GO:0060561
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apoptotic process involved in morphogenesis
Biological Process
Definition (GO:0060561 GONUTS page)
Any apoptotic process that contributes to the shaping of an anatomical structure.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
apoptosis involved in morphogenesis | narrow |
morphogenetic apoptosis | related |
apoptosis involved in development | related |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0060561
Child Term | Relationship to GO:0060561 |
---|---|
apoptotic process involved in embryonic digit morphogenesis
|
is_a |
negative regulation of apoptotic process involved in morphogenesis
|
negatively_regulates |
epithelial cell apoptotic process involved in palatal shelf morphogenesis
|
is_a |
regulation of apoptotic process involved in morphogenesis
|
regulates |
positive regulation of apoptotic process involved in morphogenesis
|
positively_regulates |
apoptotic process involved in mammary gland involution
|
is_a |
apoptotic process involved in tube lumen cavitation
|
is_a |
clearance of cells from fusion plate by apoptotic process
|
is_a |
mesenchymal cell apoptotic process involved in nephron morphogenesis
|
is_a |
apoptotic process involved in heart morphogenesis
|
is_a |
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Annotating cell death and apoptosis using the new guidelines | Link |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0060561 | apoptotic process involved in morphogenesis | Never in Taxon | 4896 | Schizosaccharomyces pombe | |
GO:0060561 | apoptotic process involved in morphogenesis | Only in Taxon | 33154 | Opisthokonta |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A1D5Q3B3 | 9544 | A0A1D5Q3B3_MACMU | GO:0006915 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2I2YB08 | 9595 | A0A2I2YB08_GORGO | GO:0006915 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2J8LBR9 | 9598 | A0A2J8LBR9_PANTR | GO:0006915 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2U9DQQ6 | 7955 | A0A2U9DQQ6_DANRE | GO:0006915 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A3Q2LIL1 | 9796 | A0A3Q2LIL1_HORSE | GO:0006915 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A9L0RP63 | 9796 | A0A9L0RP63_HORSE | GO:0006915 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | B8A526 | 7955 | B8A526_DANRE | GO:0006915 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | F1SV36 | 9823 | F1SV36_PIG | GO:0006915 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | F1SV37 | 9823 | F1SV37_PIG | GO:0006915 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | F6RKH7 | 9258 | F6RKH7_ORNAN | GO:0006915 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0060561 based on ALL annotations
The top 100 of 441 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
apoptotic process involved in morphogenesis
|
314,417.38 | 100.00 | 620 | 620 |
negative regulation of intracellular transport
|
126,209.81 | 14.43 | 114 | 284 |
forebrain neuroblast division
|
192,636.02 | 12.89 | 87 | 142 |
trachea gland development
|
154,544.14 | 12.25 | 87 | 177 |
anatomical structure regression
|
114,934.09 | 11.28 | 87 | 238 |
positive regulation of cell proliferation in bone marrow
|
117,055.83 | 11.24 | 86 | 231 |
formation of radial glial scaffolds
|
109,856.68 | 11.13 | 87 | 249 |
Scrib-APC-beta-catenin complex
|
147,622.80 | 10.89 | 77 | 164 |
regulation of endothelial cell chemotaxis to fibroblast growth factor
|
99,470.23 | 10.77 | 87 | 275 |
negative regulation of apoptotic process in bone marrow cell
|
91,972.44 | 10.39 | 86 | 294 |
Totals | 9083 | 164621 |
No co-occurrence statistics for GO:0060561 based on MANUAL annotations
The top 100 of 397 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
apoptotic process involved in morphogenesis
|
33,123.05 | 100.00 | 39 | 39 |
Scrib-APC-beta-catenin complex
|
22,082.04 | 18.60 | 8 | 12 |
establishment of apical/basal cell polarity
|
10,684.86 | 16.67 | 10 | 31 |
myelin sheath abaxonal region
|
12,618.31 | 15.38 | 8 | 21 |
cochlear nucleus development
|
11,521.06 | 14.81 | 8 | 23 |
synaptic vesicle targeting
|
10,191.71 | 14.04 | 8 | 26 |
polarized epithelial cell differentiation
|
9,463.73 | 13.56 | 8 | 28 |
mammary gland duct morphogenesis
|
7,844.93 | 13.24 | 9 | 38 |
establishment of T cell polarity
|
7,270.91 | 12.68 | 9 | 41 |
extrinsic component of postsynaptic density membrane
|
7,245.67 | 10.94 | 7 | 32 |
Totals | 505 | 7804 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:33154 (Opisthokonta) |
2024-09-05 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4896 (Schizosaccharomyces pombe) |
2016-06-01 | Deleted | RELATION | is a GO:0010623 (programmed cell death involved in cell development) |
2014-03-07 | Added | RELATION | is a GO:1902742 (apoptotic process involved in development) |
2014-03-07 | Deleted | RELATION | is a GO:0006915 (apoptotic process) |
2013-11-28 | Deleted | RELATION | is a GO:0044767 (single-organism developmental process) |
2013-03-10 | Added | SYNONYM | apoptosis involved in development |
2013-03-10 | Deleted | RELATION | is a GO:0048646 (anatomical structure formation involved in morphogenesis) |
2012-12-21 | Added | RELATION | is a GO:0044767 (single-organism developmental process) |
2012-11-21 | Deleted | DEFINITION | The process of apoptosis that contributes to the shaping of an anatomical structure. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2012-04-01 | Updated | TERM | apoptotic process involved in morphogenesis |
2009-05-03 | Added | TERM | apoptosis involved in morphogenesis |
Timestamp | Action | Category | Detail |
---|---|---|---|
2013-03-10 | Added | SYNONYM | apoptosis involved in development |
2012-11-21 | Deleted | DEFINITION | The process of apoptosis that contributes to the shaping of an anatomical structure. |
2012-11-21 | Added | DEFINITION | Any apoptotic process that contributes to the shaping of an anatomical structure. |
2012-04-01 | Added | SYNONYM | apoptosis involved in morphogenesis |
2009-05-03 | Added | DEFINITION | The process of apoptosis that contributes to the shaping of an anatomical structure. |
2009-05-03 | Added | SYNONYM | morphogenetic apoptosis |
Timestamp | Action | Category | Detail |
---|---|---|---|
2016-06-01 | Deleted | RELATION | is a GO:0010623 (programmed cell death involved in cell development) |
2014-03-07 | Added | RELATION | is a GO:1902742 (apoptotic process involved in development) |
2014-03-07 | Deleted | RELATION | is a GO:0006915 (apoptotic process) |
2013-11-28 | Deleted | RELATION | is a GO:0044767 (single-organism developmental process) |
2013-03-10 | Deleted | RELATION | is a GO:0048646 (anatomical structure formation involved in morphogenesis) |
2012-12-21 | Added | RELATION | is a GO:0044767 (single-organism developmental process) |
2012-10-29 | Added | RELATION | is a GO:0048646 (anatomical structure formation involved in morphogenesis) |
2009-05-11 | Added | RELATION | is a GO:0010623 (programmed cell death involved in cell development) |
2009-05-03 | Added | RELATION | is a GO:0006915 (apoptotic process) |
2009-05-03 | Added | RELATION | part of GO:0009653 (anatomical structure morphogenesis) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:33154 (Opisthokonta) |
2024-09-05 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4896 (Schizosaccharomyces pombe) |
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