ID AB506798; SV 1; linear; genomic RNA; STD; VRL; 3396 BP. XX AC AB506798; XX DT 10-JUN-2009 (Rel. 101, Created) DT 10-JUN-2009 (Rel. 101, Last updated, Version 1) XX DE Cucumber mosaic virus RNA 1, complete sequence, strain: LiCB. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3396 RA Chung B.N., Yoon J.Y.; RT ; RL Submitted (05-JUN-2009) to the INSDC. RL Contact:B N Chung National Institute of Horticultural & Herbal Science, RL Horticultural & Herbal Crop Environment Division; 540-41, Tap-dong, RL Kwonsun-gu, Suwon 441-440, South Korea XX RN [2] RA Chung B.N., Yoon J.Y.; RT "Characterization and sequence analysis of two cucumber mosaic virus RT isolated from lily"; RL Unpublished. XX DR MD5; 10df7601c4d6612fff2aa2a5afbfeebd. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3396 FT /organism="Cucumber mosaic virus" FT /segment="RNA 3" FT /strain="LiCB" FT /mol_type="genomic RNA" FT /country="South Korea" FT /isolation_source="Lily" FT /db_xref="taxon:12305" FT 5'UTR 1..94 FT CDS 95..3076 FT /codon_start=1 FT /transl_table=1 FT /gene="1a" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:C4TP49" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C4TP49" FT /protein_id="BAH70363.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTQPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDH FT GVIPELNCQWRKIRSAFSETEDVTPLVGKLNSTVFSRVRKFKTLVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISMWFTALTR FT PVRVFFSNVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAHVAAQ FT AVTDGKILAAQKAEKLAEKLAQPVREVSDSPETSSQTSDDTADVCGEEREVSELDSLSA FT QTRSPITRIAGRATAMLEYAAYEKQLHDTTVSNLKRIWNSAGGDDRRNSLEGNLNFVFD FT TYFSVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKSDGELYIVNGECVICNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFNS FT SDSKEACAFVRTADSVLLNECPSVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPRGTHSKYTKW FT VSQSTVRRSVTSRAIASVTVVDLDPSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEHCGVLNGDLIAEC FT VARA" FT 3'UTR 3077..3396 XX SQ Sequence 3396 BP; 840 A; 768 C; 826 G; 962 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcctc tgtaaaacta ccctttgaaa 60 acctctcttc tctaatcttt tctttgtaat tcctatggcg acgtcctcgt tcaatatcaa 120 tgaattggta gcctcccacg gcgataaagg actactcgcg accgccctcg ttgataagac 180 agctcatgag cagctcgagg agcaattaca gcatcaacgt aggggccgta aggtctacat 240 ccgaaacgtt ttgggtgtaa aggattccga ggtcatccgg aatcggtatg gaggaaagta 300 cgacctccat cttacccagc aggagtttgc tccccacggc ctagctggtg ccctccgctt 360 gtgtgaaact ctcgattgtc tagactcttt cccttcatca ggtctgcggc aggacctcgt 420 cttagacttc ggaggaagtt gggtcacaca ttacctccgc ggacataacg tacactgttg 480 ttccccttgt ttgggtatcc gcgataagat gcgccatgcg gaacgtttaa tgaacatgcg 540 caagatcatc ttgaacgatc cacaacagtt cgatggtcgg cagccggatt tctgcactca 600 accggctgcg gattgcaaag tacaagccca ctttgctata tctattcacg gaggttatga 660 tatgggcttt agaggattat gtgaagcgat gaatgctcac ggaaccacta ttttgaaggg 720 aacgatgatg ttcgatggtg cgatgatgtt tgacgaccac ggtgtaatac ccgaacttaa 780 ttgtcagtgg aggaagatca ggagtgcttt ctccgaaact gaagacgtca cgccactggt 840 