GO:0071565
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nBAF complex
Cellular Component
Definition (GO:0071565 GONUTS page)
A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. PMID:17640523
Ancestor Chart
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0071565 | nBAF complex | Only in Taxon | 6072 | Eumetazoa |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A096MJ18 | 10116 | A0A096MJ18_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A096MK97 | 10116 | A0A096MK97_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0G2JW23 | 10116 | A0A0G2JW23_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A0G2K8T1 | 10116 | A0A0G2K8T1_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A1B0GR71 | 10090 | A0A1B0GR71_MOUSE | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636 | |
NOT-qualified manual | protein | A0A1B0GRK6 | 10090 | A0A1B0GRK6_MOUSE | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636 | |
NOT-qualified manual | protein | A0A1D8PHF8 | 237561 | A0A1D8PHF8_CANAL | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:8760936 | |
NOT-qualified manual | protein | A0A1W2Q633 | 10116 | A0A1W2Q633_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5Y7L4 | 10116 | A0A8I5Y7L4_RAT | GO:0005694 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | A0A8I5Y8H4 | 10116 | A0A8I5Y8H4_RAT | GO:0005634 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
part_of | CL | CL:0000540 | neuron |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0071565 based on ALL annotations
The top 100 of 352 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
nBAF complex
|
17,715.27 | 100.00 | 11,004 | 11,004 |
brahma complex
|
15,178.87 | 54.03 | 6,535 | 7,627 |
SWI/SNF complex
|
4,231.84 | 21.12 | 7,106 | 29,747 |
nucleosome binding
|
2,113.22 | 11.01 | 6,482 | 54,339 |
npBAF complex
|
5,132.63 | 4.57 | 567 | 1,957 |
nucleosome disassembly
|
859.25 | 2.38 | 491 | 10,123 |
nervous system development
|
321.52 | 1.76 | 3,905 | 215,157 |
positive regulation of DNA-templated transcription
|
260.85 | 1.46 | 6,727 | 456,856 |
XY body
|
2,467.09 | 1.30 | 155 | 1,113 |
nucleoplasm
|
218.33 | 1.22 | 7,249 | 588,196 |
Totals | 79414 | 17736175 |
No co-occurrence statistics for GO:0071565 based on MANUAL annotations
The top 100 of 280 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
nBAF complex
|
5,925.68 | 100.00 | 218 | 218 |
npBAF complex
|
5,085.82 | 46.19 | 109 | 127 |
brahma complex
|
4,178.37 | 22.82 | 55 | 78 |
SWI/SNF complex
|
984.17 | 15.28 | 143 | 861 |
regulation of nucleotide-excision repair
|
1,335.37 | 9.76 | 32 | 142 |
regulation of G0 to G1 transition
|
1,456.31 | 9.45 | 29 | 118 |
bBAF complex
|
5,333.12 | 8.18 | 18 | 20 |
nucleosome disassembly
|
813.33 | 7.99 | 35 | 255 |
positive regulation of double-strand break repair
|
839.03 | 7.77 | 32 | 226 |
positive regulation of T cell differentiation
|
911.64 | 6.86 | 24 | 156 |
Totals | 1722 | 45792 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:6072 (Eumetazoa) |
2022-06-26 | Deleted | RELATION | is a GO:0044815 (obsolete DNA packaging complex) |
2022-02-17 | Added | RELATION | is a GO:0044815 (obsolete DNA packaging complex) |
2021-07-10 | Added | RELATION | capable of GO:0006338 (chromatin remodeling) |
2021-07-10 | Deleted | RELATION | capable of GO:0043044 (ATP-dependent chromatin remodeling) |
2019-09-12 | Deleted | RELATION | is a GO:0097458 (obsolete neuron part) |
2017-09-20 | Deleted | RELATION | is a GO:0090544 (BAF-type complex) |
2017-09-20 | Added | RELATION | capable of GO:0043044 (ATP-dependent chromatin remodeling) |
2017-09-20 | Added | RELATION | is a GO:0070603 (SWI/SNF superfamily-type complex) |
2017-09-20 | Added | RELATION | capable of part of GO:0006357 (regulation of transcription by RNA polymerase II) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2010-01-22 | Added | TERM | nBAF complex |
Timestamp | Action | Category | Detail |
---|---|---|---|
2010-01-22 | Added | DEFINITION | A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2022-06-26 | Deleted | RELATION | is a GO:0044815 (obsolete DNA packaging complex) |
2022-02-17 | Added | RELATION | is a GO:0044815 (obsolete DNA packaging complex) |
2021-07-10 | Added | RELATION | capable of GO:0006338 (chromatin remodeling) |
2021-07-10 | Deleted | RELATION | capable of GO:0043044 (ATP-dependent chromatin remodeling) |
2019-09-12 | Deleted | RELATION | is a GO:0097458 (obsolete neuron part) |
2017-09-20 | Deleted | RELATION | is a GO:0090544 (BAF-type complex) |
2017-09-20 | Added | RELATION | capable of GO:0043044 (ATP-dependent chromatin remodeling) |
2017-09-20 | Added | RELATION | is a GO:0070603 (SWI/SNF superfamily-type complex) |
2017-09-20 | Added | RELATION | capable of part of GO:0006357 (regulation of transcription by RNA polymerase II) |
2017-09-20 | Added | RELATION | capable of GO:0003690 (double-stranded DNA binding) |
2013-02-17 | Added | RELATION | is a GO:0090544 (BAF-type complex) |
2013-02-17 | Deleted | RELATION | is a GO:0070603 (SWI/SNF superfamily-type complex) |
2012-12-22 | Added | RELATION | is a GO:0097458 (obsolete neuron part) |
2010-01-22 | Added | RELATION | is a GO:0070603 (SWI/SNF superfamily-type complex) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:6072 (Eumetazoa) |
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