This term is obsolete.

GO:0071820 JSON

N-box binding

Molecular Function

Definition (GO:0071820 GONUTS page)

Binding to an N-box, a DNA motif with the consensus sequence CACNAG that is found in the promoters of genes expressed preferentially at synapses. PMID:11498047

Acknowledgement

This term was created by the GO Consortium with support from: KRUK image

110 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
N-box promoter binding exact
N box binding exact

Ancestor Chart

Ancestor chart for GO:0071820
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Ancestor chart

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Binding term considerations Link
Considerations when annotating from ChiP assay results Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
IEA Review protein P40999 284812 PMT1M_SCHPO GO:0003677 To remove over-annotation from InterPro entries IPR001525 and IPR018117; for this particular C5-methyltransferase family member, there is a Ser residue in the active site that may be responsible. Reported by InterPro on 19-10-2012
NOT-qualified manual protein A0A0G2JVM9 10116 A0A0G2JVM9_RAT GO:0000978 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A0G2K0G0 10116 A0A0G2K0G0_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A0G2K6Q9 10116 A0A0G2K6Q9_RAT GO:0003690 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1B0GWQ8 10116 A0A1B0GWQ8_RAT GO:0003677 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein A0A1D8PIK2 237561 A0A1D8PIK2_CANAL GO:0000976 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:20008550
NOT-qualified manual protein A0A287AGK9 9823 A0A287AGK9_PIG GO:0000978 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A2I2ZSU6 9595 A0A2I2ZSU6_GORGO GO:0000978 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A337SMT8 9685 A0A337SMT8_FELCA GO:0000978 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033
NOT-qualified manual protein A0A3Q2H1G8 9796 A0A3Q2H1G8_HORSE GO:0000978 1 NOT-qualified manual annotation exists with evidence code ECO:0000318 from this reference: GO_REF:0000033

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0071820 based on ALL annotations
The top 100 of 143 co-occurring terms
Co-occurring Term PR S% #Together #Compared
N-box binding
2,073,816.90 100.00 94 94
negative regulation of stomach neuroendocrine cell differentiation
2,073,816.90 96.81 91 91
renal interstitial fibroblast development
2,073,816.90 96.81 91 91
negative regulation of cell fate determination
2,073,816.90 96.81 91 91
trochlear nerve development
1,965,805.60 91.92 91 96
positive regulation of mitotic cell cycle, embryonic
1,357,678.60 64.08 91 139
negative regulation of pancreatic A cell differentiation
1,328,995.20 62.76 91 142
negative regulation of inner ear receptor cell differentiation
1,179,483.40 55.83 91 160
stomach neuroendocrine cell differentiation
1,103,610.10 52.30 91 171
negative regulation of pro-B cell differentiation
1,020,621.90 49.21 94 191
Totals 8045 492912
No co-occurrence statistics for GO:0071820 based on MANUAL annotations
The top 100 of 138 co-occurring terms
Co-occurring Term PR S% #Together #Compared
N-box binding
117,436.27 100.00 11 11
negative regulation of forebrain neuron differentiation
52,193.90 25.00 4 9
negative regulation of pro-B cell differentiation
42,704.10 22.22 4 11
negative regulation of stomach neuroendocrine cell differentiation
117,436.27 18.18 2 2
renal interstitial fibroblast development
117,436.27 18.18 2 2
negative regulation of cell fate determination
117,436.27 18.18 2 2
stomach neuroendocrine cell differentiation
58,718.14 15.38 2 4
negative regulation of pancreatic A cell differentiation
58,718.14 15.38 2 4
negative regulation of inner ear receptor cell differentiation
58,718.14 15.38 2 4
ascending aorta morphogenesis
27,100.68 14.29 3 13
Totals 275 16080

Change Log

Timestamp Action Category Detail
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with an N-box, a DNA motif with the consensus sequence CACNAG that is found in the promoters of genes expressed preferentially at synapses.
2021-05-24 Added DEFINITION Binding to an N-box, a DNA motif with the consensus sequence CACNAG that is found in the promoters of genes expressed preferentially at synapses.
2017-11-25 Deleted RELATION is a GO:0000976 (transcription cis-regulatory region binding)
2017-11-25 Added RELATION is a GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding)
2017-11-03 Deleted RELATION is a GO:0044212 (transcription regulatory region DNA binding)
2017-11-03 Added RELATION is a GO:0000976 (transcription cis-regulatory region binding)
2011-05-13 Deleted RELATION is a GO:0010843 (obsolete promoter binding)
2011-05-13 Added RELATION is a GO:0044212 (transcription regulatory region DNA binding)
2010-09-09 Added RELATION is a GO:0010843 (obsolete promoter binding)
2010-09-09 Added SYNONYM N box binding
Timestamp Action Category Detail
2010-09-09 Added TERM N-box binding
Timestamp Action Category Detail
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with an N-box, a DNA motif with the consensus sequence CACNAG that is found in the promoters of genes expressed preferentially at synapses.
2021-05-24 Added DEFINITION Binding to an N-box, a DNA motif with the consensus sequence CACNAG that is found in the promoters of genes expressed preferentially at synapses.
2010-09-09 Added SYNONYM N box binding
2010-09-09 Added SYNONYM N-box promoter binding
2010-09-09 Added DEFINITION Interacting selectively and non-covalently with an N-box, a DNA motif with the consensus sequence CACNAG that is found in the promoters of genes expressed preferentially at synapses.
Timestamp Action Category Detail
2017-11-25 Deleted RELATION is a GO:0000976 (transcription cis-regulatory region binding)
2017-11-25 Added RELATION is a GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding)
2017-11-03 Deleted RELATION is a GO:0044212 (transcription regulatory region DNA binding)
2017-11-03 Added RELATION is a GO:0000976 (transcription cis-regulatory region binding)
2011-05-13 Deleted RELATION is a GO:0010843 (obsolete promoter binding)
2011-05-13 Added RELATION is a GO:0044212 (transcription regulatory region DNA binding)
2010-09-09 Added RELATION is a GO:0010843 (obsolete promoter binding)
Timestamp Action Category Detail
Timestamp Action Category Detail
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