tggtaagctt aattccacag ttttctcccg cgtgcggaag ttcaagacgc tggtagcctt 900 tgatttcatc aacgagtcta ccatgtctta tgttcatgat tgggagaaca taaaatcttt 960 tcttacggac cagacttatt cgtaccgagg gatgacttac ggtatcgaac gttgcgttat 1020 tcacgctggt attatgacgt acaagattat cggcgtacct gggatgtgtc cacccgaact 1080 cattcgacat tgtatttggt tcccctctat taaagactat gttggtctaa agattcccgc 1140 gtcgcaggac ttggttgagt ggaaaacagt gcggatttta acgtcaacat tacgtgagac 1200 tgaagagatt gctatgaggt gttataatga taagaaagcg tggatggaac aattcaaggt 1260 tatcctaggt gttctatccg cgaaatcatc taccattgtt attaatggta tgtccatgca 1320 atctggcgag cgaatagata ttaatgacta tcattacatc ggtttcgcca ttcttcttca 1380 cacaaaaatg aagtatgaac aacttggaaa aatgtatgat atgtggaatg cttcgagtat 1440 ttcgatgtgg ttcaccgcgc tgactcgccc ggtgcgcgtg tttttctcca atgttgttca 1500 cgcactattc ccgactttga gaccccgcga ggaaaaagaa ttcctgatca agctctccac 1560 cttcgtgact tttaatgaag agtgctcatt tgacggtgga gaggaatggg acgtgatatc 1620 atccgctgca catgttgccg cgcaggctgt taccgatggg aagattttgg ctgcgcagaa 1680 agccgagaag cttgctgaaa agcttgcaca acccgtaaga gaggtatcgg acagtcctga 1740 gacgtcatct caaacgtctg atgatactgc tgatgtttgt ggagaggagc gagaggtttc 1800 ggaactcgac tccttatcag ctcagacgcg ttcccccatc actagaattg ccggaagagc 1860 tactgctatg ttagagtatg ctgcttatga gaaacaatta cacgacacca cggtgtctaa 1920 tttaaaacgt atttggaact cggcgggcgg tgatgacaga agaaactccc tcgagggtaa 1980 tctgaatttt gtttttgata cgtatttctc cgttgatcct atggtgaaca ttcatttctc 2040 cacaggtcgg tggatgcgtc ctgtgcccga gggtattgtt tattctgttg gttataatga 2100 acgcggttta ggtccgaagt ctgatggaga gctttacatt gtcaatggtg aatgcgtgat 2160 ttgtaacagt gagtctttat ctactgtcac gcgttctctt caagctccga ccgggaccat 2220 tagtcaagtt gacggagttg ctggttgcgg gaaaaccaca gcaattaaat ccatttttga 2280 gccgtccact gacatgattg ttaccgcgaa caagaagtcc gcccaagatg tacgtatggc 2340 acttttcaat tcgtcggatt ccaaagaagc ttgcgccttt gttcgaacag ccgattccgt 2400 cctacttaat gaatgtccga gtgttagtag ggttttggtt gatgaggtcg ttttgctaca 2460 ctttggtcaa ttatgtgccg tcatgtctaa gttgaaggct gtgcgagcta tatgttttgg 2520 ggattcggag cagattgctt tttcctcgcg cgatgcctcc tttgacatgc gtttctctaa 2580 gattattcct gatgaaacta gtgatgctga caccacattc cgtagcccac aagatgttgt 2640 accgcttgtg cgtttaatgg ctacgaaggc ccttccgaga gggacccatt caaaatacac 2700 gaaatgggtt tctcaatcta cagtgagaag atctgttaca tctcgtgcca tcgctagcgt 2760 gacagtggtt gacttggatc cttccaggtt ctacataact atgacccaag ctgataaggc 2820 ctcactgatt tcaagggcga aagagatgaa tctaccaaag actttctgga atgaaaggat 2880 taaaaccgtg catgagtctc aaggtatctc cgaagaccac gttactttgg taagattaaa 2940 gagtacaaaa tgtgacctgt ttaaacagtt ttcttactgt ctcgttgcac tgactagaca 3000 caaggtcaca ttccgctacg agcactgtgg tgtgttgaac ggcgatttaa tcgccgaatg 3060 tgttgctcgt gcctagcggc ctccctcccg cgggagaccg ctcctccctc cgttcatggc 3120 gggagctgag ttggcagtat tgctctaaac tgtctgaagt cactaaacac agtgtgtcac 3180 tgtacacatt gtggtgaacg ggttgtccat ccagcttacg gctaaaatgg tcagtcgtgg 3240 agaaatctac gccagtagac ttacaagtct ctgaggcacc cttgaaacca tctcctaggt 3300 ttcttcggaa ggacttcggt ccgtgtactt ctagcacaat gtgctagttt agggtacggg 3360 tgtcccccac tttcgtgggc cttcaaaagg agacca 3396 //