This term is obsolete.

GO:0160147 JSON

tRNA pseudouridine(38-40) synthase activity

Molecular Function

Definition (GO:0160147 GONUTS page)

Catalysis of the reaction: uridine(38/39/40) in tRNA = pseudouridine(38/39/40) in tRNA.

37,525 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
PSUI activity exact
tRNA pseudouridylate synthase exact

Ancestor Chart

Ancestor chart for GO:0160147
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Ancestor chart

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Annotating to catalytic activities using the IPI evidence code Link
Describing enzyme functions that catalyse multi-stage reactions Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein P02521 9031 ARLY1_CHICK GO:0003824 1 NOT-qualified manual annotation exists with evidence code ECO:0000304 from this reference: PMID:11258884
NOT-qualified manual protein Q7KGG1 7227 Q7KGG1_DROME GO:0003824 1 NOT-qualified manual annotation exists with evidence code ECO:0000320 from this reference: PMID:11904370
NOT-qualified manual protein Q7SIE0 9103 ARLY1_MELGA GO:0003824 1 NOT-qualified manual annotation exists with evidence code ECO:0000304 from this reference: PMID:11258884
NOT-qualified manual protein Q8MZ84 7227 Q8MZ84_DROME GO:0003824 1 NOT-qualified manual annotation exists with evidence code ECO:0000320 from this reference: PMID:11904370

Cross-references

Database ID Description
EC 5.4.99.12
MetaCyc TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN
RHEA 22376

Cross-Ontology Relations

Relation Other Ontology ID Term
has_participant CHEBI CHEBI:65315 uridine 5'-monophosphate(1-) residue
has_participant CHEBI CHEBI:65314 pseudouridine 5'-phosphate(1-) residue

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:0160147 based on ALL annotations
The top 100 of 124 co-occurring terms
Co-occurring Term PR S% #Together #Compared
tRNA pseudouridine(38-40) synthase activity
5,194.90 100.00 37,525 37,525
tRNA pseudouridine synthesis
1,680.23 32.19 36,970 114,303
catalytic activity, acting on RNA
943.69 17.73 33,008 181,705
pseudouridine synthase activity
548.68 10.56 37,498 355,030
pseudouridine synthesis
513.50 9.88 37,439 378,760
RNA processing
163.11 3.13 33,032 1,052,040
tRNA processing
110.42 2.13 37,159 1,748,269
isomerase activity
61.19 1.18 37,495 3,183,067
mRNA pseudouridine synthesis
76.95 0.94 937 63,254
RNA binding
33.60 0.65 37,491 5,796,616
Totals 331690 138576867
No co-occurrence statistics for GO:0160147 based on MANUAL annotations
The top 0 of 0 co-occurring terms
Co-occurring Term PR S% #Together #Compared
Totals 0 0

Change Log

Timestamp Action Category Detail
2024-01-30 Added XREF MetaCyc:TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN
2024-01-30 Added XREF RHEA:22376
2024-01-30 Added RELATION is a GO:0106029 (tRNA pseudouridine synthase activity)
2024-01-30 Added SYNONYM tRNA pseudouridylate synthase
2024-01-30 Added SYNONYM PSUI activity
2024-01-30 Added DEFINITION Catalysis of the reaction: uridine(38/39/40) in tRNA = pseudouridine(38/39/40) in tRNA.
2024-01-30 Added XREF EC:5.4.99.12
2024-01-30 Added TERM tRNA pseudouridine(38-40) synthase activity
Timestamp Action Category Detail
2024-01-30 Added TERM tRNA pseudouridine(38-40) synthase activity
Timestamp Action Category Detail
2024-01-30 Added SYNONYM tRNA pseudouridylate synthase
2024-01-30 Added SYNONYM PSUI activity
2024-01-30 Added DEFINITION Catalysis of the reaction: uridine(38/39/40) in tRNA = pseudouridine(38/39/40) in tRNA.
Timestamp Action Category Detail
2024-01-30 Added RELATION is a GO:0106029 (tRNA pseudouridine synthase activity)
Timestamp Action Category Detail
2024-01-30 Added XREF MetaCyc:TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN
2024-01-30 Added XREF RHEA:22376
2024-01-30 Added XREF EC:5.4.99.12
Timestamp Action Category Detail
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