ID AB083196; SV 1; linear; genomic RNA; STD; VRL; 6385 BP. XX AC AB083196; XX DT 04-APR-2003 (Rel. 75, Created) DT 25-MAR-2004 (Rel. 79, Last updated, Version 3) XX DE Tomato mosaic virus genomic RNA, complete genome, strain:L11A-Fukushima. XX KW . XX OS Tomato mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6385 RA Abe T., Ueda K., Yamamoto H., Inoue M., Matsumoto T.; RT ; RL Submitted (05-APR-2002) to the INSDC. RL Hideki Yamamoto, Akita Agricultural Experiment Station, Department of RL Biotechnology; Higashi 1-1, Ohgata, Akita 010-0442, Japan RL (E-mail:yamamoto@pref.akita.lg.jp, Tel:81-185-45-3101, Fax:81-185-45-3105) XX RN [2] RA Yamamoto H., Abe T., Ueda K., Inoue M., Matsumoto T.; RT "A missense mutation in Tomato mosaic virus L11A-Fukushima genome RT determines its symptomless systemic infection of tomato"; RL J. Gen. Plant Pathol. 68:385-389(2002). XX DR MD5; 22aa68a243cb2c5cca3fbb1b210cee76. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01077; TLS-PK2. DR RFAM; RF01115; TMV_UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6385 FT /organism="Tomato mosaic virus" FT /strain="L11A-Fukushima" FT /mol_type="genomic RNA" FT /db_xref="taxon:12253" FT CDS 73..4923 FT /codon_start=1 FT /transl_table=1 FT /transl_except=(pos:3421..3423,aa:OTHER) FT /product="180K protein" FT /note="readthrough stop codon" FT /db_xref="GOA:Q80LG0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q80LG0" FT /protein_id="BAC67678.1" FT /translation="MAYTQTATSSALLETVRGNNTLVNDLAKRRLYDTAVDEFNARDRR FT PKVNFSKVVSEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGNKHVPNFQ FT KEAFDRYAEMPNEVVCHDTFQTCRHSQECYTGRVYAIALHSIYDIPADEFGAALLRKNV FT HVCYAAFHFSENLLLEDSHVNLDEINACFQRDGDRLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKGVDSEQFYKAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT YTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFFLH FT TKLAVLKDDLLISKFALGPKTVSQHVWDEISLAFGNAFPSIKERLINRKLIKITENALE FT IRVPDLYVTFHDRLVSEYKMSVDMPVLDIRKKMEETEEMYNALSELSVLKNSDKFDVDV FT FSQMCQSLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALQDSEKASDGALIVT FT SRDVEEPSIKGSMARGELQLAGLSGDVPESSYTRSEEIESLEQFHMATASSLIHKQMCS FT IVYTGPLKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASKRWL FT VKPSAKDHAWGVVETHARKYHVALLEHDEFGIITCDNWRRVAVSSESVVYSDMAKLRTL FT RRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANA FT SGIIVATKDNVRTVDSFLMNYGKRARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYV FT YGDTQQIPYINRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTS FT SEKKSVSQEMVSGAASINPVSKPLKGKILTFTQSDKEALLSRGYADVHTVHEVQGETYA FT DVSLVRLTPTPVSIIARDSPHVLVSLSRHTKSLKYYTVVMDPLVSIIRDLERVSSYLLD