GO:0140098
JSON
catalytic activity, acting on RNA
Molecular Function
Definition (GO:0140098 GONUTS page)
Catalytic activity that acts to modify RNA, driven by ATP hydrolysis.
Ancestor Chart
Ancestor chart for GO:0140098
Child Terms
This table lists all terms that are direct descendants (child terms) of GO:0140098
Child Term | Relationship to GO:0140098 |
---|---|
second spliceosomal transesterification activity
|
is_a |
RNA topoisomerase activity
|
is_a |
snRNA pseudouridine synthase activity
|
is_a |
tyrosyl-RNA phosphodiesterase activity
|
is_a |
RNA polymerase activity
|
is_a |
RNA ligase activity
|
is_a |
mRNA 5'-triphosphate monophosphatase activity
|
is_a |
RNA helicase activity
|
is_a |
RNA-3'-phosphate cyclase activity
|
is_a |
RNA nuclease activity
|
is_a |
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Annotating to catalytic activities using the IPI evidence code | Link |
Describing enzyme functions that catalyse multi-stage reactions | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | P02521 | 9031 | ARLY1_CHICK | GO:0003824 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000304 from this reference: PMID:11258884 | |
NOT-qualified manual | protein | Q7KGG1 | 7227 | Q7KGG1_DROME | GO:0003824 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000320 from this reference: PMID:11904370 | |
NOT-qualified manual | protein | Q7SIE0 | 9103 | ARLY1_MELGA | GO:0003824 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000304 from this reference: PMID:11258884 | |
NOT-qualified manual | protein | Q8MZ84 | 7227 | Q8MZ84_DROME | GO:0003824 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000320 from this reference: PMID:11904370 |
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
has_primary_input | CHEBI | CHEBI:33697 | ribonucleic acid |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0140098 based on ALL annotations
The top 100 of 301 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
catalytic activity, acting on RNA
|
1,072.83 | 100.00 | 181,705 | 181,705 |
pseudouridine synthase activity
|
549.07 | 51.18 | 181,704 | 355,030 |
pseudouridine synthesis
|
514.67 | 47.97 | 181,704 | 378,760 |
tRNA pseudouridine synthesis
|
836.82 | 43.10 | 89,158 | 114,303 |
mRNA pseudouridine synthesis
|
698.42 | 20.21 | 41,179 | 63,254 |
enzyme-directed rRNA pseudouridine synthesis
|
345.20 | 19.31 | 59,148 | 183,824 |
tRNA pseudouridine(38-40) synthase activity
|
943.69 | 17.73 | 33,008 | 37,525 |
tRNA pseudouridine(55) synthase activity
|
925.39 | 16.33 | 30,472 | 35,327 |
RNA processing
|
170.32 | 15.66 | 167,016 | 1,052,040 |
tRNA processing
|
61.72 | 5.50 | 100,573 | 1,748,269 |
Totals | 1491131 | 125574937 |
No co-occurrence statistics for GO:0140098 based on MANUAL annotations
The top 5 of 5 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
catalytic activity, acting on RNA
|
1,291,799.00 | 100.00 | 1 | 1 |
tRNA (m1A) methyltransferase complex
|
5,167.20 | 0.40 | 1 | 250 |
tRNA processing
|
1,635.19 | 0.13 | 1 | 790 |
tRNA methylation
|
711.34 | 0.06 | 1 | 1,816 |
nucleus
|
6.72 | 0.00 | 1 | 192,276 |
Totals | 5 | 195133 |
GO Slims
This term is present in the following GO Consortium-maintained GO slims:
GO slim name | Total Number of Terms in Slim |
---|---|
goslim_prokaryote | 97 |
goslim_generic | 141 |
Change Log
- All changes
- All changes
- Term
- Term
- Definition / Synonyms
- Definition / Synonyms
- Relationships
- Relationships
- Cross-references
- Cross-references
- Other
- Other
Timestamp | Action | Category | Detail |
---|---|---|---|
2023-12-15 | Added | SUBSET | goslim_prokaryote |
2022-01-12 | Added | SUBSET | goslim_generic |
2021-07-04 | Added | DEFINITION | Catalytic activity that acts to modify RNA, driven by ATP hydrolysis. |
2021-07-04 | Deleted | DEFINITION | Catalytic activity that acts to modify RNA. |
2021-05-15 | Added | RELATION | is a GO:0140640 (catalytic activity, acting on a nucleic acid) |
2021-05-15 | Deleted | RELATION | is a GO:0003824 (catalytic activity) |
2017-09-19 | Added | RELATION | is a GO:0003824 (catalytic activity) |
2017-09-19 | Added | TERM | catalytic activity, acting on RNA |
2017-09-19 | Added | DEFINITION | Catalytic activity that acts to modify RNA. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2017-09-19 | Added | TERM | catalytic activity, acting on RNA |
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-07-04 | Added | DEFINITION | Catalytic activity that acts to modify RNA, driven by ATP hydrolysis. |
2021-07-04 | Deleted | DEFINITION | Catalytic activity that acts to modify RNA. |
2017-09-19 | Added | DEFINITION | Catalytic activity that acts to modify RNA. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-15 | Added | RELATION | is a GO:0140640 (catalytic activity, acting on a nucleic acid) |
2021-05-15 | Deleted | RELATION | is a GO:0003824 (catalytic activity) |
2017-09-19 | Added | RELATION | is a GO:0003824 (catalytic activity) |
Timestamp | Action | Category | Detail |
---|
Timestamp | Action | Category | Detail |
---|---|---|---|
2023-12-15 | Added | SUBSET | goslim_prokaryote |
2022-01-12 | Added | SUBSET | goslim_generic |
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