ID AF020051; SV 3; linear; mRNA; STD; VRL; 6405 BP. XX AC AF020051; AF112118; XX DT 06-JAN-1999 (Rel. 58, Created) DT 19-JUN-2004 (Rel. 80, Last updated, Version 6) XX DE Blackcurrant reversion virus RNA2 polyprotein mRNA, complete cds. XX KW . XX OS Blackcurrant reversion virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 3296-6405 RX DOI; 10.1016/S0168-1702(97)00116-0. RX PUBMED; 9617765. RA Latvala S., Susi P., Kalkkinen N., Lehto K.; RT "Characterization of the coat protein gene of mite-transmitted blackcurrant RT reversion associated nepovirus"; RL Virus Res. 53(1):1-11(1998). XX RN [2] RP 1-6405 RX DOI; 10.1016/S0168-1702(99)00105-7. RX PUBMED; 10564755. RA Latvala-Kilby S., Lehto K.; RT "The complete nucleotide sequence of RNA2 of blackcurrant reversion RT nepovirus"; RL Virus Res. 65(1):87-92(1999). XX RN [3] RP 1-6405 RA Latvala-Kilby S., Lehto K.; RT ; RL Submitted (19-AUG-1997) to the INSDC. RL Laboratory of Plant Physiology and Molecular Biology, Department of RL Biology, University of Turku, Turku 20014, Finland XX RN [4] RC Sequence update by submitter RP 1-6405 RA Latvala-Kilby S., Lehto K.; RT ; RL Submitted (09-DEC-1999) to the INSDC. RL Laboratory of Plant Physiology and Molecular Biology, Department of RL Biology, University of Turku, Turku 20014, Finland XX RN [5] RC Sequence update by submitter RP 1-6405 RA Latvala-Kilby S., Lehto K.; RT ; RL Submitted (30-OCT-2000) to the INSDC. RL Laboratory of Plant Physiology and Molecular Biology, Department of RL Biology, University of Turku, Turku 20014, Finland XX DR MD5; 7644d2e74435c709dcca8deb115df5c2. DR EuropePMC; PMC3314827; 22218961. XX CC On Oct 30, 2000 this sequence version replaced gi:6540581. XX FH Key Location/Qualifiers FH FT source 1..6405 FT /organism="Blackcurrant reversion virus" FT /segment="RNA2" FT /host="Ribes nigrum L." FT /lab_host="Chenopodium quinoa" FT /mol_type="mRNA" FT /db_xref="taxon:65743" FT CDS 162..5042 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q9YK98" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q9YK98" FT /protein_id="AAD09329.2" FT /translation="MSESGNTTSMPGCGRMCALRSTWSKRAFLVACKDGALTSDGRCPQ FT YGCGALVSITKGVQQPKKTASAKVVKCLCWVQPARWCEKHSKGPASPNGSVTTKRSNSA FT RAAPAPLPYKKQTCDVVVTVGPLELVYPALVSEELPTPVAATPTKVEEVPIPELPLWLA FT PAWMVEQPYAATPEVLCLTQREEFALLKKRLTRKGKLLQRRATHARFEARAALARVRAA FT