This term is obsolete.

GO:0070038 JSON

rRNA (pseudouridine-N3-)-methyltransferase activity

Molecular Function

Definition (GO:0070038 GONUTS page)

Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N3-methylpseudouridine.

26,320 annotations

Ancestor Chart

Ancestor chart for GO:0070038
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Ancestor chart

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Annotating to catalytic activities using the IPI evidence code Link
Describing enzyme functions that catalyse multi-stage reactions Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
IEA Review protein Q9VNA3 7227 Q9VNA3_DROME GO:0016740 Requested by Helen Attrill. https://github.com/geneontology/go-annotation/issues/3377PMID:28597544: 'SDF2 and SDF2L1 associate with ERdj3 and act as components in the BiP chaperone cycle to prevent the aggregation of misfolded proteins.'They are not enzymes and are ER resident proteins, not membrane or extracellular proteins. IPR016093|IPR036300
NOT-qualified manual protein A0A8I5YBY9 10116 A0A8I5YBY9_RAT GO:0008757 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I6AGH5 10116 A0A8I6AGH5_RAT GO:0008168 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A2VDP2 9913 PCMD1_BOVIN GO:0008757 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024
NOT-qualified manual protein A6JFH4 10116 A6JFH4_RAT GO:0008757 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A6JFH5 10116 A6JFH5_RAT GO:0008757 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A7XRZ1 227321 TDIE_EMENI GO:0008757 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:17704773
NOT-qualified manual protein D3Z930 10116 D3Z930_RAT GO:0008168 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein D4A629 10116 D4A629_RAT GO:0008757 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein P02521 9031 ARLY1_CHICK GO:0003824 1 NOT-qualified manual annotation exists with evidence code ECO:0000304 from this reference: PMID:11258884

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0070038 based on ALL annotations
The top 23 of 23 co-occurring terms
Co-occurring Term PR S% #Together #Compared
rRNA (pseudouridine-N3-)-methyltransferase activity
7,407.33 100.00 26,317 26,317
rRNA methylation
592.50 8.00 26,317 329,008
rRNA processing
176.14 2.38 26,317 1,106,747
methylation
54.09 0.73 26,317 3,603,867
methyltransferase activity
52.13 0.70 26,317 3,739,251
cytoplasm
7.71 0.10 26,317 25,285,876
cellular_component
0.94 0.01 8 62,739
biological_process
0.89 0.01 8 66,439
molecular_function
0.85 0.01 8 69,707
negative regulation of ribosome biogenesis
0.56 0.00 3 40,002
Totals 157983 125654963
No co-occurrence statistics for GO:0070038 based on MANUAL annotations
The top 7 of 7 co-occurring terms
Co-occurring Term PR S% #Together #Compared
rRNA (pseudouridine-N3-)-methyltransferase activity
1,291,799.00 100.00 1 1
rRNA methylation
1,583.09 0.12 1 816
rRNA base methylation
1,172.23 0.09 1 1,102
ribosome binding
503.43 0.04 1 2,566
protein homodimerization activity
242.87 0.02 1 5,319
protein binding
30.89 0.00 1 41,817
cytoplasm
7.20 0.00 1 179,389
Totals 7 231010

Change Log

Timestamp Action Category Detail
2008-10-02 Added TERM rRNA (pseudouridine-N3-)-methyltransferase activity
2008-10-02 Added DEFINITION Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N3-methylpseudouridine.
2008-10-02 Added RELATION is a GO:0070037 (rRNA (pseudouridine) methyltransferase activity)
Timestamp Action Category Detail
2008-10-02 Added TERM rRNA (pseudouridine-N3-)-methyltransferase activity
Timestamp Action Category Detail
2008-10-02 Added DEFINITION Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N3-methylpseudouridine.
Timestamp Action Category Detail
2008-10-02 Added RELATION is a GO:0070037 (rRNA (pseudouridine) methyltransferase activity)
Timestamp Action Category Detail
Timestamp Action Category Detail
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