This term is obsolete.

GO:0140098 JSON

catalytic activity, acting on RNA

Molecular Function

Definition (GO:0140098 GONUTS page)

Catalytic activity that acts to modify RNA, driven by ATP hydrolysis.

11,546,855 annotations

Ancestor Chart

Ancestor chart for GO:0140098
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Ancestor chart

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0140098

Child Term Relationship to
GO:0140098
second spliceosomal transesterification activity
is_a
RNA topoisomerase activity
is_a
snRNA pseudouridine synthase activity
is_a
tyrosyl-RNA phosphodiesterase activity
is_a
RNA polymerase activity
is_a
RNA ligase activity
is_a
mRNA 5'-triphosphate monophosphatase activity
is_a
RNA helicase activity
is_a
RNA-3'-phosphate cyclase activity
is_a
RNA nuclease activity
is_a

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Annotating to catalytic activities using the IPI evidence code Link
Describing enzyme functions that catalyse multi-stage reactions Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein P02521 9031 ARLY1_CHICK GO:0003824 1 NOT-qualified manual annotation exists with evidence code ECO:0000304 from this reference: PMID:11258884
NOT-qualified manual protein Q7KGG1 7227 Q7KGG1_DROME GO:0003824 1 NOT-qualified manual annotation exists with evidence code ECO:0000320 from this reference: PMID:11904370
NOT-qualified manual protein Q7SIE0 9103 ARLY1_MELGA GO:0003824 1 NOT-qualified manual annotation exists with evidence code ECO:0000304 from this reference: PMID:11258884
NOT-qualified manual protein Q8MZ84 7227 Q8MZ84_DROME GO:0003824 1 NOT-qualified manual annotation exists with evidence code ECO:0000320 from this reference: PMID:11904370

Cross-Ontology Relations

Relation Other Ontology ID Term
has_primary_input CHEBI CHEBI:33697 ribonucleic acid

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0140098 based on ALL annotations
The top 100 of 301 co-occurring terms
Co-occurring Term PR S% #Together #Compared
catalytic activity, acting on RNA
1,072.83 100.00 181,705 181,705
pseudouridine synthase activity
549.07 51.18 181,704 355,030
pseudouridine synthesis
514.67 47.97 181,704 378,760
tRNA pseudouridine synthesis
836.82 43.10 89,158 114,303
mRNA pseudouridine synthesis
698.42 20.21 41,179 63,254
enzyme-directed rRNA pseudouridine synthesis
345.20 19.31 59,148 183,824
tRNA pseudouridine(38-40) synthase activity
943.69 17.73 33,008 37,525
tRNA pseudouridine(55) synthase activity
925.39 16.33 30,472 35,327
RNA processing
170.32 15.66 167,016 1,052,040
tRNA processing
61.72 5.50 100,573 1,748,269
Totals 1491131 125574937
No co-occurrence statistics for GO:0140098 based on MANUAL annotations
The top 5 of 5 co-occurring terms
Co-occurring Term PR S% #Together #Compared
catalytic activity, acting on RNA
1,291,799.00 100.00 1 1
tRNA (m1A) methyltransferase complex
5,167.20 0.40 1 250
tRNA processing
1,635.19 0.13 1 790
tRNA methylation
711.34 0.06 1 1,816
nucleus
6.72 0.00 1 192,276
Totals 5 195133

GO Slims

This term is present in the following GO Consortium-maintained GO slims:

GO slim name Total Number of Terms in Slim
goslim_prokaryote 97
goslim_generic 141

Change Log

Timestamp Action Category Detail
2023-12-15 Added SUBSET goslim_prokaryote
2022-01-12 Added SUBSET goslim_generic
2021-07-04 Added DEFINITION Catalytic activity that acts to modify RNA, driven by ATP hydrolysis.
2021-07-04 Deleted DEFINITION Catalytic activity that acts to modify RNA.
2021-05-15 Added RELATION is a GO:0140640 (catalytic activity, acting on a nucleic acid)
2021-05-15 Deleted RELATION is a GO:0003824 (catalytic activity)
2017-09-19 Added RELATION is a GO:0003824 (catalytic activity)
2017-09-19 Added TERM catalytic activity, acting on RNA
2017-09-19 Added DEFINITION Catalytic activity that acts to modify RNA.
Timestamp Action Category Detail
2017-09-19 Added TERM catalytic activity, acting on RNA
Timestamp Action Category Detail
2021-07-04 Added DEFINITION Catalytic activity that acts to modify RNA, driven by ATP hydrolysis.
2021-07-04 Deleted DEFINITION Catalytic activity that acts to modify RNA.
2017-09-19 Added DEFINITION Catalytic activity that acts to modify RNA.
Timestamp Action Category Detail
2021-05-15 Added RELATION is a GO:0140640 (catalytic activity, acting on a nucleic acid)
2021-05-15 Deleted RELATION is a GO:0003824 (catalytic activity)
2017-09-19 Added RELATION is a GO:0003824 (catalytic activity)
Timestamp Action Category Detail
Timestamp Action Category Detail
2023-12-15 Added SUBSET goslim_prokaryote
2022-01-12 Added SUBSET goslim_generic
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