FT MYKVDAGTQXQLQVDSVFKNFNLFVAAPKTGDISDMQFYYDKCLPGNSTLLNNYDAVTM FT KLTDISLNVKDCILDMSKSVAAPKDVKPTLIPMVRTAAEMPRQTGLLENLVAMIKRNFN FT SPELSGVVDIENTASLVVDKFFDSYLLKEKRKPNKNFSLFSRESLNRWIAKQEQVTIGQ FT LADFDFVDLPAVDQYRHMIKAQPKQKLDLSIQTEYPALQTIVYHSKKINAIFGPLFSEL FT TRQLLDSIDSSRFLFFTRKTPAQIEDFFGDLDSHVPMDVLELDVSKYDKSQNEFHCAVE FT YEIWRRLGLEDFLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIASC FT LASMLPMEKLIKGAFCGDDSLLYFPKGCEYPDIQQAANLMWNFEAKLFKKQYGYFCGRY FT VIHHDRGCIVYYDPLKLISKLGAKHIKDWDHLEEFRRSLCDVAESLNNCAYYTQLDDAV FT GEVHKTAPPGSFVYKSLVKYLSDKVLFRSLFLDGSSC" FT CDS 73..3423 FT /codon_start=1 FT /transl_table=1 FT /product="130K protein" FT /db_xref="GOA:Q80LF9" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q80LF9" FT /protein_id="BAC67679.1" FT /translation="MAYTQTATSSALLETVRGNNTLVNDLAKRRLYDTAVDEFNARDRR FT PKVNFSKVVSEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGNKHVPNFQ FT KEAFDRYAEMPNEVVCHDTFQTCRHSQECYTGRVYAIALHSIYDIPADEFGAALLRKNV FT HVCYAAFHFSENLLLEDSHVNLDEINACFQRDGDRLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKGVDSEQFYKAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT YTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFFLH FT TKLAVLKDDLLISKFALGPKTVSQHVWDEISLAFGNAFPSIKERLINRKLIKITENALE FT IRVPDLYVTFHDRLVSEYKMSVDMPVLDIRKKMEETEEMYNALSELSVLKNSDKFDVDV FT FSQMCQSLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALQDSEKASDGALIVT FT SRDVEEPSIKGSMARGELQLAGLSGDVPESSYTRSEEIESLEQFHMATASSLIHKQMCS FT IVYTGPLKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASKRWL FT VKPSAKDHAWGVVETHARKYHVALLEHDEFGIITCDNWRRVAVSSESVVYSDMAKLRTL FT RRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANA FT SGIIVATKDNVRTVDSFLMNYGKRARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYV FT YGDTQQIPYINRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTS FT SEKKSVSQEMVSGAASINPVSKPLKGKILTFTQSDKEALLSRGYADVHTVHEVQGETYA FT DVSLVRLTPTPVSIIARDSPHVLVSLSRHTKSLKYYTVVMDPLVSIIRDLERVSSYLLD FT MYKVDAGTQ" FT CDS 4907..5701 FT /codon_start=1 FT /transl_table=1 FT /product="30K protein" FT /db_xref="GOA:Q780A9" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q780A9" FT /protein_id="BAC67680.1" FT /translation="MALVVKGKVNINEFIDLSKSEKLLPSMFTPVKSVMVSKVDKIMVH FT ENESLSEVNLLKGVKLIEGGYVCLVGLVVSGEWNLPDNCRGGVSVCMVDKRMERADEAT FT LGSYYTAAAKKRFQFKVVPNYGITTKDAEKNIWQVLVNIKNVKMSAGYCPLSLEFVSVC FT IVYKNNIKLGLREKVTSVNDGGPMELSEEVVDEFMENVPMSVRLAKFRTKSSKRGPKNN FT NNLGKGRSGGRPKPKSFDEVEKEFDNLIEDEAETSVADSDSY" FT CDS 5704..6183 FT /codon_start=1 FT /transl_table=1 FT /product="17.5K protein" FT /db_xref="GOA:Q780A8" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q780A8" FT /protein_id="BAC67681.1" FT /translation="MSYSITSPSQFVFLSSVWADPIELLNVCTNSLGNQFQTQQARTTV FT QQQFSEVWKPFPQSTVRFPGDVYKVYRYNAVLDPLITALLGAFDTRNRIIEVENQQSPT FT TAETLDATRRVDDATVAIRSAINNLVNELVRGTGLYNQNTFESMSGLVWTSAPAS" XX SQ Sequence 6385 BP; 1903 A; 1183 C; 1482 G; 1817 T; 0 other; gtatttttta caacaattac caacaacaac aacaaacaac aacaacatta cattttacat 60 tctacaacta caatggcata cacacaaaca gccacatcgt ccgctttgct tgagaccgtc 120 cgaggtaaca ataccttggt caacgatctt gcaaagcggc gtctatatga cacagcggtc 180 gatgaattta atgctaggga ccgcaggcct aaagtcaatt tttccaaagt agtaagcgaa 240 gaacagacgc ttattgcaac caaagcctac ccagaattcc aaattacatt ctacaacacg 300 cagaatgctg tgcattccct tgcaggcggt ctccgatcat tagaattgga atatctgatg 360 atgcaaattc cctacggatc attgacatat gatatcggag gtaattttgc atctcatctg 420 ttcaaagggc gagcatacgt tcactgctgt atgccgaatc tggatgtccg cgacataatg 480 cggcacgagg gccaaaagga cagtattgaa ctataccttt ctaggctcga gaggggcaac 540 aaacatgtcc caaacttcca aaaggaagct ttcgacagat acgctgaaat gccaaacgaa 600 gtagtctgtc acgatacttt ccaaacgtgt aggcactctc aagaatgtta cacgggaaga 660 gtgtatgcta ttgctttgca tagtatatac gatatacctg ccgacgagtt cggcgcggca 720 ctgctgagaa agaatgtaca tgtatgttat gccgctttcc acttttccga gaatttactt 780 ctcgaagatt cacacgtcaa cctcgacgag atcaatgcat gtttccaaag agatggagac 840 aggttgactt tttcctttgc atctgagagt actcttaatt atagtcatag ttattctaat 900 attcttaagt atgtttgcaa aacttacttc ccagcctcta atagagaggt ttacatgaag 960 gagtttttag taactagagt taatacctgg ttttgtaaat tttctagaat agatactttc 1020 ttattgtaca aaggtgtagc gcataagggt gtagatagtg agcagtttta caaggctatg 1080 gaagacgcat ggcactacaa aaagactctt gcgatgtgca acagtgaaag aatcttgtta 1140 gaggattctt catcagttaa ttactggttt ccaaaaatga gggatatggt gatagttcca 1200 ctatttgaca tatctctcga gactagtaaa agaacacgca aagaggtctt agtttcaaag 1260 gactttgttt atacagtgtt aaatcacatt cgtacgtacc aggccaaagc gcttacttac 1320 tccaacgtgt tatctttcgt cgaatcaatt cgttcgagag tgatcattaa cggggttact 1380 gctaggtctg agtgggatgt cgataaatca ttattacagt ccttgtcgat gacgttcttc 1440 ctacacacca agcttgccgt tctgaaagac gatcttttga ttagcaagtt tgcacttgga 1500 ccaaaaactg tctcacaaca tgtgtgggat gagatttccc tagctttcgg caatgctttc 1560 ccatcgatca aggaaagatt gataaaccgg aaactgatca aaattacgga gaatgcgtta 1620 gagatcaggg tgcccgatct ttatgtcact ttccatgata ggttagtttc tgagtacaaa 1680 atgtcagtgg acatgccggt gctagacatt aggaaaaaga tggaagaaac tgaggaaatg 1740 tacaatgcac tgtccgaact gtctgtactt aaaaattcag acaagttcga tgttgacgtt 1800 ttttcccaga tgtgccaatc tttagaagtc gatccaatga ctgcagcaaa ggtaatagta 1860 gcagttatga gcaacgagag tggtcttact ctcacgtttg aacagcccac cgaagctaat 1920 gttgcgctag cattgcaaga ttctgaaaag gcttctgatg gggcgttgat agttacctca 1980 