GO:0160147
JSON
tRNA pseudouridine(38-40) synthase activity
Molecular Function
Definition (GO:0160147 GONUTS page)
Catalysis of the reaction: uridine(38/39/40) in tRNA = pseudouridine(38/39/40) in tRNA.
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
PSUI activity | exact |
tRNA pseudouridylate synthase | exact |
Ancestor Chart
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Annotating to catalytic activities using the IPI evidence code | Link |
Describing enzyme functions that catalyse multi-stage reactions | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | P02521 | 9031 | ARLY1_CHICK | GO:0003824 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000304 from this reference: PMID:11258884 | |
NOT-qualified manual | protein | Q7KGG1 | 7227 | Q7KGG1_DROME | GO:0003824 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000320 from this reference: PMID:11904370 | |
NOT-qualified manual | protein | Q7SIE0 | 9103 | ARLY1_MELGA | GO:0003824 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000304 from this reference: PMID:11258884 | |
NOT-qualified manual | protein | Q8MZ84 | 7227 | Q8MZ84_DROME | GO:0003824 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000320 from this reference: PMID:11904370 |
Cross-references
Database | ID | Description |
---|---|---|
EC | 5.4.99.12 | |
MetaCyc | TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN | |
RHEA | 22376 |
Cross-Ontology Relations
Relation | Other Ontology | ID | Term |
---|---|---|---|
has_participant | CHEBI | CHEBI:65315 | uridine 5'-monophosphate(1-) residue |
has_participant | CHEBI | CHEBI:65314 | pseudouridine 5'-phosphate(1-) residue |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:0160147 based on ALL annotations
The top 100 of 124 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
tRNA pseudouridine(38-40) synthase activity
|
5,194.90 | 100.00 | 37,525 | 37,525 |
tRNA pseudouridine synthesis
|
1,680.23 | 32.19 | 36,970 | 114,303 |
catalytic activity, acting on RNA
|
943.69 | 17.73 | 33,008 | 181,705 |
pseudouridine synthase activity
|
548.68 | 10.56 | 37,498 | 355,030 |
pseudouridine synthesis
|
513.50 | 9.88 | 37,439 | 378,760 |
RNA processing
|
163.11 | 3.13 | 33,032 | 1,052,040 |
tRNA processing
|
110.42 | 2.13 | 37,159 | 1,748,269 |
isomerase activity
|
61.19 | 1.18 | 37,495 | 3,183,067 |
mRNA pseudouridine synthesis
|
76.95 | 0.94 | 937 | 63,254 |
RNA binding
|
33.60 | 0.65 | 37,491 | 5,796,616 |
Totals | 331690 | 138576867 |
No co-occurrence statistics for GO:0160147 based on MANUAL annotations
The top 0 of 0 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
Totals | 0 | 0 |
Change Log
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- Term
- Term
- Definition / Synonyms
- Definition / Synonyms
- Relationships
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- Cross-references
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- Other
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Timestamp | Action | Category | Detail |
---|---|---|---|
2024-01-30 | Added | XREF | MetaCyc:TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN |
2024-01-30 | Added | XREF | RHEA:22376 |
2024-01-30 | Added | RELATION | is a GO:0106029 (tRNA pseudouridine synthase activity) |
2024-01-30 | Added | SYNONYM | tRNA pseudouridylate synthase |
2024-01-30 | Added | SYNONYM | PSUI activity |
2024-01-30 | Added | DEFINITION | Catalysis of the reaction: uridine(38/39/40) in tRNA = pseudouridine(38/39/40) in tRNA. |
2024-01-30 | Added | XREF | EC:5.4.99.12 |
2024-01-30 | Added | TERM | tRNA pseudouridine(38-40) synthase activity |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-01-30 | Added | TERM | tRNA pseudouridine(38-40) synthase activity |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-01-30 | Added | SYNONYM | tRNA pseudouridylate synthase |
2024-01-30 | Added | SYNONYM | PSUI activity |
2024-01-30 | Added | DEFINITION | Catalysis of the reaction: uridine(38/39/40) in tRNA = pseudouridine(38/39/40) in tRNA. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-01-30 | Added | RELATION | is a GO:0106029 (tRNA pseudouridine synthase activity) |
Timestamp | Action | Category | Detail |
---|---|---|---|
2024-01-30 | Added | XREF | MetaCyc:TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN |
2024-01-30 | Added | XREF | RHEA:22376 |
2024-01-30 | Added | XREF | EC:5.4.99.12 |
Timestamp | Action | Category | Detail |
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