GO:0071254
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cytoplasmic U snRNP body
Cellular Component
Definition (GO:0071254 GONUTS page)
A ribonucleoprotein complex that can be visualized as a focus in the cytoplasm, and contains uridine-rich small nuclear ribonucleoproteins (U snRNPs) and essential snRNP assembly factors. These U bodies are invariably found in association with P bodies. PMID:17595295
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
U-body | exact |
U body | exact |
Ancestor Chart
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0071254 | cytoplasmic U snRNP body | Only in Taxon | 131567 | cellular organisms |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A096MJ18 | 10116 | A0A096MJ18_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A096MK97 | 10116 | A0A096MK97_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0D1E8X3 | 237631 | A0A0D1E8X3_USTMA | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A0G2JZ79 | 10116 | SIR1_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1L8G9S0 | 8355 | A0A1L8G9S0_XENLA | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A1S4L3K3 | 6945 | A0A1S4L3K3_IXOSC | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A1W2Q633 | 10116 | A0A1W2Q633_RAT | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A2K5ATM2 | 6239 | A0A2K5ATM2_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2K5ATM9 | 6239 | A0A2K5ATM9_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 | |
NOT-qualified manual | protein | A0A2K5ATP6 | 6239 | A0A2K5ATP6_CAEEL | GO:0005737 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033 |
Cross-references
Database | ID | Description |
---|---|---|
UniProtKB-SubCell | SL-0553 | U-body |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0071254 based on ALL annotations
The top 83 of 83 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
cytoplasmic U snRNP body
|
154,345.83 | 100.00 | 1,263 | 1,263 |
histone pre-mRNA DCP binding
|
137,609.53 | 84.15 | 1,184 | 1,328 |
U7 snRNA binding
|
68,579.05 | 43.37 | 1,197 | 2,694 |
mRNA 3'-end processing by stem-loop binding and cleavage
|
12,437.02 | 8.02 | 1,197 | 14,855 |
U7 snRNP
|
8,172.75 | 3.22 | 96 | 1,813 |
flight behavior
|
33,553.45 | 3.16 | 45 | 207 |
nuclear body
|
3,952.17 | 2.56 | 1,198 | 46,786 |
positive regulation of G1/S transition of mitotic cell cycle
|
4,148.27 | 1.94 | 82 | 3,051 |
SmD-containing SMN-Sm protein complex
|
147,635.14 | 1.74 | 22 | 23 |
SMN-Gemin2 complex
|
28,062.88 | 1.62 | 22 | 121 |
Totals | 8346 | 182449391 |
No co-occurrence statistics for GO:0071254 based on MANUAL annotations
The top 61 of 61 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
cytoplasmic U snRNP body
|
33,994.71 | 100.00 | 38 | 38 |
histone pre-mRNA DCP binding
|
23,717.24 | 58.82 | 30 | 43 |
U7 snRNA binding
|
15,540.44 | 42.11 | 32 | 70 |
mRNA 3'-end processing by stem-loop binding and cleavage
|
4,064.59 | 11.74 | 33 | 276 |
histone locus body
|
3,777.19 | 5.71 | 4 | 36 |
U7 snRNP
|
2,683.79 | 5.56 | 6 | 76 |
SmD-containing SMN-Sm protein complex
|
22,663.14 | 5.13 | 2 | 3 |
flight behavior
|
4,079.37 | 5.00 | 3 | 25 |
SMN-Gemin2 complex
|
11,331.57 | 4.76 | 2 | 6 |
cytoplasmic U snRNP body assembly
|
33,994.71 | 2.63 | 1 | 1 |
Totals | 269 | 564851 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2019-09-12 | Deleted | RELATION | is a GO:0044444 (obsolete cytoplasmic part) |
2019-09-12 | Added | RELATION | part of GO:0005737 (cytoplasm) |
2018-03-11 | Added | RELATION | is a GO:1990904 (ribonucleoprotein complex) |
2018-03-11 | Deleted | RELATION | is a GO:0030529 (intracellular ribonucleoprotein complex) |
2009-12-10 | Added | DEFINITION | A ribonucleoprotein complex that can be visualized as a focus in the cytoplasm, and contains uridine-rich small nuclear ribonucleoproteins (U snRNPs) and essential snRNP assembly factors. These U bodies are invariably found in association with P bodies. |
2009-12-10 | Deleted | DEFINITION | A ribonucleoprotein complexthat can be visualized as a focus in the cytoplasm, and contains uridine-rich small nuclear ribonucleoproteins (U snRNPs) and essential snRNP assembly factors. These U bodies are invariably found in association with P bodiesp |
2009-12-06 | Added | SYNONYM | U-body |
2009-12-06 | Added | SYNONYM | U body |
2009-12-06 | Added | RELATION | is a GO:0030529 (intracellular ribonucleoprotein complex) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-12-06 | Added | TERM | cytoplasmic U snRNP body |
Timestamp | Action | Category | Detail |
---|---|---|---|
2009-12-10 | Added | DEFINITION | A ribonucleoprotein complex that can be visualized as a focus in the cytoplasm, and contains uridine-rich small nuclear ribonucleoproteins (U snRNPs) and essential snRNP assembly factors. These U bodies are invariably found in association with P bodies. |
2009-12-10 | Deleted | DEFINITION | A ribonucleoprotein complexthat can be visualized as a focus in the cytoplasm, and contains uridine-rich small nuclear ribonucleoproteins (U snRNPs) and essential snRNP assembly factors. These U bodies are invariably found in association with P bodiesp |
2009-12-06 | Added | SYNONYM | U-body |
2009-12-06 | Added | SYNONYM | U body |
2009-12-06 | Added | DEFINITION | A ribonucleoprotein complexthat can be visualized as a focus in the cytoplasm, and contains uridine-rich small nuclear ribonucleoproteins (U snRNPs) and essential snRNP assembly factors. These U bodies are invariably found in association with P bodiesp |
Timestamp | Action | Category | Detail |
---|---|---|---|
2019-09-12 | Deleted | RELATION | is a GO:0044444 (obsolete cytoplasmic part) |
2019-09-12 | Added | RELATION | part of GO:0005737 (cytoplasm) |
2018-03-11 | Added | RELATION | is a GO:1990904 (ribonucleoprotein complex) |
2018-03-11 | Deleted | RELATION | is a GO:0030529 (intracellular ribonucleoprotein complex) |
2009-12-06 | Added | RELATION | is a GO:0030529 (intracellular ribonucleoprotein complex) |
2009-12-06 | Added | RELATION | is a GO:0044444 (obsolete cytoplasmic part) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
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