agagatgttg aggaaccgtc cataaagggt tcgatggccc gtggtgagtt acaattggcc 2040 ggattatctg gcgacgttcc tgaatcttca tacactagga gcgaggagat tgagtctctc 2100 gagcagtttc atatggcaac agctagttcg ttaattcata agcagatgtg ttcgatcgtg 2160 tacacgggcc ctcttaaagt tcaacaaatg aaaaacttta tagacagcct ggtagcctcg 2220 ctctctgctg cggtgtcgaa tctagtgaag atcctaaaag atacagctgc gattgacctt 2280 gaaactcgtc aaaagttcgg agttctggat gttgcttcga aaaggtggct agttaaacca 2340 tccgcaaagg accatgcatg gggggttgtt gagactcatg cgaggaaata tcacgtcgca 2400 ttactggagc acgatgaatt tggcattatt acgtgcgata actggcgacg ggtggctgtg 2460 agttctgagt cggtagtata ttctgatatg gctaaactca ggactctgag aagattgctc 2520 aaagatggag aaccacacgt tagttcagca aaggtggttt tggtggatgg cgttccaggg 2580 tgcgggaaga caaaggaaat tctttcgaga gttaatttcg aagaagatct aattcttgtc 2640 cctggtcgtc aagctgccga gatgatcaga agaagagcta atgcgtcggg cataatagtg 2700 gctacaaagg ataatgtgcg caccgttgat tcatttttga tgaattacgg gaaaagggca 2760 cgctgtcagt tcaaaagatt gttcatagac gaaggtttga tgctgcatac tggttgtgtg 2820 aattttttgg ttgaaatgtc tctgtgcgat attgcatatg tttatggaga cacccaacag 2880 attccgtaca tcaacagagt aactggtttc ccgtaccctg cacactttgc aaaattggag 2940 gtcgacgaag tcgaaacaag aagaactact cttcgttgtc cggctgatgt cacacacttc 3000 ctaaatcaaa ggtatgaagg acacgtaatg tgcacgtctt ctgaaaagaa atcagtttcc 3060 caggaaatgg ttagtggggc tgcgtctatc aatcctgtgt ccaagccgct taagggaaaa 3120 attttgactt tcacacagtc tgacaaggag gcccttctct caaggggcta cgcagatgtc 3180 catactgtac atgaggtaca aggtgagact tatgcagacg tatcgttagt tcgactaaca 3240 cctacgcctg tatctatcat cgcaagagac agtccgcatg ttctggtctc gttgtcaaga 3300 cacacaaaat ccctaaagta ctacaccgtt gtgatggatc ctttagttag tatcattaga 3360 gatttagaac gggttagtag ttacttatta gacatgtaca aagtagatgc aggtactcaa 3420 tagcaattac aggtcgactc tgtgtttaaa aatttcaatc tttttgtagc agctccaaag 3480 actggagata tatctgatat gcaattttac tatgataagt gtcttcctgg gaacagcacg 3540 ttgttgaaca actacgacgc tgttaccatg aaattgactg acatttctct gaatgtcaaa 3600 gattgcatat tagatatgtc taagtctgta gctgctccga aagatgtcaa accaacttta 3660 ataccgatgg tacgaacggc ggcagaaatg cctcgccaga ctggactgtt ggaaaatcta 3720 gttgcgatga ttaaaagaaa ttttaattca ccagagttgt ccggagtagt tgatattgaa 3780 aatactgcat ctttagtggt agataagttt tttgatagtt atttacttaa ggaaaaaaga 3840 aaaccaaaca aaaatttttc actgtttagt agagagtctc tcaataggtg gatagcaaag 3900 caagaacaag tcacaattgg tcagttggcc gattttgatt ttgtggatct tccagccgtt 3960 gatcagtaca ggcatatgat taaagcgcaa ccgaagcaga aactggatct gtcaattcag 4020 acagaatatc cagcgttgca aacgattgtg tatcattcaa agaaaatcaa cgcaatattt 4080 ggtcctcttt tcagtgagct tacaaggcaa ttacttgaca gtattgactc aagcagattc 4140 ttgttcttta cgagaaagac accggctcag atcgaagatt tcttcggaga