GO:0120114
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Sm-like protein family complex
Cellular Component
Definition (GO:0120114 GONUTS page)
A protein complex containing members of the Like-Sm family of proteins, which includes both the Sm proteins and the Lsm proteins, and which generally form hexameric or heptameric ring structures which bind to RNA. While some of these ring complexes may form independently of RNA, many only form in association with their target RNA. In addition to Lsm-family proteins, many of these complexes contain additional protein members. Members of this family of complexes include the snRNPs which comprise the majority of the spliceosome. Others are involved in the 5' to 3' degradation pathways of mRNAs in the cytoplasm and of unspliced transcripts in the nucleus, as well as other diverse roles. PMID:19121818 PMID:27627834
Ancestor Chart
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0120114
Child Term | Relationship to GO:0120114 |
---|---|
pICln-Sm protein complex
|
is_a |
Lsm1-7-Pat1 complex
|
is_a |
small nuclear ribonucleoprotein complex
|
is_a |
Lsm2-8 complex
|
is_a |
SMN-Sm protein complex
|
is_a |
SMN-Gemin2 complex
|
is_a |
SMN complex
|
is_a |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0120114 based on ALL annotations
The top 100 of 120 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
Sm-like protein family complex
|
15,152.65 | 100.00 | 12,865 | 12,865 |
pICln-Sm protein complex
|
6,468.03 | 20.32 | 3,595 | 8,422 |
sno(s)RNA-containing ribonucleoprotein complex
|
4,161.96 | 16.00 | 3,563 | 12,972 |
spliceosomal snRNP assembly
|
1,382.59 | 7.65 | 4,131 | 45,274 |
SMN-Sm protein complex
|
2,168.79 | 4.94 | 902 | 6,302 |
U1 snRNP
|
762.52 | 4.45 | 3,572 | 70,982 |
U6 snRNP
|
662.19 | 4.17 | 6,084 | 139,218 |
spliceosomal complex
|
622.56 | 4.07 | 10,610 | 258,238 |
mRNA splicing, via spliceosome
|
558.53 | 3.68 | 11,940 | 323,929 |
maturation of SSU-rRNA
|
611.55 | 3.63 | 3,399 | 84,219 |
Totals | 137323 | 74231588 |
No co-occurrence statistics for GO:0120114 based on MANUAL annotations
The top 12 of 12 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
Sm-like protein family complex
|
44,544.79 | 100.00 | 29 | 29 |
Gemini of coiled bodies
|
4,049.53 | 6.74 | 6 | 66 |
spliceosomal snRNP assembly
|
908.44 | 2.04 | 29 | 1,422 |
SMN complex
|
676.39 | 1.45 | 7 | 461 |
SMN-Sm protein complex
|
531.35 | 1.14 | 6 | 503 |
nuclear body
|
157.74 | 0.35 | 5 | 1,412 |
mRNA splicing, via spliceosome
|
4.98 | 0.01 | 1 | 8,942 |
nucleoplasm
|
2.61 | 0.01 | 1 | 17,081 |
cytoplasm
|
1.24 | 0.00 | 5 | 179,389 |
protein binding
|
1.07 | 0.00 | 1 | 41,817 |
Totals | 93 | 527615 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2017-11-08 | Added | RELATION | is a GO:0032991 (protein-containing complex) |
2017-11-08 | Added | TERM | Sm-like protein family complex |
2017-11-08 | Added | DEFINITION | A protein complex containing members of the Like-Sm family of proteins, which includes both the Sm proteins and the Lsm proteins, and which generally form hexameric or heptameric ring structures which bind to RNA. While some of these ring complexes may form independently of RNA, many only form in association with their target RNA. In addition to Lsm-family proteins, many of these complexes contain additional protein members. Members of this family of complexes include the snRNPs which comprise the majority of the spliceosome. Others are involved in the 5' to 3' degradation pathways of mRNAs in the cytoplasm and of unspliced transcripts in the nucleus, as well as other diverse roles. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2017-11-08 | Added | TERM | Sm-like protein family complex |
Timestamp | Action | Category | Detail |
---|---|---|---|
2017-11-08 | Added | DEFINITION | A protein complex containing members of the Like-Sm family of proteins, which includes both the Sm proteins and the Lsm proteins, and which generally form hexameric or heptameric ring structures which bind to RNA. While some of these ring complexes may form independently of RNA, many only form in association with their target RNA. In addition to Lsm-family proteins, many of these complexes contain additional protein members. Members of this family of complexes include the snRNPs which comprise the majority of the spliceosome. Others are involved in the 5' to 3' degradation pathways of mRNAs in the cytoplasm and of unspliced transcripts in the nucleus, as well as other diverse roles. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2017-11-08 | Added | RELATION | is a GO:0032991 (protein-containing complex) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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