ID AB178946; SV 1; circular; genomic DNA; STD; VRL; 2763 BP. XX AC AB178946; XX DT 13-MAY-2004 (Rel. 79, Created) DT 06-JUL-2018 (Rel. 137, Last updated, Version 5) XX DE Honeysuckle yellow vein virus DNA, complete genome, isolate: HY12. XX KW . XX OS Honeysuckle yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2763 RA Were H.K., Takanami Y.; RT ; RL Submitted (11-MAY-2004) to the INSDC. RL Contact:Yoichi Takanami Kyushu University, Faculty of Agriculture; 6-10-1 RL Hakozaki, Higashi-ku, Fukuoka, Fukuoka 812-8581, Japan XX RN [2] RA Were H.K., Takanami Y.; RT "Honeysuckle yellow vein mosaic virus"; RL Unpublished. XX DR MD5; bd6146e9e3dadc1224bf0f18005c1e07. XX FH Key Location/Qualifiers FH FT source 1..2763 FT /organism="Honeysuckle yellow vein virus" FT /isolate="HY12" FT /mol_type="genomic DNA" FT /country="Japan:Hyougo,Kobe Univ." FT /clone="pHS12" FT /note="originally submitted 'Honeysuckle yellow vein mosaic FT virus'" FT /note="synonym:Honeysuckle-infecting geminivirus" FT /db_xref="taxon:240865" FT CDS 137..487 FT /codon_start=1 FT /transl_table=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:Q6L6W6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q6L6W6" FT /protein_id="BAD18937.1" FT /translation="MWDPLLNDFPETVHGFRCMLAVKYLLLVESTYSPDTVGFDLIRDL FT ILVVRAKNYVEATCRYRDFHSRLQGTSTSELRRPVRQPCECPHCPRHKQKEIMGSTAHV FT SEAQDVQNVQKS" FT CDS 297..1070 FT /codon_start=1 FT /transl_table=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q6L6W5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q6L6W5" FT /protein_id="BAD18938.1" FT /translation="MSKRPADIGIFTPAFRARRRLNFDGPYVSRASAPIALVTNKRRSW FT AQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFEKKNDVGHSGTLLCVSDITRGSGLTH FT RVGKRFCIKSVYIIGKIWMDDSIKTKNHTNNVLFWLVRDRRPGSTPYVFREAFNMFENE FT PSTATIKQELRDRLQVLHRFSATVTGGQYTSKEQAVIKRFWKLNHHVTYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRVYFYDSVQN" FT CDS complement(1067..1471) FT /codon_start=1 FT /transl_table=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q6L6W4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q6L6W4" FT /protein_id="BAD18939.1" FT /translation="MDSRTGDTITAAQARNGAYTWTVPNPLYFKITTHAQRPFNMDQDI FT ITLQIQFNHNLRNQLHIHKCFLSFKIWTRLHPQTLHFLRVFRTQVLKYIDNLGVISINN FT VIRAVDHVLYNVFEGTEYVQQFTDIKFKLY" FT CDS complement(1212..1619) FT /codon_start=1 FT /transl_table=1 FT /gene="C2" FT /product="transcriptional trans-activator protein" FT /db_xref="GOA:C1KDZ2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C1KDZ2" FT /protein_id="BAD18940.1" FT /translation="MQPSSPSTAHSTQVPIKVRHRSEKRRAPRRRRIDLNCGCSIYVAL FT GCANHGFTHRGHHHCSSGKEWRVYLDSAQSPIFQNHDTRATAIQHGSGYNNFTDTIQPQ FT PQESTAHTQVLPLFQDLDSLTSSDFAFLEGI" FT CDS complement(1519..2610) FT /codon_start=1 FT /transl_table=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:Q6L6W2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q6L6W2" FT /protein_id="BAD18941.1" FT /translation="MAPPKRFKINSKNYFLTYPHCSLTKEEALSQIQALETPTNKLFIR FT ICRELHEDGSPHLHVLIQFEGKYQCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDVVDYGVFQVDGRSARGGCQSANDAYAEAINSGSKSSALSILREKAPKDFVLQFH FT NLNSNLDGLFSPPLEESVCPFLSSSFDRVPEELEEWAAENVRDSAARPWRPMSIVIEGD FT SRTGKTMWARSLSPHHNYLCGHLDLSPKVYSNSAWYNVIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTVFLCNPGPTSSYTEYLDEDKNAALKAWAIKNATFVTLYGP FT LYSGTHQGATQIREEESTSPEED" FT CDS complement(2160..2453) FT /codon_start=1 FT /transl_table=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q6L6W1" FT /protein_id="BAD18942.1" FT /translation="MGALISTSSSSSKGNTSARINDSSTSYPQLGQHISIRTFRELRAH FT QTSRPTWRKTETSLIMEFSRSMEDQLEEVANLPTTHMPRQSTQALNHRPCLY" XX SQ Sequence 2763 BP; 709 A; 563 C; 649 G; 842 T; 0 other; accggatggc cgccgccgaa atttacgtgg ggcccaccat gtcggccaat agagttcgtg 60 ccttgaaagt tagataagtg gatgttgacg tcacttttgt ctttatatat gtcagcccta 120 attttaaggg ttaaagatgt gggatccttt acttaatgat ttccctgaaa ccgtacacgg 180 ttttaggtgt atgttagcgg ttaaatacct tcttctcgtt gagtcaacat actctccgga 240 tacggtgggt ttcgatttga tacgtgatct tatactcgtt gttcgtgcga agaattatgt 300 cgaagcgacc tgcagatata gggattttca ctcccgcctt cagggcacgt cgacgtctga 360 acttcgacgg cccgtacgtc agccgtgcga gtgcccccat tgccctcgtc acaaacaaaa 420 ggagatcatg ggctcaacgg cccatgtatc ggaagcccag gatgtacaga atgtacagaa 480 gtcctgatgt tcccaagggg tgtgaaggtc cgtgtaaggt acagtcattt gagaagaaga 540 atgatgttgg gcattctggt actctgctct gtgtttctga tatcactcgt ggtagtggac 600 ttactcatcg tgttgggaag agattttgta taaaatctgt ttatattatt ggtaaaatct 660 ggatggatga tagtattaag acgaagaatc acactaacaa cgtgttattc tggttagtta 720 gggatagacg tcctggttca actccttatg tattccgaga ggcattcaat atgtttgaaa 780 atgaacccag tacagccact attaaacagg agttgagaga tcgtttgcag gtgttacatc 840 ggttcagtgc gactgttaca ggtggacaat atacgtctaa ggaacaagct gtcatcaaga 900 ggttctggaa gttgaatcat catgtcactt ataatcatca ggagcaagct aaatatgaga 960 accatactga aaatgctttg ttattgtata tggcgtgtac tcatgccagt aatccagtgt 1020 atgccacatt aaaaatcaga gtgtatttct acgattcagt acaaaattaa taaagcttaa 1080 attttatatc tgtaaattgt tgtacatatt cagttccttc gaatacatta tacagtacat 1140 gatctactgc tctaattaca ttgttaattg atattacacc caaattatct atgtacttca 1200 acacttgagt cctaaatacc ctcaagaaat gcaaagtctg aggatgtaag cgagtccaaa 1260 tcttgaaaga gaggaagcac ttgtgtatgt gcagttgatt cctgaggttg tggttgaatt 1320 gtatctgtaa agttattata tcctgatcca tgttgaatgg ccgttgcgcg tgtgtcgtga 1380 ttttgaaata taggggattg ggcactgtcc aggtatacgc gccattcctt gcctgagctg 1440 cagtgatggt gtcccctgtg cgtgaatcca tgatttgcac accccaatgc gacgtaaata 1500 gaacacccgc agttcagatc aatcctcctc cggcgaggtg ctctcctctt ctctgatctg 1560 tgtcgcacct tgatgggtac ctgagtagag tgggccgtag agggtgacga aggttgcatt 1620 tttaattgcc caggctttta gggcagcatt cttgtcctcg tctaaatact cggtgtatga 1680 tgacgttggg cctggattgc agaggaagac tgttgggata cctcctttaa tttgaattgg 1740 tttcccgtac ttggtgttgc tttgccagtc cctttgggcc cccatgaatt ctttaaagtg 1800 ctttaggtag tggggatcca cgtcatcaat cacgttgtac caggcgctgt tgctgtaaac 1860 cttggggctt aagtcaagat ggccgcaaag gtaattgtga tgtgggctca atgacctggc 1920 ccacatggtc ttccctgtcc tgctgtcccc ctcgatgaca atactcatgg gcctccacgg 1980 ccgcgcagcg gaatccctga cgttctcggc agcccattcc tcgagttctt ccggaactcg 2040 atcaaatgaa gaagaaagaa aaggacaaac agattcctcc aacggaggac taaaaagccc 2100 atctaaatta ctatttaaat tatgaaattg taaaacaaaa tctttgggag ctttctccct 2160 taatatagac aaggccgatg atttagagcc tgagttgatt gcctcggcat atgcgtcgtt 2220 ggcagattgg caacctcctc tagctgatct tccatcgacc tggaaaactc cataatcaac 2280 gacgtctccg tctttctcca tgtaggtctt gacgtctgat gagctcttag ctccctgaat 2340 gttcggatgg aaatgtgctg acctagttgg ggatacgagg tcgaagaatc gttgattcgt 2400 gcactggtat ttcccttcga actggatgag gacgtggaga tgagggctcc catcttcgtg 2460 tagctctctg caaattctga taaacagttt gttggttggt gtttctagtg cttgaatctg 2520 ggaaagggct tcttctttgg ttagagagca gtgtgggtat gtgaggaaat aatttttgct 2580 atttatttta aaacgttttg gtggtgccat atttacaaat atgcccttgt accccgattc 2640 ggagagaaat cttctttgca gtcaatcggt gtaatggggt acaatatata ctccttcatc 2700 tttttaattt tgaatttcaa aattcaaaat tcaaattggt aaagcggcca tccgtataat 2760 att 2763 //