tctagacagt 4200 catgtcccaa tggacgtact tgagttggat gtttcgaagt atgataagtc tcaaaacgag 4260 tttcattgtg ctgttgagta cgaaatctgg aggagactgg gtctggagga tttcttggca 4320 gaagtgtgga aacaagggca taggaaaacc actctgaaag attacactgc tggtataaaa 4380 acgtgtttat ggtaccagag aaagagtggt gatgttacaa cttttatcgg taataccgtc 4440 atcattgctt cgtgtctagc atcaatgctc ccgatggaaa aattgataaa aggagccttc 4500 tgcggagatg acagtttgtt gtactttcct aagggttgtg agtatcccga tatacaacaa 4560 gctgctaatc taatgtggaa ttttgaggcc aaactgttca agaagcaata tgggtacttc 4620 tgcgggaggt acgtgattca tcacgataga ggttgcatag tatactacga ccctttgaag 4680 ctgatttcga aacttggtgc taaacacatc aaggattggg atcatttgga ggagttcaga 4740 agatccctct gtgatgttgc tgagtcgttg aacaattgcg cgtattacac acaattggac 4800 gacgctgttg gggaggttca taaaaccgcc ccacctggtt cgtttgttta taagagttta 4860 gttaagtatt tgtcagataa agttttgttt agaagtttat ttcttgatgg ctctagttgt 4920 taaaggtaag gtaaatatta atgagtttat cgatctgtca aagtctgaga aacttctccc 4980 gtcgatgttc acgcctgtaa agagtgttat ggtttcaaag gttgataaga ttatggtcca 5040 tgaaaatgaa tcattgtctg aagtaaatct cttaaaaggt gtaaaactta tagaaggtgg 5100 gtatgtttgc ttagtcggtc ttgttgtgtc cggtgagtgg aatttaccag ataattgccg 5160 tggtggtgtg agtgtctgca tggttgacaa gagaatggaa agagcggacg aagccacact 5220 ggggtcatat tacactgctg ctgctaaaaa gcggtttcag tttaaagtgg tcccaaacta 5280 cggtattaca acaaaggatg cagaaaagaa catatggcag gtcttagtaa atattaaaaa 5340 tgtaaaaatg agtgcgggct actgcccttt gtcattagaa tttgtgtctg tgtgtattgt 5400 ttataaaaat aatataaaat tgggtttgag ggagaaagta acgagtgtga acgatggagg 5460 acccatggaa ctttcagaag aagttgttga tgagttcatg gagaatgttc caatgtcggt 5520 tagactcgca aagtttcgaa ccaaatcctc aaaaagaggt ccgaaaaata ataataattt 5580 aggtaagggg cgttcaggcg gaaggcctaa accaaaaagt tttgatgaag ttgaaaaaga 5640 gtttgataat ttgattgaag atgaagccga gacgtcggtc gcggattctg attcgtatta 5700 aatatgtctt actcaatcac ttctccatcg caatttgtgt ttttgtcatc tgtatgggct 5760 gaccctatag aattgttaaa cgtttgtaca aattcgttag gtaaccagtt tcaaacgcag 5820 caagcaagaa ctactgttca acagcagttc agcgaggtgt ggaaaccttt ccctcagagc 5880 accgtcagat ttcctggcga tgtttataag gtgtacaggt acaatgcagt tttagatcct 5940 ctaattactg cgttgctggg ggctttcgat actaggaata gaataatcga agtagaaaac 6000 cagcagagtc cgacaacagc tgaaacgtta gatgctaccc gcagggtaga cgacgctacg 6060 gttgcaattc ggtctgctat aaataattta gttaatgaac tagtaagagg tactggactg 6120 tacaatcaga atacttttga aagtatgtct gggttggtct ggacctctgc acctgcatct 6180 taaatgcata ggtgctgaaa tataaagttt gtgtttctaa aacacacgtg gtacgtacga 6240 taacgtacag tgtttttccc tccacttaaa tcgaagggta gtgtcttgga gcgcgcggag 6300 taaacatata tggttcatat atgtccgtag gcacgtaaaa aaagcgaggg attcgaattc 6360 ccccggaacc cccggttggg gccca 6385 //