GO:1990970
JSON
trans-activation response element binding
Molecular Function
Definition (GO:1990970 GONUTS page)
Binding to a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter. PMID:25116364
Acknowledgement
This term was created by the GO Consortium with support from:
Synonyms
Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope.
Synonym | Type |
---|---|
TAR binding | exact |
Ancestor Chart
Annotation Guidance
Usage of this term is subject to the following annotation guidelines:
Binding term considerations | Link |
Annotation Blacklist
This list aims to correct incorrect annotations to UniProtKB accessions inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium:
Category | Entity Type | Entity ID | Taxon ID | Entity Name | Ancestor GO ID | Reason | Rule/Method ID |
---|---|---|---|---|---|---|---|
NOT-qualified manual | protein | B1WC40 | 10116 | NCBP2_RAT | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | P52298 | 9606 | NCBP2_HUMAN | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:7478990 | |
NOT-qualified manual | protein | P52299 | 8355 | NCBP2_XENLA | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024 | |
NOT-qualified manual | protein | Q15287 | 9606 | RNPS1_HUMAN | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:22388736 | |
NOT-qualified manual | protein | Q23500 | 6239 | ACOHC_CAEEL | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:12438312 | |
NOT-qualified manual | protein | Q52KI8 | 10090 | SRRM1_MOUSE | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: PMID:9531537 | |
NOT-qualified manual | protein | Q6AYK1 | 10116 | RNPS1_RAT | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000266 from this reference: GO_REF:0000096 | |
NOT-qualified manual | protein | Q6QN14 | 9606 | U17L6_HUMAN | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:17109758 | |
NOT-qualified manual | protein | Q9CQ49 | 10090 | NCBP2_MOUSE | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000250 from this reference: GO_REF:0000024 | |
NOT-qualified manual | protein | Q9YH12 | 8319 | LSM14_PLEWA | GO:0003723 | 1 NOT-qualified manual annotation exists with evidence code ECO:0000314 from this reference: PMID:9851867 |
Co-occurring Terms
These tables show the number of times the term listed in the table has been co-annotated.
No co-occurrence statistics for GO:1990970 based on ALL annotations
The top 39 of 39 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
trans-activation response element binding
|
21,964.93 | 100.00 | 8,875 | 8,875 |
symbiont-mediated suppression of host translation initiation
|
20,003.98 | 91.07 | 8,875 | 9,745 |
symbiont-mediated perturbation of host chromatin organization
|
19,694.77 | 89.66 | 8,875 | 9,898 |
actinin binding
|
14,440.98 | 65.75 | 8,875 | 13,499 |
RNA-binding transcription regulator activity
|
11,268.14 | 51.30 | 8,875 | 17,300 |
positive regulation of viral transcription
|
10,765.34 | 49.01 | 8,875 | 18,108 |
protein serine/threonine phosphatase inhibitor activity
|
9,166.26 | 41.73 | 8,875 | 21,267 |
cyclin binding
|
5,868.12 | 26.72 | 8,875 | 33,220 |
protein domain specific binding
|
4,898.33 | 22.30 | 8,875 | 39,797 |
positive regulation of transcription elongation by RNA polymerase II
|
4,589.93 | 20.90 | 8,875 | 42,471 |
Totals | 177540 | 102121765 |
No co-occurrence statistics for GO:1990970 based on MANUAL annotations
The top 20 of 20 co-occurring terms
Co-occurring Term | PR | S% | #Together | #Compared |
---|---|---|---|---|
trans-activation response element binding
|
430,599.70 | 100.00 | 3 | 3 |
RNA-binding transcription regulator activity
|
215,299.83 | 25.00 | 1 | 2 |
symbiont-mediated perturbation of host chromatin organization
|
215,299.83 | 25.00 | 1 | 2 |
viral gene expression
|
71,766.62 | 12.50 | 1 | 6 |
RNA polymerase core enzyme binding
|
35,883.31 | 8.33 | 3 | 36 |
regulatory region RNA binding
|
26,912.48 | 5.56 | 1 | 16 |
positive regulation of viral transcription
|
17,941.65 | 3.85 | 1 | 24 |
negative regulation of peptidyl-threonine phosphorylation
|
12,302.85 | 2.70 | 1 | 35 |
transcription regulator activator activity
|
8,970.83 | 2.00 | 1 | 48 |
histone acetyltransferase binding
|
7,510.46 | 1.74 | 3 | 172 |
Totals | 34 | 47488 |
Change Log
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Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter. |
2021-05-24 | Added | DEFINITION | Binding to a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter. |
2016-06-23 | Added | SYNONYM | TAR binding |
2016-06-23 | Added | DEFINITION | Interacting selectively and non-covalently with a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter. |
2016-06-23 | Added | RELATION | is a GO:0070883 (pre-miRNA binding) |
2016-06-23 | Added | TERM | trans-activation response element binding |
Timestamp | Action | Category | Detail |
---|---|---|---|
2016-06-23 | Added | TERM | trans-activation response element binding |
Timestamp | Action | Category | Detail |
---|---|---|---|
2021-05-24 | Deleted | DEFINITION | Interacting selectively and non-covalently with a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter. |
2021-05-24 | Added | DEFINITION | Binding to a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter. |
2016-06-23 | Added | SYNONYM | TAR binding |
2016-06-23 | Added | DEFINITION | Interacting selectively and non-covalently with a trans-activation response (TAR) element, a hairpin RNA structure located at the 5' end of all HIV-1 transcripts, and which is required for trans-activation of a viral promoter. |
Timestamp | Action | Category | Detail |
---|---|---|---|
2016-06-23 | Added | RELATION | is a GO:0070883 (pre-miRNA binding) |
Timestamp | Action | Category | Detail |
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Timestamp | Action | Category | Detail |
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