GO:0048027
JSON
mRNA 5'-UTR binding
Molecular Function
Definition (GO:0048027 GONUTS page)
Binding to an mRNA molecule at its 5' untranslated region.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
mRNA 5' UTR binding | exact |
Ancestor Chart
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Binding term considerations | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | B1WC40 | 10116 | NCBP2_RAT | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | P16568 | 7227 | BICD_DROME | GO:0003729 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000303 from this reference: PMID:12446149 | |
NOT-qualified manual | protein | P52298 | 9606 | NCBP2_HUMAN | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:7478990 | |
NOT-qualified manual | protein | P52299 | 8355 | NCBP2_XENLA | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024 | |
NOT-qualified manual | protein | Q15287 | 9606 | RNPS1_HUMAN | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:22388736 | |
NOT-qualified manual | protein | Q23500 | 6239 | ACOHC_CAEEL | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:12438312 | |
NOT-qualified manual | protein | Q52KI8 | 10090 | SRRM1_MOUSE | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: PMID:9531537 | |
NOT-qualified manual | protein | Q6AYK1 | 10116 | RNPS1_RAT | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | Q6QN14 | 9606 | U17L6_HUMAN | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:17109758 | |
NOT-qualified manual | protein | Q9CQ49 | 10090 | NCBP2_MOUSE | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR009967 | Flagellum biosynthesis repressor FlbT |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0048027 based on ALL annotations
The top 100 of 795 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
mRNA 5'-UTR binding
|
8,716.63 | 100.00 | 22,364 | 22,364 |
negative regulation of translational initiation
|
6,171.78 | 57.42 | 16,826 | 23,764 |
regulation of carbohydrate metabolic process
|
4,082.10 | 40.44 | 16,722 | 35,707 |
regulation of bacterial-type flagellum assembly
|
4,766.30 | 29.56 | 8,756 | 16,013 |
positive regulation of translational initiation
|
3,748.59 | 22.63 | 7,230 | 16,812 |
negative regulation of bacterial-type flagellum assembly
|
7,433.58 | 15.16 | 3,482 | 4,083 |
mRNA catabolic process
|
807.85 | 9.19 | 20,381 | 219,909 |
bacterial-type flagellum organization
|
483.86 | 5.30 | 12,064 | 217,331 |
regulation of translation
|
395.03 | 4.47 | 17,209 | 379,733 |
mRNA 3'-UTR binding
|
157.56 | 1.37 | 1,215 | 67,215 |
Totals | 158387 | 7511249 |
No co-occurrence statistics for GO:0048027 based on MANUAL annotations
The top 100 of 676 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
mRNA 5'-UTR binding
|
10,013.95 | 100.00 | 129 | 129 |
CRD-mediated mRNA stability complex
|
5,563.30 | 16.78 | 25 | 45 |
CRD-mediated mRNA stabilization
|
2,896.60 | 16.28 | 35 | 121 |
RNA secondary structure unwinding
|
2,343.69 | 6.67 | 11 | 47 |
RNA strand annealing activity
|
1,587.58 | 6.57 | 13 | 82 |
RNA stem-loop binding
|
1,045.41 | 6.51 | 19 | 182 |
N6-methyladenosine-containing RNA reader activity
|
767.20 | 5.31 | 19 | 248 |
dendritic filopodium
|
6,372.51 | 5.26 | 7 | 11 |
negative regulation of long-term synaptic depression
|
5,841.47 | 5.22 | 7 | 12 |
growth cone filopodium
|
5,392.12 | 5.19 | 7 | 13 |
Totals | 897 | 10924 |
Change Log
- All changes
- All changes
- Term
- Term
- Definition / Synonyms
- Definition / Synonyms
- Relationships
- Relationships
- Cross-references
- Cross-references
- Other
- Other
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Added | DEFINITION | Binding to an mRNA molecule at its 5' untranslated region. |
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule. |
2009-07-03 | Added | DEFINITION | Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule. |
2009-07-03 | Deleted | DEFINITION | Interacting selectively with the 5' untranslated region of an mRNA molecule. |
2008-05-13 | Added | DEFINITION | Interacting selectively with the 5' untranslated region of an mRNA molecule. |
2008-05-12 | Deleted | DEFINITION | Interacting selectively with the 5' untranslated region of an mRNA molecule. |
2008-04-01 | Updated | RELATION | is a GO:0003729 (mRNA binding) |
2007-08-09 | Deleted | SYNONYM | mRNA 5' UTR binding |
2007-08-09 | Added | SYNONYM | mRNA 5' UTR binding |
2004-04-19 | Added | SYNONYM | mRNA 5' UTR binding |
Timestamp | Action | Category | Detail |
---|---|---|---|
2004-02-26 | Updated | TERM | mRNA 5'-UTR binding |
2003-06-10 | Updated | TERM | mRNA 5' UTR binding |
2003-04-02 | Added | TERM | mRNA 5' UTR binding activity |
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Added | DEFINITION | Binding to an mRNA molecule at its 5' untranslated region. |
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule. |
2009-07-03 | Added | DEFINITION | Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule. |
2009-07-03 | Deleted | DEFINITION | Interacting selectively with the 5' untranslated region of an mRNA molecule. |
2008-05-13 | Added | DEFINITION | Interacting selectively with the 5' untranslated region of an mRNA molecule. |
2008-05-12 | Deleted | DEFINITION | Interacting selectively with the 5' untranslated region of an mRNA molecule. |
2007-08-09 | Deleted | SYNONYM | mRNA 5' UTR binding |
2007-08-09 | Added | SYNONYM | mRNA 5' UTR binding |
2004-04-19 | Added | SYNONYM | mRNA 5' UTR binding |
2004-04-16 | Deleted | SYNONYM | mRNA 5' UTR binding |
2004-02-26 | Added | SYNONYM | mRNA 5' UTR binding |
2003-04-02 | Added | DEFINITION | Interacting selectively with the 5' untranslated region of an mRNA molecule. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2008-04-01 | Updated | RELATION | is a GO:0003729 (mRNA binding) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|
Not found :(
Sorry, but the Term you were trying to view does not exist.
Reported error:
It looks like this may have been caused by:
- a mistyped URL
- an out-of-date link