This term is obsolete.

GO:0061908 JSON

phagophore

Cellular Component

Definition (GO:0061908 GONUTS page)

A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo (for example cytoplasmic components) to become an autophagosome or Cvt vesicle. PMID:22664348 PMID:24201109

11,414 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
isolation membrane related

Ancestor Chart

Ancestor chart for GO:0061908
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Ancestor chart

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0061908 phagophore Only in Taxon 131567 cellular organisms

More information on taxon constraints in GO is available here

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A0A096MJ18 10116 A0A096MJ18_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A096MK97 10116 A0A096MK97_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0D1E8X3 237631 A0A0D1E8X3_USTMA GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A0G2JZ79 10116 SIR1_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1L8G9S0 8355 A0A1L8G9S0_XENLA GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A1S4L3K3 6945 A0A1S4L3K3_IXOSC GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A1W2Q633 10116 A0A1W2Q633_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A2K5ATM2 6239 A0A2K5ATM2_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A2K5ATM9 6239 A0A2K5ATM9_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A2K5ATP6 6239 A0A2K5ATP6_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0061908 based on ALL annotations
The top 100 of 293 co-occurring terms
Co-occurring Term PR S% #Together #Compared
phagophore
17,087.90 100.00 11,408 11,408
glycophagy
6,224.08 27.39 5,987 16,437
mitochondria-associated endoplasmic reticulum membrane contact site
7,326.37 24.76 4,215 9,831
Atg12-Atg5-Atg16 complex
6,744.90 23.95 4,319 10,942
Atg8-family ligase activity
6,411.52 23.81 4,501 11,996
phagophore assembly site membrane
3,544.34 19.65 8,992 43,352
cellular response to nitrogen starvation
4,193.44 17.65 4,405 17,950
autophagy of mitochondrion
2,930.32 16.86 10,357 60,396
piecemeal microautophagy of the nucleus
2,783.05 16.06 10,494 64,433
reticulophagy
2,941.82 14.88 5,967 34,660
Totals 137500 7979341
No co-occurrence statistics for GO:0061908 based on MANUAL annotations
The top 100 of 147 co-occurring terms
Co-occurring Term PR S% #Together #Compared
phagophore
4,349.49 100.00 297 297
Atg8-family ligase activity
2,101.91 24.94 101 209
Atg12-Atg5-Atg16 complex
1,736.29 22.20 99 248
pexophagy
1,262.03 19.61 112 386
aggrephagy
1,007.68 15.76 98 423
glycophagy
624.49 11.67 114 794
autophagosome
524.24 11.20 182 1,510
piecemeal microautophagy of the nucleus
460.33 10.17 214 2,022
reticulophagy
523.76 10.11 115 955
phagophore assembly site membrane
509.94 9.58 102 870
Totals 2554 39256

Change Log

Timestamp Action Category Detail
2024-03-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
2019-09-12 Added RELATION part of GO:0005737 (cytoplasm)
2019-09-12 Added RELATION is a GO:0110165 (cellular anatomical structure)
2019-09-12 Deleted RELATION is a GO:0044444 (obsolete cytoplasmic part)
2017-11-15 Deleted DEFINITION A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo to become an autophagosome.
2017-11-15 Added DEFINITION A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo (for example cytoplasmic components) to become an autophagosome or Cvt vesicle.
2017-06-30 Added TERM phagophore
2017-06-30 Added DEFINITION A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo to become an autophagosome.
2017-06-30 Added SYNONYM isolation membrane
2017-06-30 Added RELATION is a GO:0044444 (obsolete cytoplasmic part)
Timestamp Action Category Detail
2017-06-30 Added TERM phagophore
Timestamp Action Category Detail
2017-11-15 Deleted DEFINITION A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo to become an autophagosome.
2017-11-15 Added DEFINITION A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo (for example cytoplasmic components) to become an autophagosome or Cvt vesicle.
2017-06-30 Added DEFINITION A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo to become an autophagosome.
2017-06-30 Added SYNONYM isolation membrane
Timestamp Action Category Detail
2019-09-12 Added RELATION part of GO:0005737 (cytoplasm)
2019-09-12 Added RELATION is a GO:0110165 (cellular anatomical structure)
2019-09-12 Deleted RELATION is a GO:0044444 (obsolete cytoplasmic part)
2017-06-30 Added RELATION is a GO:0044444 (obsolete cytoplasmic part)
2017-06-30 Added RELATION capable of part of GO:0000045 (autophagosome assembly)
Timestamp Action Category Detail
Timestamp Action Category Detail
2024-03-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
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