This term is obsolete.

GO:0071254 JSON

cytoplasmic U snRNP body

Cellular Component

Definition (GO:0071254 GONUTS page)

A ribonucleoprotein complex that can be visualized as a focus in the cytoplasm, and contains uridine-rich small nuclear ribonucleoproteins (U snRNPs) and essential snRNP assembly factors. These U bodies are invariably found in association with P bodies. PMID:17595295

1,270 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
U-body exact
U body exact

Ancestor Chart

Ancestor chart for GO:0071254
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Ancestor chart

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0071254 cytoplasmic U snRNP body Only in Taxon 131567 cellular organisms

More information on taxon constraints in GO is available here

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A0A096MJ18 10116 A0A096MJ18_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A096MK97 10116 A0A096MK97_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0D1E8X3 237631 A0A0D1E8X3_USTMA GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A0G2JZ79 10116 SIR1_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1L8G9S0 8355 A0A1L8G9S0_XENLA GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A1S4L3K3 6945 A0A1S4L3K3_IXOSC GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A1W2Q633 10116 A0A1W2Q633_RAT GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A2K5ATM2 6239 A0A2K5ATM2_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A2K5ATM9 6239 A0A2K5ATM9_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A2K5ATP6 6239 A0A2K5ATP6_CAEEL GO:0005737 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033

Cross-references

Database ID Description
UniProtKB-SubCell SL-0553 U-body

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0071254 based on ALL annotations
The top 83 of 83 co-occurring terms
Co-occurring Term PR S% #Together #Compared
cytoplasmic U snRNP body
154,345.83 100.00 1,263 1,263
histone pre-mRNA DCP binding
137,609.53 84.15 1,184 1,328
U7 snRNA binding
68,579.05 43.37 1,197 2,694
mRNA 3'-end processing by stem-loop binding and cleavage
12,437.02 8.02 1,197 14,855
U7 snRNP
8,172.75 3.22 96 1,813
flight behavior
33,553.45 3.16 45 207
nuclear body
3,952.17 2.56 1,198 46,786
positive regulation of G1/S transition of mitotic cell cycle
4,148.27 1.94 82 3,051
SmD-containing SMN-Sm protein complex
147,635.14 1.74 22 23
SMN-Gemin2 complex
28,062.88 1.62 22 121
Totals 8346 182449391
No co-occurrence statistics for GO:0071254 based on MANUAL annotations
The top 61 of 61 co-occurring terms
Co-occurring Term PR S% #Together #Compared
cytoplasmic U snRNP body
33,994.71 100.00 38 38
histone pre-mRNA DCP binding
23,717.24 58.82 30 43
U7 snRNA binding
15,540.44 42.11 32 70
mRNA 3'-end processing by stem-loop binding and cleavage
4,064.59 11.74 33 276
histone locus body
3,777.19 5.71 4 36
U7 snRNP
2,683.79 5.56 6 76
SmD-containing SMN-Sm protein complex
22,663.14 5.13 2 3
flight behavior
4,079.37 5.00 3 25
SMN-Gemin2 complex
11,331.57 4.76 2 6
cytoplasmic U snRNP body assembly
33,994.71 2.63 1 1
Totals 269 564851

Change Log

Timestamp Action Category Detail
2024-03-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
2019-09-12 Deleted RELATION is a GO:0044444 (obsolete cytoplasmic part)
2019-09-12 Added RELATION part of GO:0005737 (cytoplasm)
2018-03-11 Added RELATION is a GO:1990904 (ribonucleoprotein complex)
2018-03-11 Deleted RELATION is a GO:0030529 (intracellular ribonucleoprotein complex)
2009-12-10 Added DEFINITION A ribonucleoprotein complex that can be visualized as a focus in the cytoplasm, and contains uridine-rich small nuclear ribonucleoproteins (U snRNPs) and essential snRNP assembly factors. These U bodies are invariably found in association with P bodies.
2009-12-10 Deleted DEFINITION A ribonucleoprotein complexthat can be visualized as a focus in the cytoplasm, and contains uridine-rich small nuclear ribonucleoproteins (U snRNPs) and essential snRNP assembly factors. These U bodies are invariably found in association with P bodiesp
2009-12-06 Added SYNONYM U-body
2009-12-06 Added SYNONYM U body
2009-12-06 Added RELATION is a GO:0030529 (intracellular ribonucleoprotein complex)
Timestamp Action Category Detail
2009-12-06 Added TERM cytoplasmic U snRNP body
Timestamp Action Category Detail
2009-12-10 Added DEFINITION A ribonucleoprotein complex that can be visualized as a focus in the cytoplasm, and contains uridine-rich small nuclear ribonucleoproteins (U snRNPs) and essential snRNP assembly factors. These U bodies are invariably found in association with P bodies.
2009-12-10 Deleted DEFINITION A ribonucleoprotein complexthat can be visualized as a focus in the cytoplasm, and contains uridine-rich small nuclear ribonucleoproteins (U snRNPs) and essential snRNP assembly factors. These U bodies are invariably found in association with P bodiesp
2009-12-06 Added SYNONYM U-body
2009-12-06 Added SYNONYM U body
2009-12-06 Added DEFINITION A ribonucleoprotein complexthat can be visualized as a focus in the cytoplasm, and contains uridine-rich small nuclear ribonucleoproteins (U snRNPs) and essential snRNP assembly factors. These U bodies are invariably found in association with P bodiesp
Timestamp Action Category Detail
2019-09-12 Deleted RELATION is a GO:0044444 (obsolete cytoplasmic part)
2019-09-12 Added RELATION part of GO:0005737 (cytoplasm)
2018-03-11 Added RELATION is a GO:1990904 (ribonucleoprotein complex)
2018-03-11 Deleted RELATION is a GO:0030529 (intracellular ribonucleoprotein complex)
2009-12-06 Added RELATION is a GO:0030529 (intracellular ribonucleoprotein complex)
2009-12-06 Added RELATION is a GO:0044444 (obsolete cytoplasmic part)
Timestamp Action Category Detail
Timestamp Action Category Detail
2024-03-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
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