This term is obsolete.

GO:0071565 JSON

nBAF complex

Cellular Component

Definition (GO:0071565 GONUTS page)

A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. PMID:17640523

11,399 annotations

Ancestor Chart

Ancestor chart for GO:0071565
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Ancestor chart

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0071565 nBAF complex Only in Taxon 6072 Eumetazoa

More information on taxon constraints in GO is available here

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A0A096MJ18 10116 A0A096MJ18_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A096MK97 10116 A0A096MK97_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0G2JW23 10116 A0A0G2JW23_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0G2K8T1 10116 A0A0G2K8T1_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1B0GR71 10090 A0A1B0GR71_MOUSE GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636
NOT-qualified manual protein A0A1B0GRK6 10090 A0A1B0GRK6_MOUSE GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636
NOT-qualified manual protein A0A1D8PHF8 237561 A0A1D8PHF8_CANAL GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:8760936
NOT-qualified manual protein A0A1W2Q633 10116 A0A1W2Q633_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I5Y7L4 10116 A0A8I5Y7L4_RAT GO:0005694 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I5Y8H4 10116 A0A8I5Y8H4_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096

Cross-Ontology Relations

Relation Other Ontology ID Term
part_of CL CL:0000540 neuron

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0071565 based on ALL annotations
The top 100 of 332 co-occurring terms
Co-occurring Term PR S% #Together #Compared
nBAF complex
17,559.14 100.00 11,285 11,285
brahma complex
14,928.29 53.55 6,673 7,849
SWI/SNF complex
4,198.94 21.10 7,244 30,293
nucleosome binding
2,067.38 10.87 6,613 56,167
npBAF complex
5,131.72 4.58 581 1,988
nucleosome disassembly
829.27 2.32 494 10,460
nervous system development
332.41 1.83 4,043 213,565
positive regulation of DNA-templated transcription
257.92 1.46 6,869 467,639
XY body
2,443.15 1.27 155 1,114
nucleoplasm
211.08 1.19 7,388 614,589
Totals 86242 25793841
No co-occurrence statistics for GO:0071565 based on MANUAL annotations
The top 100 of 262 co-occurring terms
Co-occurring Term PR S% #Together #Compared
nBAF complex
5,668.81 100.00 249 249
npBAF complex
4,950.23 46.44 124 142
brahma complex
3,110.32 20.67 62 113
SWI/SNF complex
986.44 15.71 154 885
regulation of nucleotide-excision repair
1,277.48 8.91 32 142
regulation of G0 to G1 transition
1,393.18 8.58 29 118
nucleosome disassembly
726.77 7.19 35 273
bBAF complex
5,101.93 7.17 18 20
positive regulation of double-strand break repair
771.92 7.08 32 235
positive regulation of T cell differentiation
872.12 6.30 24 156
Totals 1867 55889

Change Log

Timestamp Action Category Detail
2024-03-05 Added CONSTRAINT in_taxon NCBITaxon:6072 (Eumetazoa)
2022-06-26 Deleted RELATION is a GO:0044815 (obsolete DNA packaging complex)
2022-02-17 Added RELATION is a GO:0044815 (obsolete DNA packaging complex)
2021-07-10 Deleted RELATION capable of GO:0043044 (ATP-dependent chromatin remodeling)
2021-07-10 Added RELATION capable of GO:0006338 (chromatin remodeling)
2019-09-12 Deleted RELATION is a GO:0097458 (obsolete neuron part)
2017-09-20 Added RELATION capable of GO:0043044 (ATP-dependent chromatin remodeling)
2017-09-20 Added RELATION capable of part of GO:0006357 (regulation of transcription by RNA polymerase II)
2017-09-20 Added RELATION capable of GO:0003690 (double-stranded DNA binding)
2017-09-20 Deleted RELATION is a GO:0090544 (BAF-type complex)
Timestamp Action Category Detail
2010-01-22 Added TERM nBAF complex
Timestamp Action Category Detail
2010-01-22 Added DEFINITION A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.
Timestamp Action Category Detail
2022-06-26 Deleted RELATION is a GO:0044815 (obsolete DNA packaging complex)
2022-02-17 Added RELATION is a GO:0044815 (obsolete DNA packaging complex)
2021-07-10 Deleted RELATION capable of GO:0043044 (ATP-dependent chromatin remodeling)
2021-07-10 Added RELATION capable of GO:0006338 (chromatin remodeling)
2019-09-12 Deleted RELATION is a GO:0097458 (obsolete neuron part)
2017-09-20 Added RELATION capable of GO:0043044 (ATP-dependent chromatin remodeling)
2017-09-20 Added RELATION capable of part of GO:0006357 (regulation of transcription by RNA polymerase II)
2017-09-20 Added RELATION capable of GO:0003690 (double-stranded DNA binding)
2017-09-20 Deleted RELATION is a GO:0090544 (BAF-type complex)
2017-09-20 Added RELATION is a GO:0070603 (SWI/SNF superfamily-type complex)
2013-02-17 Deleted RELATION is a GO:0070603 (SWI/SNF superfamily-type complex)
2013-02-17 Added RELATION is a GO:0090544 (BAF-type complex)
2012-12-22 Added RELATION is a GO:0097458 (obsolete neuron part)
2010-01-22 Added RELATION is a GO:0070603 (SWI/SNF superfamily-type complex)
Timestamp Action Category Detail
Timestamp Action Category Detail
2024-03-05 Added CONSTRAINT in_taxon NCBITaxon:6072 (Eumetazoa)
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