This term is obsolete.

GO:0048874 JSON

host-mediated regulation of intestinal microbiota composition

Biological Process

Definition (GO:0048874 GONUTS page)

The biological process involved in maintaining the steady-state number of cells within a population of free-living cells such as the bacteria in the gut. PMID:25757720

737 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
host-induced regulation of intestinal microbiota composition related
homeostasis of number of cells in a free-living population related

Ancestor Chart

Ancestor chart for GO:0048874
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Ancestor chart

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0048874 host-mediated regulation of intestinal microbiota composition Never in Taxon 2 Bacteria
GO:0048874 host-mediated regulation of intestinal microbiota composition Never in Taxon 2157 Archaea
GO:0048874 host-mediated regulation of intestinal microbiota composition Never in Taxon 4895 Schizosaccharomyces
GO:0048874 host-mediated regulation of intestinal microbiota composition Never in Taxon 4932 Saccharomyces cerevisiae

More information on taxon constraints in GO is available here

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein Q63035 10116 NLRP6_RAT GO:0048874 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein Q91WS2 10090 NLRP6_MOUSE GO:0048874 2 NOT-qualified manual annotations exist with evidence code ECO:0000315 from these references: PMID:28801232, PMID:29281815

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0048874 based on ALL annotations
The top 100 of 360 co-occurring terms
Co-occurring Term PR S% #Together #Compared
host-mediated regulation of intestinal microbiota composition
281,469.97 100.00 704 704
response to peptidoglycan
78,021.50 14.16 158 570
interferon-mediated signaling pathway
281,469.97 12.93 91 91
maintenance of protein complex location
239,381.02 12.64 91 107
anatomical structure homeostasis
182,955.48 12.08 91 140
multiple spine synapse organization, single dendrite
281,469.97 11.65 82 82
negative regulation of microglial cell mediated cytotoxicity
281,469.97 11.65 82 82
response to type III interferon
144,710.55 11.52 91 177
inclusion body assembly
132,713.81 11.29 91 193
regulation of interleukin-2 production
157,986.38 11.27 87 155
Totals 9262 104760
No co-occurrence statistics for GO:0048874 based on MANUAL annotations
The top 100 of 335 co-occurring terms
Co-occurring Term PR S% #Together #Compared
host-mediated regulation of intestinal microbiota composition
31,367.40 100.00 45 45
muramyl dipeptide binding
28,230.66 19.57 9 10
detection of muramyl dipeptide
31,367.40 13.33 6 6
negative regulation of microglial cell mediated cytotoxicity
31,367.40 11.11 5 5
nucleotide-binding oligomerization domain containing 2 signaling pathway
6,273.48 11.11 9 45
interferon-mediated signaling pathway
31,367.40 11.11 5 5
regulation of appetite
6,137.10 10.98 9 46
temperature homeostasis
4,527.25 10.94 14 97
nucleotide transport
26,139.50 10.87 5 6
extrinsic component of plasma membrane
6,006.52 10.84 9 47
Totals 520 4784

Change Log

Timestamp Action Category Detail
2024-09-05 Added CONSTRAINT never_in_taxon NCBITaxon:4895 (Schizosaccharomyces)
2024-09-05 Added CONSTRAINT never_in_taxon NCBITaxon:4932 (Saccharomyces cerevisiae)
2024-09-05 Added CONSTRAINT never_in_taxon NCBITaxon:2157 (Archaea)
2024-09-05 Added CONSTRAINT never_in_taxon NCBITaxon:2 (Bacteria)
2018-05-31 Updated TERM host-mediated regulation of intestinal microbiota composition
2018-05-31 Added SYNONYM host-induced regulation of intestinal microbiota composition
2018-05-31 Added SYNONYM homeostasis of number of cells in a free-living population
2018-05-31 Added RELATION is a GO:0051851 (host-mediated perturbation of symbiont process)
2018-05-31 Deleted RELATION is a GO:0044764 (obsolete multi-organism cellular process)
2012-12-15 Deleted RELATION is a GO:0051704 (obsolete multi-organism process)
Timestamp Action Category Detail
2018-05-31 Updated TERM host-mediated regulation of intestinal microbiota composition
2007-01-15 Added TERM homeostasis of number of cells in a free-living population
Timestamp Action Category Detail
2018-05-31 Added SYNONYM host-induced regulation of intestinal microbiota composition
2018-05-31 Added SYNONYM homeostasis of number of cells in a free-living population
2010-12-01 Added DEFINITION The biological process involved in maintaining the steady-state number of cells within a population of free-living cells such as the bacteria in the gut.
2010-12-01 Deleted DEFINITION The biological process involved in maintaining the steady-state of cell number within a population of free-living cells such as the bacteria in the gut.
2010-03-13 Deleted DEFINITION The biological process involved in maintaining the equilibrium of cell number within a population of free-living cells such as the bacteria in the gut.
2010-03-13 Added DEFINITION The biological process involved in maintaining the steady-state of cell number within a population of free-living cells such as the bacteria in the gut.
2008-05-13 Added DEFINITION The biological process involved in maintaining the equilibrium of cell number within a population of free-living cells such as the bacteria in the gut.
2008-05-12 Deleted DEFINITION The biological process involved in maintaining the equilibrium of cell number within a population of free-living cells such as the bacteria in the gut.
2007-04-20 Updated DEFINITION The biological process involved in maintaining the equilibrium of cell number within a population of free-living cells such as the bacteria in the gut.
2007-01-15 Added DEFINITION The biological process involved in maintaining the equilibrium of cell number within a population of free-living cells suc as the bacteria in the gut.
Timestamp Action Category Detail
2018-05-31 Added RELATION is a GO:0051851 (host-mediated perturbation of symbiont process)
2018-05-31 Deleted RELATION is a GO:0044764 (obsolete multi-organism cellular process)
2012-12-15 Deleted RELATION is a GO:0051704 (obsolete multi-organism process)
2012-12-15 Added RELATION is a GO:0044764 (obsolete multi-organism cellular process)
2008-08-11 Added RELATION is a GO:0051704 (obsolete multi-organism process)
2008-04-01 Updated RELATION is a GO:0048872 (homeostasis of number of cells)
Timestamp Action Category Detail
Timestamp Action Category Detail
2024-09-05 Added CONSTRAINT never_in_taxon NCBITaxon:4895 (Schizosaccharomyces)
2024-09-05 Added CONSTRAINT never_in_taxon NCBITaxon:4932 (Saccharomyces cerevisiae)
2024-09-05 Added CONSTRAINT never_in_taxon NCBITaxon:2157 (Archaea)
2024-09-05 Added CONSTRAINT never_in_taxon NCBITaxon:2 (Bacteria)
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