GO:0070417
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cellular response to cold
Biological Process
Definition (GO:0070417 GONUTS page)
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
cellular response to cold stress | exact |
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0070417
Child Term | Relationship to GO:0070417 |
---|---|
trehalose metabolism in response to cold stress
|
is_a |
cellular response to freezing
|
is_a |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A1XCI6 | 4577 | A1XCI6_MAIZE | GO:0009409 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:17005920 | |
NOT-qualified manual | protein | F4J5N9 | 3702 | F4J5N9_ARATH | GO:0009409 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:19248824 | |
NOT-qualified manual | protein | O22788 | 3702 | PXG3_ARATH | GO:0009409 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:10965948 | |
NOT-qualified manual | protein | O22914 | 3702 | CP121_ARATH | GO:0070417 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:18974062 | |
NOT-qualified manual | protein | O82345 | 3702 | BAG6_ARATH | GO:0009409 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:16636050 | |
NOT-qualified manual | protein | P0DO54 | 4641 | TIP12_MUSAC | GO:0009409 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:29778840 | |
NOT-qualified manual | protein | Q43247 | 4577 | G3PC3_MAIZE | GO:0009409 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:9037163 | |
NOT-qualified manual | protein | Q43359 | 4577 | Q43359_MAIZE | GO:0009409 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:9037163 | |
NOT-qualified manual | protein | Q93WF6 | 3702 | SAG21_ARATH | GO:0009409 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:12172015 | |
NOT-qualified manual | protein | Q96262 | 3702 | PCAP1_ARATH | GO:0009409 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000270 from this reference: PMID:17264065 |
Cross-references
Database | ID | Description |
---|---|---|
InterPro | IPR028618 | ATP-dependent RNA helicase DeaD |
Replaces
This term can be used instead of these obsolete terms:
GO Identifier | GO Term Name | Reason |
---|---|---|
GO:0061411 | obsolete positive regulation of transcription from RNA polymerase II promoter in response to cold | consider GO:0070417 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0070417 based on ALL annotations
The top 100 of 1,035 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
cellular response to cold
|
20,992.76 | 100.00 | 9,286 | 9,286 |
RNA strand annealing activity
|
5,028.06 | 22.57 | 7,395 | 30,875 |
response to cold
|
3,470.22 | 15.92 | 7,531 | 45,558 |
ribosomal large subunit assembly
|
984.23 | 4.64 | 7,492 | 159,797 |
hydrolase activity, acting on acid anhydrides
|
676.99 | 2.54 | 1,000 | 31,009 |
RNA helicase activity
|
391.78 | 1.86 | 7,494 | 401,554 |
RNA catabolic process
|
376.71 | 1.79 | 7,385 | 411,540 |
chromatin extrusion motor activity
|
365.95 | 1.71 | 4,325 | 248,104 |
ATP-dependent H3-H4 histone complex chaperone activity
|
365.94 | 1.71 | 4,325 | 248,109 |
cohesin loader activity
|
365.65 | 1.71 | 4,325 | 248,310 |
Totals | 80359 | 2841949 |
No co-occurrence statistics for GO:0070417 based on MANUAL annotations
The top 100 of 788 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
cellular response to cold
|
9,640.29 | 100.00 | 134 | 134 |
temperature homeostasis
|
1,128.12 | 5.07 | 11 | 94 |
regulation of apoptotic DNA fragmentation
|
3,856.12 | 4.20 | 6 | 15 |
lipid droplet fusion
|
2,224.68 | 3.90 | 6 | 26 |
eiF2alpha phosphorylation in response to endoplasmic reticulum stress
|
9,640.29 | 3.73 | 5 | 5 |
positive regulation of translation initiation in response to endoplasmic reticulum stress
|
9,640.29 | 3.73 | 5 | 5 |
regulation of fatty acid metabolic process
|
1,071.14 | 3.68 | 7 | 63 |
negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation
|
6,025.18 | 3.65 | 5 | 8 |
glial cell fate commitment
|
4,016.79 | 3.55 | 5 | 12 |
regulation of translational initiation by eIF2 alpha phosphorylation
|
4,016.79 | 3.55 | 5 | 12 |
Totals | 502 | 6109 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2011-05-08 | Deleted | DEFINITION | A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. |
2011-05-08 | Added | DEFINITION | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. |
2009-02-25 | Added | SYNONYM | cellular response to cold stress |
2009-02-25 | Added | RELATION | is a GO:0033554 (cellular response to stress) |
2009-02-25 | Added | RELATION | is a GO:0009409 (response to cold) |
2009-02-25 | Added | TERM | cellular response to cold |
2009-02-25 | Added | DEFINITION | A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-02-25 | Added | TERM | cellular response to cold |
Timestamp | Action | Category | Detail |
---|---|---|---|
2011-05-08 | Deleted | DEFINITION | A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. |
2011-05-08 | Added | DEFINITION | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. |
2009-02-25 | Added | SYNONYM | cellular response to cold stress |
2009-02-25 | Added | DEFINITION | A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-02-25 | Added | RELATION | is a GO:0033554 (cellular response to stress) |
2009-02-25 | Added | RELATION | is a GO:0009409 (response to cold) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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