This term is obsolete.

GO:0090387 JSON

phagolysosome assembly involved in apoptotic cell clearance

Biological Process

Definition (GO:0090387 GONUTS page)

The process in which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance.

885 annotations

Ancestor Chart

Ancestor chart for GO:0090387
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Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0090387

Child Term Relationship to
GO:0090387
phagosome-lysosome fusion involved in apoptotic cell clearance
part_of
phagosome-lysosome docking involved in apoptotic cell clearance
part_of

Taxon Constraints

The use of this term should conform to the following taxon constraints:

Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GO:0090387 phagolysosome assembly involved in apoptotic cell clearance Never in Taxon 4751 Fungi
GO:0090387 phagolysosome assembly involved in apoptotic cell clearance Only in Taxon 131567 cellular organisms

More information on taxon constraints in GO is available here

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein A0A9K3Y7P9 10116 A0A9K3Y7P9_RAT GO:0006897 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein B2RZ46 10116 B2RZ46_RAT GO:0006897 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein O35509 10116 RB11B_RAT GO:0006897 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein P35292 10090 RAB17_MOUSE GO:0006897 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:9624171
NOT-qualified manual protein P46638 10090 RB11B_MOUSE GO:0006897 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:10942597
NOT-qualified manual protein Q0WQ75 3702 VPS51_ARATH GO:0006897 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:24757006
NOT-qualified manual protein Q6AYK2 10116 JMJD6_RAT GO:0043277 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein Q8MQJ7 7227 Q8MQJ7_DROME GO:0006897 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:23406899
NOT-qualified manual protein Q9VU14 7227 Q9VU14_DROME GO:0006897 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:23406899

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0090387 based on ALL annotations
The top 71 of 71 co-occurring terms
Co-occurring Term PR S% #Together #Compared
phagolysosome assembly involved in apoptotic cell clearance
5,355,537.00 100.00 37 37
phagosome maturation involved in apoptotic cell clearance
2,052,955.90 31.08 23 60
phagosome acidification involved in apoptotic cell clearance
5,355,537.00 21.62 8 8
protein localization to postsynaptic membrane
181,105.11 2.95 7 207
body morphogenesis
115,172.83 1.94 6 279
oocyte growth
107,110.73 1.81 6 300
phagosome-lysosome fusion involved in apoptotic cell clearance
89,686.02 1.63 14 836
lipid droplet disassembly
83,390.71 1.49 9 578
early phagosome
78,757.90 1.44 14 952
mechanosensory behavior
76,507.67 1.35 7 490
Totals 522 130496298
No co-occurrence statistics for GO:0090387 based on MANUAL annotations
The top 60 of 60 co-occurring terms
Co-occurring Term PR S% #Together #Compared
phagolysosome assembly involved in apoptotic cell clearance
201,647.58 100.00 7 7
phagosome maturation involved in apoptotic cell clearance
89,621.15 33.33 4 9
phagosome acidification involved in apoptotic cell clearance
201,647.58 28.57 2 2
phagosome-lysosome fusion involved in apoptotic cell clearance
30,247.14 12.50 3 20
protein localization to postsynaptic membrane
13,443.17 4.76 1 15
dense core granule maturation
11,861.62 4.35 1 17
regulation of locomotion involved in locomotory behavior
10,082.38 3.85 1 20
early phagosome
6,301.49 3.00 3 96
phagolysosome assembly
5,601.32 2.60 2 72
lipid droplet disassembly
5,761.36 2.44 1 35
Totals 99 543866

Change Log

Timestamp Action Category Detail
2024-09-17 Added RELATION part of GO:0043277 (apoptotic cell clearance)
2024-09-11 Deleted RELATION part of GO:0043277 (apoptotic cell clearance)
2024-09-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
2024-09-05 Added CONSTRAINT never_in_taxon NCBITaxon:4751 (Fungi)
2015-04-24 Added RELATION part of GO:0043277 (apoptotic cell clearance)
2013-02-02 Deleted RELATION part of GO:0043277 (apoptotic cell clearance)
2012-10-29 Added RELATION part of GO:0043277 (apoptotic cell clearance)
2010-12-17 Deleted DEFINITION The process by which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance.
2010-12-17 Added DEFINITION The process in which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance.
2010-10-29 Added RELATION is a GO:0001845 (phagolysosome assembly)
Timestamp Action Category Detail
2010-10-29 Added TERM phagolysosome assembly involved in apoptotic cell clearance
Timestamp Action Category Detail
2010-12-17 Deleted DEFINITION The process by which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance.
2010-12-17 Added DEFINITION The process in which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance.
2010-10-29 Added DEFINITION The process by which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance.
Timestamp Action Category Detail
2024-09-17 Added RELATION part of GO:0043277 (apoptotic cell clearance)
2024-09-11 Deleted RELATION part of GO:0043277 (apoptotic cell clearance)
2015-04-24 Added RELATION part of GO:0043277 (apoptotic cell clearance)
2013-02-02 Deleted RELATION part of GO:0043277 (apoptotic cell clearance)
2012-10-29 Added RELATION part of GO:0043277 (apoptotic cell clearance)
2010-10-29 Added RELATION is a GO:0001845 (phagolysosome assembly)
2010-10-29 Added RELATION part of GO:0090386 (phagosome maturation involved in apoptotic cell clearance)
Timestamp Action Category Detail
Timestamp Action Category Detail
2024-09-05 Added CONSTRAINT in_taxon NCBITaxon:131567 (cellular organisms)
2024-09-05 Added CONSTRAINT never_in_taxon NCBITaxon:4751 (Fungi)
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