GO:0090177
JSON
establishment of planar polarity involved in neural tube closure
Biological Process
Definition (GO:0090177 GONUTS page)
Coordinated organization of groups of cells in the plane of an epithelium that contributes to the closure of the neural tube.
Ancestor Chart
Ancestor chart for GO:0090177
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0090177
| Child Term | Relationship to GO:0090177 |
|---|---|
|
regulation of establishment of planar polarity involved in neural tube closure
|
regulates |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
| Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
|---|---|---|---|---|---|
| GO:0090177 | establishment of planar polarity involved in neural tube closure | Only in Taxon | 7711 | Chordata |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
| Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
|---|---|---|---|---|---|---|---|
| NOT-qualified manual | protein | A0A0G2JVK0 | 10116 | A0A0G2JVK0_RAT | GO:0002009 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
| NOT-qualified manual | protein | A0A0G2K7N2 | 10116 | A0A0G2K7N2_RAT | GO:0002009 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
| NOT-qualified manual | protein | A6JP87 | 10116 | A6JP87_RAT | GO:0002009 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
| NOT-qualified manual | protein | F7FI57 | 10116 | F7FI57_RAT | GO:0002009 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
| NOT-qualified manual | protein | O35740 | 10090 | CITE2_MOUSE | GO:0002009 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:17615577 | |
| NOT-qualified manual | protein | P97769 | 10090 | CITE1_MOUSE | GO:0002009 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:17615577 | |
| NOT-qualified manual | protein | Q4V8P1 | 10116 | Q4V8P1_RAT | GO:0002009 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
| NOT-qualified manual | protein | Q99MA1 | 10116 | Q99MA1_RAT | GO:0002009 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
| NOT-qualified manual | protein | Q9DDW4 | 9031 | Q9DDW4_CHICK | GO:0002009 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000247 from this reference: PMID:11044621 | |
| NOT-qualified manual | protein | Q9Z1S6 | 10116 | Q9Z1S6_RAT | GO:0002009 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0090177 based on ALL annotations
The top 80 of 80 co-occurring terms
| Co-occurring Term | PR | S% | #Together | #Compared |
|---|---|---|---|---|
|
establishment of planar polarity involved in neural tube closure
|
2,085,840.60 | 100.00 | 95 | 95 |
|
ossification involved in bone remodeling
|
1,026,366.00 | 48.69 | 93 | 189 |
|
osteoblast proliferation
|
207,468.64 | 9.93 | 93 | 935 |
|
Wnt signaling pathway, planar cell polarity pathway
|
141,843.14 | 6.80 | 95 | 1,397 |
|
cochlea morphogenesis
|
112,332.70 | 5.39 | 95 | 1,764 |
|
positive regulation of osteoblast proliferation
|
108,979.32 | 5.22 | 93 | 1,780 |
|
sarcoplasm
|
80,224.64 | 3.84 | 93 | 2,418 |
|
cell migration involved in kidney development
|
1,390,560.50 | 2.08 | 2 | 3 |
|
inner ear receptor cell stereocilium organization
|
39,480.95 | 1.89 | 95 | 5,019 |
|
positive regulation of osteoblast differentiation
|
24,443.45 | 1.17 | 93 | 7,936 |
| Totals | 1483 | 106784981 | ||
No co-occurrence statistics for GO:0090177 based on MANUAL annotations
The top 76 of 76 co-occurring terms
| Co-occurring Term | PR | S% | #Together | #Compared |
|---|---|---|---|---|
|
establishment of planar polarity involved in neural tube closure
|
352,883.25 | 100.00 | 4 | 4 |
|
cell migration involved in kidney development
|
235,255.50 | 40.00 | 2 | 3 |
|
orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis
|
117,627.75 | 25.00 | 2 | 6 |
|
planar dichotomous subdivision of terminal units involved in lung branching morphogenesis
|
117,627.75 | 25.00 | 2 | 6 |
|
lateral sprouting involved in lung morphogenesis
|
117,627.75 | 25.00 | 2 | 6 |
|
convergent extension involved in neural plate elongation
|
78,418.50 | 18.18 | 2 | 9 |
|
ossification involved in bone remodeling
|
78,418.50 | 18.18 | 2 | 9 |
|
dopaminergic neuron axon guidance
|
58,813.88 | 14.29 | 2 | 12 |
|
establishment of body hair planar orientation
|
54,289.73 | 13.33 | 2 | 13 |
|
serotonergic neuron axon guidance
|
50,411.90 | 12.50 | 2 | 14 |
| Totals | 149 | 597776 | ||
Change Log
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| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2024-03-22 | Added | CONSTRAINT | in_taxon NCBITaxon:7711 (Chordata) |
| 2024-03-22 | Deleted | CONSTRAINT | in_taxon NCBITaxon:7742 (Vertebrata) |
| 2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:7742 (Vertebrata) |
| 2011-06-05 | Deleted | RELATION | is a GO:0001736 (establishment of planar polarity) |
| 2010-03-19 | Added | RELATION | is a GO:0048598 (embryonic morphogenesis) |
| 2009-12-15 | Added | TERM | establishment of planar polarity involved in neural tube closure |
| 2009-12-15 | Added | RELATION | part of GO:0001843 (neural tube closure) |
| 2009-12-15 | Added | DEFINITION | Coordinated organization of groups of cells in the plane of an epithelium that contributes to the closure of the neural tube. |
| 2009-12-15 | Added | RELATION | is a GO:0042249 (establishment of planar polarity of embryonic epithelium) |
| 2009-12-15 | Added | RELATION | is a GO:0001736 (establishment of planar polarity) |
| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2009-12-15 | Added | TERM | establishment of planar polarity involved in neural tube closure |
| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2009-12-15 | Added | DEFINITION | Coordinated organization of groups of cells in the plane of an epithelium that contributes to the closure of the neural tube. |
| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2011-06-05 | Deleted | RELATION | is a GO:0001736 (establishment of planar polarity) |
| 2010-03-19 | Added | RELATION | is a GO:0048598 (embryonic morphogenesis) |
| 2009-12-15 | Added | RELATION | part of GO:0001843 (neural tube closure) |
| 2009-12-15 | Added | RELATION | is a GO:0042249 (establishment of planar polarity of embryonic epithelium) |
| 2009-12-15 | Added | RELATION | is a GO:0001736 (establishment of planar polarity) |
| Timestamp | Action | Category | Detail |
|---|
| Timestamp | Action | Category | Detail |
|---|---|---|---|
| 2024-03-22 | Added | CONSTRAINT | in_taxon NCBITaxon:7711 (Chordata) |
| 2024-03-22 | Deleted | CONSTRAINT | in_taxon NCBITaxon:7742 (Vertebrata) |
| 2024-03-05 | Added | CONSTRAINT | in_taxon NCBITaxon:7742 (Vertebrata) |
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