ID   AB675463; SV 1; linear; viral cRNA; STD; VRL; 1832 BP.
XX
AC   AB675463;
XX
DT   15-APR-2012 (Rel. 112, Created)
DT   27-SEP-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Hokkaido virus Small gene for nucleocapsid protein, complete cds, isolate:
DE   Kitahiyama128S/2008.
XX
KW   .
XX
OS   Hokkaido virus
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes;
OC   Bunyavirales; Hantaviridae; Mammantavirinae; Orthohantavirus;
OC   unclassified Orthohantavirus; unclassified Hantavirus.
XX
RN   [1]
RP   1-1832
RA   Kariwa H., Ozaki Y., Hagiya T., Sanada T., Seto T., Taylor K., Ivanov L.I.,
RA   Saasa N., Yoshii K., Tsubota T.;
RT   ;
RL   Submitted (13-OCT-2011) to the INSDC.
RL   Contact:Hiroaki Kariwa Hokkaido University, Graduate School of Veterinary
RL   Medicine; Kita-18, Nishi-9, Kita-Ku, Sapporo, Hokkaido 060-0818, Japan
XX
RN   [2]
RX   DOI; 10.1099/vir.0.045377-0.
RX   PUBMED; 22791608.
RA   Sanada T., Seto T., Ozaki Y., Saasa N., Yoshimatsu K., Arikawa J.,
RA   Yoshii K., Kariwa H.;
RT   "Isolation of Hokkaido virus, genus Hantavirus, using a newly established
RT   cell line derived from the kidney of the grey red-backed vole (Myodes
RT   rufocanus bedfordiae)";
RL   J. Gen. Virol. 93(Pt 10):2237-2246(2012).
XX
DR   MD5; 674ba7a288d4beaca5122651232c9c13.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1832
FT                   /organism="Hokkaido virus"
FT                   /segment="Small"
FT                   /host="Myodes rufocanus"
FT                   /isolate="Kitahiyama128S/2008"
FT                   /mol_type="viral cRNA"
FT                   /country="Japan:Hokkaido, Kitahiyama"
FT                   /isolation_source="Lung of Myodes rufocanus bedfordiae"
FT                   /collection_date="23-Oct-2008"
FT                   /db_xref="taxon:1100878"
FT   CDS             43..1344
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="Small"
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:I0J0W5"
FT                   /db_xref="InterPro:IPR002214"
FT                   /db_xref="UniProtKB/TrEMBL:I0J0W5"
FT                   /protein_id="BAM11249.1"
FT                   /translation="MSDLKDIQEDITRHEQQLVVARQKLRDAEKAVEMDPDDVNKNTLQ
FT                   ARQQTVSALEDKLADFKRRMADVVSRKKMDTKPADPTGIEPDDHLKERSSLRYGNVLDV
FT                   NAIDIEEPSGQTADWYTIGVYIIGFTLPIILKALYMLSTRGRQTVKENKGTRIRFKDDT
FT                   SFEDINGIRRPKHLYVSMPTAQSTMKAEEITPGRFRTIVCGLFPTQIQVRNIMSPVMGV
FT                   IGFSFFVKDWPERIKEFMEKECPFIKPEVKPGTPAKEVEILKRNKVYFMQRQDVLDKNH
FT                   VPDIDKLIDYAASGDPTSPDNIDSPNAPWVFACAPDRCPPTCIYVAGMAELGAFFSILQ
FT                   DMRNTIMASKTVGTAEEKLKKKSSFYQSYLRRTQSMGIQLDQRIILLYMLEWGKEMVDH
FT                   FHLGDDMDPELRGLAQALIDQKVKEISNQEPLKI"
XX
SQ   Sequence 1832 BP; 609 A; 340 C; 397 G; 486 T; 0 other;
     tagtagtaga ctccttgaag agctactacg aaaaagactg gaatgagtga cttgaaagat        60
     atccaggagg atataacccg ccatgaacaa caacttgttg ttgcccggca aaagcttaga       120
     gatgcagaga aagcagtgga aatggaccca gatgacgtta acaagaacac actgcaagca       180
     cggcaacaaa cagtgtcagc attggaagat aaacttgcag acttcaagcg aagaatggca       240
     gatgttgtgt ccaggaaaaa aatggatact aagcctgctg acccgactgg gattgaacct       300
     gatgaccacc tcaaggagag atctagcctc agatatggga atgtccttga tgtgaatgca       360
     attgacatag aagagcctag tggtcaaaca gcagactggt ataccatagg agtatatata       420
     atagggttta cactacctat tattctaaaa gcactttaca tgttgtcaac ccgaggacgt       480
     caaactgtta aagaaaacaa agggacgagg atccgattta aggatgatac atcatttgaa       540
     gacatcaacg ggattagaag gccaaaacat ctgtatgtgt ccatgcccac agctcaatca       600
     acaatgaagg ctgaagagat tacacctggg aggtttcgca ccatagtctg tggccttttc       660
     ccgacacaaa ttcaagttcg gaatataatg agtcctgtca tgggggttat tggattctca       720
     ttctttgtta aggactggcc tgagcgaatt aaagaattca tggagaagga gtgcccattt       780
     ataaagccgg aggtgaagcc aggaacccca gcaaaagagg tggagatttt aaaaagaaac       840
     aaagtttact tcatgcaacg gcaagatgtg cttgataaga atcatgtccc cgacatcgat       900
     aaactaattg actatgcagc ctctggagat cccacgtcac ctgacaatat tgactcccca       960
     aatgccccat gggtgtttgc atgtgcccct gataggtgcc caccaacatg tatctatgtt      1020
     gcaggaatgg cagagctagg ggcattcttt tccatcctgc aagatatgag aaacaccata      1080
     atggcatcta aaactgttgg gacagctgaa gaaaagctaa agaaaaagtc atctttctac      1140
     caatcatatt tgaggcgtac tcaatcaatg gggattcaac tcgaccaaag gataatcttg      1200
     ttatacatgc ttgagtgggg aaaagagatg gtagatcact ttcatctcgg ggatgatatg      1260
     gatcctgagc ttagagggct ggcacaggca ttgattgatc agaaagtaaa ggaaatttcg      1320
     aaccaggaac cactaaagat atgagagaac atttatagaa tactaacccg taggttaagg      1380
     ataagttagg tattactaac atgcagacat acaatataat caggttattt agatcagcag      1440
     ttttaggttt atgtaggcat aggggttatc agggataatt attatataag ctatggggtt      1500
     ataactggaa tttaagcatt atagccttta taagattact actaatgaca gttatgaatg      1560
     tattattgca cttacactgc tgcagcattg ttgaaccagc attaaataga tatatagcca      1620
     tattagttgg gatttagtat atttttacag atgttattca tattagtggg cccatacatg      1680
     tgaaactgag ctatcctttt cttttcacca ctttatctac ccaacatcta cctcagtgta      1740
     cttatatata tgcaattagc atatatataa gtacacaaat tactacctca acatgctgat      1800
     ttcttgattg cttttcaagg agcatactac ta                                    1832
//