This term is obsolete.

GO:0071565 JSON

nBAF complex

Cellular Component

Definition (GO:0071565 GONUTS page)

A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. PMID:17640523

11,103 annotations

Ancestor Chart

Ancestor chart for GO:0071565
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Ancestor chart

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0071565 nBAF complex Only in Taxon 6072 Eumetazoa

More information on taxon constraints in GO is available here

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A0A096MJ18 10116 A0A096MJ18_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A096MK97 10116 A0A096MK97_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0G2JW23 10116 A0A0G2JW23_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0G2K8T1 10116 A0A0G2K8T1_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1B0GR71 10090 A0A1B0GR71_MOUSE GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636
NOT-qualified manual protein A0A1B0GRK6 10090 A0A1B0GRK6_MOUSE GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:16904636
NOT-qualified manual protein A0A1D8PHF8 237561 A0A1D8PHF8_CANAL GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:8760936
NOT-qualified manual protein A0A1W2Q633 10116 A0A1W2Q633_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I5Y7L4 10116 A0A8I5Y7L4_RAT GO:0005694 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A8I5Y8H4 10116 A0A8I5Y8H4_RAT GO:0005634 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096

Cross-Ontology Relations

Relation Other Ontology ID Term
part_of CL CL:0000540 neuron

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0071565 based on ALL annotations
The top 100 of 352 co-occurring terms
Co-occurring Term PR S% #Together #Compared
nBAF complex
17,715.27 100.00 11,004 11,004
brahma complex
15,178.87 54.03 6,535 7,627
SWI/SNF complex
4,231.84 21.12 7,106 29,747
nucleosome binding
2,113.22 11.01 6,482 54,339
npBAF complex
5,132.63 4.57 567 1,957
nucleosome disassembly
859.25 2.38 491 10,123
nervous system development
321.52 1.76 3,905 215,157
positive regulation of DNA-templated transcription
260.85 1.46 6,727 456,856
XY body
2,467.09 1.30 155 1,113
nucleoplasm
218.33 1.22 7,249 588,196
Totals 79414 17736175
No co-occurrence statistics for GO:0071565 based on MANUAL annotations
The top 100 of 280 co-occurring terms
Co-occurring Term PR S% #Together #Compared
nBAF complex
5,925.68 100.00 218 218
npBAF complex
5,085.82 46.19 109 127
brahma complex
4,178.37 22.82 55 78
SWI/SNF complex
984.17 15.28 143 861
regulation of nucleotide-excision repair
1,335.37 9.76 32 142
regulation of G0 to G1 transition
1,456.31 9.45 29 118
bBAF complex
5,333.12 8.18 18 20
nucleosome disassembly
813.33 7.99 35 255
positive regulation of double-strand break repair
839.03 7.77 32 226
positive regulation of T cell differentiation
911.64 6.86 24 156
Totals 1722 45792

Change Log

Timestamp Action Category Detail
2024-03-05 Added CONSTRAINT in_taxon NCBITaxon:6072 (Eumetazoa)
2022-06-26 Deleted RELATION is a GO:0044815 (obsolete DNA packaging complex)
2022-02-17 Added RELATION is a GO:0044815 (obsolete DNA packaging complex)
2021-07-10 Added RELATION capable of GO:0006338 (chromatin remodeling)
2021-07-10 Deleted RELATION capable of GO:0043044 (ATP-dependent chromatin remodeling)
2019-09-12 Deleted RELATION is a GO:0097458 (obsolete neuron part)
2017-09-20 Deleted RELATION is a GO:0090544 (BAF-type complex)
2017-09-20 Added RELATION capable of GO:0043044 (ATP-dependent chromatin remodeling)
2017-09-20 Added RELATION is a GO:0070603 (SWI/SNF superfamily-type complex)
2017-09-20 Added RELATION capable of part of GO:0006357 (regulation of transcription by RNA polymerase II)
Timestamp Action Category Detail
2010-01-22 Added TERM nBAF complex
Timestamp Action Category Detail
2010-01-22 Added DEFINITION A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.
Timestamp Action Category Detail
2022-06-26 Deleted RELATION is a GO:0044815 (obsolete DNA packaging complex)
2022-02-17 Added RELATION is a GO:0044815 (obsolete DNA packaging complex)
2021-07-10 Added RELATION capable of GO:0006338 (chromatin remodeling)
2021-07-10 Deleted RELATION capable of GO:0043044 (ATP-dependent chromatin remodeling)
2019-09-12 Deleted RELATION is a GO:0097458 (obsolete neuron part)
2017-09-20 Deleted RELATION is a GO:0090544 (BAF-type complex)
2017-09-20 Added RELATION capable of GO:0043044 (ATP-dependent chromatin remodeling)
2017-09-20 Added RELATION is a GO:0070603 (SWI/SNF superfamily-type complex)
2017-09-20 Added RELATION capable of part of GO:0006357 (regulation of transcription by RNA polymerase II)
2017-09-20 Added RELATION capable of GO:0003690 (double-stranded DNA binding)
2013-02-17 Added RELATION is a GO:0090544 (BAF-type complex)
2013-02-17 Deleted RELATION is a GO:0070603 (SWI/SNF superfamily-type complex)
2012-12-22 Added RELATION is a GO:0097458 (obsolete neuron part)
2010-01-22 Added RELATION is a GO:0070603 (SWI/SNF superfamily-type complex)
Timestamp Action Category Detail
Timestamp Action Category Detail
2024-03-05 Added CONSTRAINT in_taxon NCBITaxon:6072 (Eumetazoa)
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