This term is obsolete.

GO:1990970 JSON

trans-activation response element binding

Molecular Function

Definition (GO:1990970 GONUTS page)

Binding to a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter. PMID:25116364

Acknowledgement

This term was created by the GO Consortium with support from: PARK image

8,878 annotations

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.

Synonym Type
TAR binding exact

Ancestor Chart

Ancestor chart for GO:1990970
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Ancestor chart

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:

Binding term considerations Link

Annotation Blacklist

This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:

Category Entity Type Entity ID Taxon ID Entity Name Ancestor GO ID Reason Rule/Method ID
NOT-qualified manual protein B1WC40 10116 NCBP2_RAT GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein P52298 9606 NCBP2_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:7478990
NOT-qualified manual protein P52299 8355 NCBP2_XENLA GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024
NOT-qualified manual protein Q15287 9606 RNPS1_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:22388736
NOT-qualified manual protein Q23500 6239 ACOHC_CAEEL GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:12438312
NOT-qualified manual protein Q52KI8 10090 SRRM1_MOUSE GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: PMID:9531537
NOT-qualified manual protein Q6AYK1 10116 RNPS1_RAT GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096
NOT-qualified manual protein Q6QN14 9606 U17L6_HUMAN GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:17109758
NOT-qualified manual protein Q9CQ49 10090 NCBP2_MOUSE GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024
NOT-qualified manual protein Q9YH12 8319 LSM14_PLEWA GO:0003723 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:9851867

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated.

No co-occurrence statistics for GO:1990970 based on ALL annotations
The top 39 of 39 co-occurring terms
Co-occurring Term PR S% #Together #Compared
trans-activation response element binding
21,964.93 100.00 8,875 8,875
symbiont-mediated suppression of host translation initiation
20,003.98 91.07 8,875 9,745
symbiont-mediated perturbation of host chromatin organization
19,694.77 89.66 8,875 9,898
actinin binding
14,440.98 65.75 8,875 13,499
RNA-binding transcription regulator activity
11,268.14 51.30 8,875 17,300
positive regulation of viral transcription
10,765.34 49.01 8,875 18,108
protein serine/threonine phosphatase inhibitor activity
9,166.26 41.73 8,875 21,267
cyclin binding
5,868.12 26.72 8,875 33,220
protein domain specific binding
4,898.33 22.30 8,875 39,797
positive regulation of transcription elongation by RNA polymerase II
4,589.93 20.90 8,875 42,471
Totals 177540 102121765
No co-occurrence statistics for GO:1990970 based on MANUAL annotations
The top 20 of 20 co-occurring terms
Co-occurring Term PR S% #Together #Compared
trans-activation response element binding
430,599.70 100.00 3 3
RNA-binding transcription regulator activity
215,299.83 25.00 1 2
symbiont-mediated perturbation of host chromatin organization
215,299.83 25.00 1 2
viral gene expression
71,766.62 12.50 1 6
RNA polymerase core enzyme binding
35,883.31 8.33 3 36
regulatory region RNA binding
26,912.48 5.56 1 16
positive regulation of viral transcription
17,941.65 3.85 1 24
negative regulation of peptidyl-threonine phosphorylation
12,302.85 2.70 1 35
transcription regulator activator activity
8,970.83 2.00 1 48
histone acetyltransferase binding
7,510.46 1.74 3 172
Totals 34 47488

Change Log

Timestamp Action Category Detail
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter.
2021-05-24 Added DEFINITION Binding to a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter.
2016-06-23 Added SYNONYM TAR binding
2016-06-23 Added DEFINITION Interacting selectively and non-covalently with a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter.
2016-06-23 Added RELATION is a GO:0070883 (pre-miRNA binding)
2016-06-23 Added TERM trans-activation response element binding
Timestamp Action Category Detail
2016-06-23 Added TERM trans-activation response element binding
Timestamp Action Category Detail
2021-05-24 Deleted DEFINITION Interacting selectively and non-covalently with a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter.
2021-05-24 Added DEFINITION Binding to a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter.
2016-06-23 Added SYNONYM TAR binding
2016-06-23 Added DEFINITION Interacting selectively and non-covalently with a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter.
Timestamp Action Category Detail
2016-06-23 Added RELATION is a GO:0070883 (pre-miRNA binding)
Timestamp Action Category Detail
Timestamp Action Category Detail
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