GO:0070337
JSON
3'-flap-structured DNA binding
Molecular Function
Definition (GO:0070337 GONUTS page)
Binding to a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule. PMID:15189154
Ancestor Chart
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Binding term considerations | Link |
Considerations when annotating from ChiP assay results | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
IEA Review | protein | P40999 | 284812 | PMT1M_SCHPO | GO:0003677 | To remove over-annotation from InterPro entries IPR001525 and IPR018117; for this particular C5-methyltransferase family member, there is a Ser residue in the active site that may be responsible. Reported by InterPro on 19-10-2012 | |
NOT-qualified manual | protein | A0A0G2K0G0 | 10116 | A0A0G2K0G0_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1B0GWQ8 | 10116 | A0A1B0GWQ8_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5Y5Z6 | 10116 | A0A8I5Y5Z6_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5ZKC5 | 10116 | A0A8I5ZKC5_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A2T0 | 10116 | A0A8I6A2T0_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6A7B9 | 10116 | A0A8I6A7B9_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6AB42 | 10116 | A0A8I6AB42_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6ASJ7 | 10116 | A0A8I6ASJ7_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I6AUW9 | 10116 | A0A8I6AUW9_RAT | GO:0003677 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0070337 based on ALL annotations
The top 100 of 101 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
3'-flap-structured DNA binding
|
1,709,989.40 | 100.00 | 114 | 114 |
positive regulation of strand invasion
|
1,586,588.10 | 74.38 | 90 | 97 |
telomeric G-quadruplex DNA binding
|
696,375.75 | 36.73 | 90 | 221 |
8-hydroxy-2'-deoxyguanosine DNA binding
|
563,732.80 | 30.30 | 90 | 273 |
regulation of growth rate
|
495,833.34 | 25.57 | 78 | 269 |
telomeric D-loop binding
|
459,400.12 | 25.07 | 90 | 335 |
bubble DNA binding
|
295,592.94 | 16.64 | 93 | 538 |
MutLalpha complex binding
|
297,677.10 | 16.64 | 90 | 517 |
5'-flap-structured DNA binding
|
1,709,989.50 | 13.16 | 15 | 15 |
response to UV-C
|
190,469.11 | 10.82 | 90 | 808 |
Totals | 5695 | 127437490 |
No co-occurrence statistics for GO:0070337 based on MANUAL annotations
The top 77 of 77 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
3'-flap-structured DNA binding
|
107,649.92 | 100.00 | 12 | 12 |
positive regulation of strand invasion
|
86,119.94 | 30.77 | 4 | 5 |
8-hydroxy-2'-deoxyguanosine DNA binding
|
39,145.43 | 21.05 | 4 | 11 |
telomeric G-quadruplex DNA binding
|
33,123.05 | 19.05 | 4 | 13 |
telomeric D-loop binding
|
30,757.12 | 18.18 | 4 | 14 |
forked DNA-dependent helicase activity
|
23,922.21 | 15.38 | 4 | 18 |
MutLalpha complex binding
|
18,721.73 | 12.90 | 4 | 23 |
double-strand break repair via single-strand annealing, removal of nonhomologous ends
|
20,184.36 | 12.00 | 3 | 16 |
replication fork arrest at tRNA locus
|
107,649.91 | 8.33 | 1 | 1 |
5'-flap-structured DNA binding
|
107,649.91 | 8.33 | 1 | 1 |
Totals | 264 | 553916 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Added | DEFINITION | Binding to a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule. |
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule. |
2009-07-03 | Deleted | DEFINITION | Interacting selectively with a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule. |
2009-07-03 | Added | DEFINITION | Interacting selectively and non-covalently with a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule. |
2009-02-16 | Added | TERM | 3'-flap-structured DNA binding |
2009-02-16 | Added | DEFINITION | Interacting selectively with a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule. |
2009-02-16 | Added | RELATION | is a GO:0070336 (flap-structured DNA binding) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-02-16 | Added | TERM | 3'-flap-structured DNA binding |
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Added | DEFINITION | Binding to a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule. |
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule. |
2009-07-03 | Deleted | DEFINITION | Interacting selectively with a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule. |
2009-07-03 | Added | DEFINITION | Interacting selectively and non-covalently with a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule. |
2009-02-16 | Added | DEFINITION | Interacting selectively with a 3'-flap structure in DNA. A DNA flap structure is one in which a single-stranded 3'-end of DNA or RNA protrudes from a double-stranded DNA molecule. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-02-16 | Added | RELATION | is a GO:0070336 (flap-structured DNA binding) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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