GO:0090387
JSON
phagolysosome assembly involved in apoptotic cell clearance
Biological Process
Definition (GO:0090387 GONUTS page)
The process in which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance.
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0090387
Child Term | Relationship to GO:0090387 |
---|---|
phagosome-lysosome fusion involved in apoptotic cell clearance
|
part_of |
phagosome-lysosome docking involved in apoptotic cell clearance
|
part_of |
Taxon Constraints
The use of this term should conform to the following taxon constraints:
Ancestor GO ID | Ancestor GO Term Name | Relationship | Taxon ID | Taxon | Reference(s) |
---|---|---|---|---|---|
GO:0090387 | phagolysosome assembly involved in apoptotic cell clearance | Never in Taxon | 4751 | Fungi | |
GO:0090387 | phagolysosome assembly involved in apoptotic cell clearance | Only in Taxon | 131567 | cellular organisms |
More information on taxon constraints in GO is available here
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | A0A9K3Y7P9 | 10116 | A0A9K3Y7P9_RAT | GO:0006897 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | B2RZ46 | 10116 | B2RZ46_RAT | GO:0006897 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | O35509 | 10116 | RB11B_RAT | GO:0006897 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | P35292 | 10090 | RAB17_MOUSE | GO:0006897 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:9624171 | |
NOT-qualified manual | protein | P46638 | 10090 | RB11B_MOUSE | GO:0006897 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:10942597 | |
NOT-qualified manual | protein | Q0WQ75 | 3702 | VPS51_ARATH | GO:0006897 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:24757006 | |
NOT-qualified manual | protein | Q6AYK2 | 10116 | JMJD6_RAT | GO:0043277 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | Q8MQJ7 | 7227 | Q8MQJ7_DROME | GO:0006897 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:23406899 | |
NOT-qualified manual | protein | Q9VU14 | 7227 | Q9VU14_DROME | GO:0006897 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000315 from this reference: PMID:23406899 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0090387 based on ALL annotations
The top 71 of 71 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
phagolysosome assembly involved in apoptotic cell clearance
|
5,355,537.00 | 100.00 | 37 | 37 |
phagosome maturation involved in apoptotic cell clearance
|
2,052,955.90 | 31.08 | 23 | 60 |
phagosome acidification involved in apoptotic cell clearance
|
5,355,537.00 | 21.62 | 8 | 8 |
protein localization to postsynaptic membrane
|
181,105.11 | 2.95 | 7 | 207 |
body morphogenesis
|
115,172.83 | 1.94 | 6 | 279 |
oocyte growth
|
107,110.73 | 1.81 | 6 | 300 |
phagosome-lysosome fusion involved in apoptotic cell clearance
|
89,686.02 | 1.63 | 14 | 836 |
lipid droplet disassembly
|
83,390.71 | 1.49 | 9 | 578 |
early phagosome
|
78,757.90 | 1.44 | 14 | 952 |
mechanosensory behavior
|
76,507.67 | 1.35 | 7 | 490 |
Totals | 522 | 130496298 |
No co-occurrence statistics for GO:0090387 based on MANUAL annotations
The top 60 of 60 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
phagolysosome assembly involved in apoptotic cell clearance
|
201,647.58 | 100.00 | 7 | 7 |
phagosome maturation involved in apoptotic cell clearance
|
89,621.15 | 33.33 | 4 | 9 |
phagosome acidification involved in apoptotic cell clearance
|
201,647.58 | 28.57 | 2 | 2 |
phagosome-lysosome fusion involved in apoptotic cell clearance
|
30,247.14 | 12.50 | 3 | 20 |
protein localization to postsynaptic membrane
|
13,443.17 | 4.76 | 1 | 15 |
dense core granule maturation
|
11,861.62 | 4.35 | 1 | 17 |
regulation of locomotion involved in locomotory behavior
|
10,082.38 | 3.85 | 1 | 20 |
early phagosome
|
6,301.49 | 3.00 | 3 | 96 |
phagolysosome assembly
|
5,601.32 | 2.60 | 2 | 72 |
lipid droplet disassembly
|
5,761.36 | 2.44 | 1 | 35 |
Totals | 99 | 543866 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-17 | Added | RELATION | part of GO:0043277 (apoptotic cell clearance) |
2024-09-11 | Deleted | RELATION | part of GO:0043277 (apoptotic cell clearance) |
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2024-09-05 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
2015-04-24 | Added | RELATION | part of GO:0043277 (apoptotic cell clearance) |
2013-02-02 | Deleted | RELATION | part of GO:0043277 (apoptotic cell clearance) |
2012-10-29 | Added | RELATION | part of GO:0043277 (apoptotic cell clearance) |
2010-12-17 | Deleted | DEFINITION | The process by which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance. |
2010-12-17 | Added | DEFINITION | The process in which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance. |
2010-10-29 | Added | RELATION | is a GO:0001845 (phagolysosome assembly) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2010-10-29 | Added | TERM | phagolysosome assembly involved in apoptotic cell clearance |
Timestamp | Action | Category | Detail |
---|---|---|---|
2010-12-17 | Deleted | DEFINITION | The process by which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance. |
2010-12-17 | Added | DEFINITION | The process in which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance. |
2010-10-29 | Added | DEFINITION | The process by which a phagosome, a vesicle formed by phagocytosis, fuses with a lysosome as a part of apoptotic cell clearance. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-17 | Added | RELATION | part of GO:0043277 (apoptotic cell clearance) |
2024-09-11 | Deleted | RELATION | part of GO:0043277 (apoptotic cell clearance) |
2015-04-24 | Added | RELATION | part of GO:0043277 (apoptotic cell clearance) |
2013-02-02 | Deleted | RELATION | part of GO:0043277 (apoptotic cell clearance) |
2012-10-29 | Added | RELATION | part of GO:0043277 (apoptotic cell clearance) |
2010-10-29 | Added | RELATION | is a GO:0001845 (phagolysosome assembly) |
2010-10-29 | Added | RELATION | part of GO:0090386 (phagosome maturation involved in apoptotic cell clearance) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-09-05 | Added | CONSTRAINT | in_taxon NCBITaxon:131567 (cellular organisms) |
2024-09-05 | Added | CONSTRAINT | never_in_taxon NCBITaxon:4751 (Fungi) |
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