GO:0061908
JSON
phagophore
Cellular Component
Definition (GO:0061908 GONUTS page)
A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo (for example cytoplasmic components) to become an autophagosome or Cvt vesicle. PMID:22664348 PMID:24201109
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
isolation membrane | related |
Ancestor Chart
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0061908 | phagophore | Only in Taxon | 131567 | cellular organisms |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A096MJ18 | 10116 | A0A096MJ18_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A096MK97 | 10116 | A0A096MK97_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0D1E8X3 | 237631 | A0A0D1E8X3_USTMA | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A0G2JZ79 | 10116 | SIR1_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1L8G9S0 | 8355 | A0A1L8G9S0_XENLA | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A1S4L3K3 | 6945 | A0A1S4L3K3_IXOSC | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A1W2Q633 | 10116 | A0A1W2Q633_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A2K5ATM2 | 6239 | A0A2K5ATM2_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2K5ATM9 | 6239 | A0A2K5ATM9_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2K5ATP6 | 6239 | A0A2K5ATP6_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0061908 based on ALL annotations
The top 100 of 293 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
phagophore
|
17,087.90 | 100.00 | 11,408 | 11,408 |
glycophagy
|
6,224.08 | 27.39 | 5,987 | 16,437 |
mitochondria-associated endoplasmic reticulum membrane contact site
|
7,326.37 | 24.76 | 4,215 | 9,831 |
Atg12-Atg5-Atg16 complex
|
6,744.90 | 23.95 | 4,319 | 10,942 |
Atg8-family ligase activity
|
6,411.52 | 23.81 | 4,501 | 11,996 |
phagophore assembly site membrane
|
3,544.34 | 19.65 | 8,992 | 43,352 |
cellular response to nitrogen starvation
|
4,193.44 | 17.65 | 4,405 | 17,950 |
autophagy of mitochondrion
|
2,930.32 | 16.86 | 10,357 | 60,396 |
piecemeal microautophagy of the nucleus
|
2,783.05 | 16.06 | 10,494 | 64,433 |
reticulophagy
|
2,941.82 | 14.88 | 5,967 | 34,660 |
Totals | 137500 | 7979341 |
No co-occurrence statistics for GO:0061908 based on MANUAL annotations
The top 100 of 147 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
phagophore
|
4,349.49 | 100.00 | 297 | 297 |
Atg8-family ligase activity
|
2,101.91 | 24.94 | 101 | 209 |
Atg12-Atg5-Atg16 complex
|
1,736.29 | 22.20 | 99 | 248 |
pexophagy
|
1,262.03 | 19.61 | 112 | 386 |
aggrephagy
|
1,007.68 | 15.76 | 98 | 423 |
glycophagy
|
624.49 | 11.67 | 114 | 794 |
autophagosome
|
524.24 | 11.20 | 182 | 1,510 |
piecemeal microautophagy of the nucleus
|
460.33 | 10.17 | 214 | 2,022 |
reticulophagy
|
523.76 | 10.11 | 115 | 955 |
phagophore assembly site membrane
|
509.94 | 9.58 | 102 | 870 |
Totals | 2554 | 39256 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2019-09-12 | Added | RELATION | part of GO:0005737 (cytoplasm) |
2019-09-12 | Added | RELATION | is a GO:0110165 (cellular anatomical structure) |
2019-09-12 | Deleted | RELATION | is a GO:0044444 (obsolete cytoplasmic part) |
2017-11-15 | Deleted | DEFINITION | A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo to become an autophagosome. |
2017-11-15 | Added | DEFINITION | A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo (for example cytoplasmic components) to become an autophagosome or Cvt vesicle. |
2017-06-30 | Added | TERM | phagophore |
2017-06-30 | Added | DEFINITION | A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo to become an autophagosome. |
2017-06-30 | Added | SYNONYM | isolation membrane |
2017-06-30 | Added | RELATION | is a GO:0044444 (obsolete cytoplasmic part) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2017-06-30 | Added | TERM | phagophore |
Timestamp | Action | Category | Detail |
---|---|---|---|
2017-11-15 | Deleted | DEFINITION | A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo to become an autophagosome. |
2017-11-15 | Added | DEFINITION | A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo (for example cytoplasmic components) to become an autophagosome or Cvt vesicle. |
2017-06-30 | Added | DEFINITION | A disk-like structure that expands, rounds up into a cup-shaped structure, and eventually closes around its cargo to become an autophagosome. |
2017-06-30 | Added | SYNONYM | isolation membrane |
Timestamp | Action | Category | Detail |
---|---|---|---|
2019-09-12 | Added | RELATION | part of GO:0005737 (cytoplasm) |
2019-09-12 | Added | RELATION | is a GO:0110165 (cellular anatomical structure) |
2019-09-12 | Deleted | RELATION | is a GO:0044444 (obsolete cytoplasmic part) |
2017-06-30 | Added | RELATION | is a GO:0044444 (obsolete cytoplasmic part) |
2017-06-30 | Added | RELATION | capable of part of GO:0000045 (autophagosome assembly) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
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