation of long-term synaptic depression
5,841.47 5.22 7 12
growth cone filopodium
5,392.12 5.19 7 13
Totals 897 10924

Change Log

Timestamp Action Category Detail
2021-05-24 Added DEFINITION Binding to an mRNA molecule at its 5' untranslated region.
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule.
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule.
2009-07-03 Deleted DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
2008-05-13 Added DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
2008-05-12 Deleted DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
2008-04-01 Updated RELATION is a GO:0003729 (mRNA binding)
2007-08-09 Deleted SYNONYM mRNA 5' UTR binding
2007-08-09 Added SYNONYM mRNA 5' UTR binding
2004-04-19 Added SYNONYM mRNA 5' UTR binding
Timestamp Action Category Detail
2004-02-26 Updated TERM mRNA 5'-UTR binding
2003-06-10 Updated TERM mRNA 5' UTR binding
2003-04-02 Added TERM mRNA 5' UTR binding activity
Timestamp Action Category Detail
2021-05-24 Added DEFINITION Binding to an mRNA molecule at its 5' untranslated region.
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule.
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule.
2009-07-03 Deleted DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
2008-05-13 Added DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
2008-05-12 Deleted DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
2007-08-09 Deleted SYNONYM mRNA 5' UTR binding
2007-08-09 Added SYNONYM mRNA 5' UTR binding
2004-04-19 Added SYNONYM mRNA 5' UTR binding
2004-04-16 Deleted SYNONYM mRNA 5' UTR binding
2004-02-26 Added SYNONYM mRNA 5' UTR binding
2003-04-02 Added DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0003729 (mRNA binding)
Timestamp Action Category Detail
Timestamp Action Category Detail
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