TQRKVEEVTALVIKGRRILAAHQLLRELEEVAPLSQAQEQLVASSCAAAAARQEECASF FT LRRAKAWRKSISATPPVAFATAVASKVVSATMPWAHLGLSLGGLLAVPTLDGTLGAKQW FT NAKTIATWVLKPVVSCVQSVHAKVRDWLHSQPEVGVTNTKVPLVLPEVCLGVLSPPSLS FT EEIVDNPQETSQSGIWHPEMGVRNIYVFHDDSWETSPEEDENYTYTFSRQCGIPYLLVE FT GRGAEERKNTILGWDFSLHNDGEFEFLPSPEEGYTKELVTPVALEEEDKYSTASSCGFF FT SLDDVSSAITIQCPGLLSADADVHFFDGPGYRCSSRPRDFRPPVVRGCDYESRVKASIQ FT RKIENPLQERFITVLREKRKKNKKKEFHSFSACFAFKRKQIQWPPTPNEMVNEWEEYCI FT AQAWLPFEVVVTDEIEDVTPLYPGGRDYNCNSQLLFPLAPLSTVYCDDSCFHPNDGWTT FT DGNGKHFRLSPQFVLPDVPIPIVHRVTRQLPQFLYDLGIGDLTCNSGYQAENLQEEIQE FT RMEDRSEEKPVPSLDTLISKLSKRSTKVKGAGENRYADRHSLTEKAIFHQPGALSRMRS FT GKEKTIVAANHNSDQISVRMAECGKPVFTPLPRMSDEMLRKFLEKGLGSTSTVALDIGI FT QSHIPQGMPTVAFVNVMDTRIEDPLYSSLCGSYIDLGRDRAKTLCLPLVNFPMSKLAED FT VDDVLNGLMLCTHFQDSTKFGVGKPAFQYGTLEFQEFKPSAYSDFSRVRDNWDAIAKQQ FT NTPNDRILAGFSVLGAVSQAYNQALPVFKSVELVAPPKRKPVVATFQNPTTLGRSNTTR FT SFRMPTMDLPRSTGRDAPIPIVHRRNNNDVHGFDEATPARFSTCDSGLVADTTLAFAKM FT YQCKKDAKAGHVLATIDIQECVFEDNRRVALDWLAHGLASFKYDLQLTVDSNPFVGVTL FT GITVDAFDRLLPQISDEVIAVPLAFQLPTYLFPISKKGTFTQTIDFAAIAGYNFFPHVA FT AFGRPKIIVYIVSDNDLPASDTWMCLVELHMTRLESSTLACSPTLVLPQAFGGDLPLDL FT WRGPYTFPLGGGTKRLSTSLDIGTSTTTVSGWRTVSFPAAYALFLQGHGGSLVGEVVHT FT GSAAVSCALHLCISFGGAPPTLEEALVFPGFRLPSGEGKFHIKVQTPYGRLSTLTPDCA FT LYVYLAGGPIAVAPMSVPYQFCIHLERLVDDGAPPRTIGLIREFNWATINNFKSDDITF FT AIPARLSDLVLTCGDVTMSTNPLALLIGSCGFFRGNLTVVLEWATFLKAGDKEGTVQLT FT TCRGMINNVKGVRNAIQKKVVNLSLVGSVSRYLNVGDFTGFAQSGGQVGYDEIFLEFST FT NKAKQIRYLNINVELDENFELYGRTIIPLKNTAPAFASTSASAPNES" FT mat_peptide 3441..5039 FT /product="coat protein" XX SQ Sequence 6405 BP; 1562 A; 1382 C; 1555 G; 1906 T; 0 other; ttttcaaaag ttctctccta gaacttttcc cacctctttc ttgtcacttt tgctagtttc 60 tctctgtttt tctccattct tactagttgg tgttgttcgg ttgtttggct tccctgctct 120 ttttccttcc ttccttcgct tttgttttgg tttgctttac catgagtgag agtggtaaca 180 ccacatccat gcctgggtgt ggtagaatgt gtgctctgcg gagcacttgg tcaaaaagag 240 ctttccttgt tgcctgcaag gatggcgcac ttaccagtga tggtaggtgt ccgcagtatg 300 gttgtggggc tcttgtctcc attaccaagg gtgttcagca gcccaagaaa accgcttccg 360 caaaagtggt aaaatgcttg tgctgggttc aaccagcacg ctggtgcgaa aagcactcga 420 aggggcctgc aagtcccaat ggttctgtga ccaccaaaag gtcaaactct gcgcgtgcag 480 cgccagcccc gcttccttac aagaagcaaa cttgtgacgt ggttgtcaca gttgggccac 540 tagagttggt ttatccagct ctagtttctg aggagctacc cactcctgtc gctgccaccc 600 cgactaaggt ggaagaggtt cccattccgg agctgccctt gtggttggcc