This term is obsolete.

GO:0120114 JSON

Sm-like protein family complex

Cellular Component

Definition (GO:0120114 GONUTS page)

A protein complex containing members of the Like-Sm family of proteins, which includes both the Sm proteins and the Lsm proteins, and which generally form hexameric or heptameric ring structures which bind to RNA. While some of these ring complexes may form independently of RNA, many only form in association with their target RNA. In addition to Lsm-family proteins, many of these complexes contain additional protein members. Members of this family of complexes include the snRNPs which comprise the majority of the spliceosome. Others are involved in the 5' to 3' degradation pathways of mRNAs in the cytoplasm and of unspliced transcripts in the nucleus, as well as other diverse roles. PMID:19121818 PMID:27627834

661,159 annotations

Ancestor Chart

Ancestor chart for GO:0120114
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Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0120114

Child Term Relationship to
GO:0120114
pICln-Sm protein complex
is_a
Lsm1-7-Pat1 complex
is_a
small nuclear ribonucleoprotein complex
is_a
Lsm2-8 complex
is_a
SMN-Sm protein complex
is_a
SMN-Gemin2 complex
is_a
SMN complex
is_a

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0120114 based on ALL annotations
The top 100 of 120 co-occurring terms
Co-occurring Term PR S% #Together #Compared
Sm-like protein family complex
15,152.65 100.00 12,865 12,865
pICln-Sm protein complex
6,468.03 20.32 3,595 8,422
sno(s)RNA-containing ribonucleoprotein complex
4,161.96 16.00 3,563 12,972
spliceosomal snRNP assembly
1,382.59 7.65 4,131 45,274
SMN-Sm protein complex
2,168.79 4.94 902 6,302
U1 snRNP
762.52 4.45 3,572 70,982
U6 snRNP
662.19 4.17 6,084 139,218
spliceosomal complex
622.56 4.07 10,610 258,238
mRNA splicing, via spliceosome
558.53 3.68 11,940 323,929
maturation of SSU-rRNA
611.55 3.63 3,399 84,219
Totals 137323 74231588
No co-occurrence statistics for GO:0120114 based on MANUAL annotations
The top 12 of 12 co-occurring terms
Co-occurring Term PR S% #Together #Compared
Sm-like protein family complex
44,544.79 100.00 29 29
Gemini of coiled bodies
4,049.53 6.74 6 66
spliceosomal snRNP assembly
908.44 2.04 29 1,422
SMN complex
676.39 1.45 7 461
SMN-Sm protein complex
531.35 1.14 6 503
nuclear body
157.74 0.35 5 1,412
mRNA splicing, via spliceosome
4.98 0.01 1 8,942
nucleoplasm
2.61 0.01 1 17,081
cytoplasm
1.24 0.00 5 179,389
protein binding
1.07 0.00 1 41,817
Totals 93 527615

Change Log

Timestamp Action Category Detail
2017-11-08 Added RELATION is a GO:0032991 (protein-containing complex)
2017-11-08 Added TERM Sm-like protein family complex
2017-11-08 Added DEFINITION A protein complex containing members of the Like-Sm family of proteins, which includes both the Sm proteins and the Lsm proteins, and which generally form hexameric or heptameric ring structures which bind to RNA. While some of these ring complexes may form independently of RNA, many only form in association with their target RNA. In addition to Lsm-family proteins, many of these complexes contain additional protein members. Members of this family of complexes include the snRNPs which comprise the majority of the spliceosome. Others are involved in the 5' to 3' degradation pathways of mRNAs in the cytoplasm and of unspliced transcripts in the nucleus, as well as other diverse roles.
Timestamp Action Category Detail
2017-11-08 Added TERM Sm-like protein family complex
Timestamp Action Category Detail
2017-11-08 Added DEFINITION A protein complex containing members of the Like-Sm family of proteins, which includes both the Sm proteins and the Lsm proteins, and which generally form hexameric or heptameric ring structures which bind to RNA. While some of these ring complexes may form independently of RNA, many only form in association with their target RNA. In addition to Lsm-family proteins, many of these complexes contain additional protein members. Members of this family of complexes include the snRNPs which comprise the majority of the spliceosome. Others are involved in the 5' to 3' degradation pathways of mRNAs in the cytoplasm and of unspliced transcripts in the nucleus, as well as other diverse roles.
Timestamp Action Category Detail
2017-11-08 Added RELATION is a GO:0032991 (protein-containing complex)
Timestamp Action Category Detail
Timestamp Action Category Detail
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