This term is obsolete.

GO:0048027 JSON

mRNA 5'-UTR binding

Molecular Function

Definition (GO:0048027 GONUTS page)

Binding to an mRNA molecule at its 5' untranslated region.

22,591 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
mRNA 5' UTR binding exact

Ancestor Chart

Ancestor chart for GO:0048027
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Ancestor chart

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Binding term considerations Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein B1WC40 10116 NCBP2_RAT GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein P16568 7227 BICD_DROME GO:0003729 1 NOT-qualified manual annotation exists with evidence code ECO:0000303 from this reference: PMID:12446149
NOT-qualified manual protein P52298 9606 NCBP2_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:7478990
NOT-qualified manual protein P52299 8355 NCBP2_XENLA GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024
NOT-qualified manual protein Q15287 9606 RNPS1_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:22388736
NOT-qualified manual protein Q23500 6239 ACOHC_CAEEL GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:12438312
NOT-qualified manual protein Q52KI8 10090 SRRM1_MOUSE GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: PMID:9531537
NOT-qualified manual protein Q6AYK1 10116 RNPS1_RAT GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein Q6QN14 9606 U17L6_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:17109758
NOT-qualified manual protein Q9CQ49 10090 NCBP2_MOUSE GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024

Cross-references

Database ID Description
InterPro IPR009967 Flagellum biosynthesis repressor FlbT

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0048027 based on ALL annotations
The top 100 of 771 co-occurring terms
Co-occurring Term PR S% #Together #Compared
mRNA 5'-UTR binding
8,784.63 100.00 22,557 22,557
negative regulation of translational initiation
6,207.62 57.38 16,992 24,046
regulation of carbohydrate metabolic process
4,119.59 40.52 16,888 36,012
regulation of bacterial-type flagellum assembly
4,771.48 29.35 8,790 16,183
positive regulation of translational initiation
3,749.20 22.69 7,360 17,245
negative regulation of bacterial-type flagellum assembly
7,457.88 15.11 3,502 4,125
mRNA catabolic process
826.09 9.32 20,567 218,708
bacterial-type flagellum organization
466.48 5.08 12,117 228,185
regulation of translation
398.94 4.48 17,405 383,261
CRD-mediated mRNA stabilization
2,846.37 1.35 313 966
Totals 159637 7713908
No co-occurrence statistics for GO:0048027 based on MANUAL annotations
The top 100 of 674 co-occurring terms
Co-occurring Term PR S% #Together #Compared
mRNA 5'-UTR binding
10,378.92 100.00 136 136
CRD-mediated mRNA stability complex
6,308.76 19.87 31 51
CRD-mediated mRNA stabilization
3,128.94 17.75 41 136
RNA stem-loop binding
904.58 5.67 19 218
dendritic filopodium
6,604.77 5.00 7 11
negative regulation of long-term synaptic depression
5,588.65 4.93 7 13
growth cone filopodium
5,588.65 4.93 7 13
N6-methyladenosine-containing RNA reader activity
719.71 4.86 19 274
positive regulation of toll-like receptor 8 signaling pathway
4,540.78 4.83 7 16
mRNA regulatory element binding translation repressor activity
772.38 4.78 16 215
Totals 914 11917

Change Log

Timestamp Action Category Detail
2021-05-24 Added DEFINITION Binding to an mRNA molecule at its 5' untranslated region.
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule.
2009-07-03 Deleted DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule.
2008-05-13 Added DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
2008-05-12 Deleted DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
2008-04-01 Updated RELATION is a GO:0003729 (mRNA binding)
2007-08-09 Deleted SYNONYM mRNA 5' UTR binding
2007-08-09 Added SYNONYM mRNA 5' UTR binding
2004-04-19 Added SYNONYM mRNA 5' UTR binding
Timestamp Action Category Detail
2004-02-26 Updated TERM mRNA 5'-UTR binding
2003-06-10 Updated TERM mRNA 5' UTR binding
2003-04-02 Added TERM mRNA 5' UTR binding activity
Timestamp Action Category Detail
2021-05-24 Added DEFINITION Binding to an mRNA molecule at its 5' untranslated region.
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule.
2009-07-03 Deleted DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with the 5' untranslated region of an mRNA molecule.
2008-05-13 Added DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
2008-05-12 Deleted DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
2007-08-09 Deleted SYNONYM mRNA 5' UTR binding
2007-08-09 Added SYNONYM mRNA 5' UTR binding
2004-04-19 Added SYNONYM mRNA 5' UTR binding
2004-04-16 Deleted SYNONYM mRNA 5' UTR binding
2004-02-26 Added SYNONYM mRNA 5' UTR binding
2003-04-02 Added DEFINITION Interacting selectively with the 5' untranslated region of an mRNA molecule.
Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0003729 (mRNA binding)
Timestamp Action Category Detail
Timestamp Action Category Detail
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