ccagcatgga 660 tggtggagca gccctatgct gctaccccag aggtcctctg cctcacccaa cgggaagagt 720 ttgcgctact taaaaagcgc cttacccgca agggtaagct tcttcaacgg cgtgccacgc 780 acgcgcgttt tgaggctcgg gctgcattag cccgtgtccg tgctgccacc caacgtaagg 840 tggaagaggt taccgccctt gtcatcaagg gcaggcggat tttggccgcc caccaactac 900 tccgtgagtt ggaagaggta gcccctctct ctcaagccca agaacaactt gtggcttctt 960 cttgtgctgc agctgcagca cgccaggagg aatgcgctag cttccttcgc cgtgccaaag 1020 catggcggaa aagcattagt gcaactcctc ctgttgcctt tgccacagct gtggcttcta 1080 aagtggtttc agccactatg ccttgggccc atcttgggct ctctcttggg ggacttttgg 1140 cagtccctac tttggatggc accctgggtg ctaagcagtg gaatgctaaa accattgcta 1200 catgggtttt gaagcccgtt gtttcttgtg tccaatctgt gcacgctaaa gtgcgcgact 1260 ggttacatag ccaaccagaa gtgggtgtta caaatactaa ggttcctctg gtgctaccag 1320 aggtctgctt gggggtctta tcgcctcctt ctttatctga agagatagtg gacaatccac 1380 aggaaactag ccagagtgga atctggcacc cagagatggg tgtaagaaat atctacgttt 1440 ttcatgatga ttcgtgggaa actagtccag aagaggacga aaactatacc tacaccttta 1500 gtcgacaatg tggtattcca tatttgttag ttgaaggacg gggcgctgaa gagcgtaaga 1560 atactattct cggatgggat ttctctctcc ataacgatgg ggagtttgaa ttccttccta 1620 gtcctgaaga gggttatact aaggaactgg ttacaccagt cgctcttgaa gaggaggata 1680 aatactccac agcgagcagt tgtggattct tctccctgga cgatgtttca tctgcgataa 1740 ccatacaatg tccagggctt ttgagtgccg atgctgatgt tcattttttt gatggaccag 1800 gctatcgatg ctcttcgcga ccacgtgatt ttcgtccacc cgtggtgaga ggctgcgact 1860 acgaaagtag agttaaagct tctatccaaa ggaaaatcga gaatcccctg caagaacgtt 1920 ttattactgt attgcgcgag aagaggaaga aaaataaaaa gaaagagttt cattccttct 1980 ccgcctgctt cgcttttaag aggaagcaaa tacagtggcc tcctacacct aatgagatgg 2040 ttaatgaatg ggaggaatat tgcattgcac aggcgtggtt gccttttgaa gttgtagtga 2100 cagacgaaat tgaagatgtc actcctttgt atcccggtgg gagggattac aattgtaaca 2160 gtcagttgct ttttccgcta gctccattgt cgacggtata ttgtgatgat tcgtgtttcc 2220 atcctaacga cgggtggacg actgatggaa atggcaaaca tttccgactt agtccacaat 2280 tcgttttacc cgatgtccct atacctatag tgcaccgcgt tacacgccag ttaccgcagt 2340 ttttgtatga tttgggtatc ggtgatctta cctgcaattc gggctatcaa gctgagaatt 2400 tgcaagaaga gatccaagaa cggatggaag atcgtagtga ggagaaacca gtgccaagct 2460 tagatactct tattagtaag ctttcgaaga ggagtaccaa agtaaagggc gcgggtgaaa 2520 atcgctatgc tgatcgtcac agtctaacag aaaaggctat tttccaccaa cccggtgcgc 2580 tgagccgcat gcgctcgggt aaagaaaaaa caattgtggc agcgaaccat aactctgatc 2640 agatttcagt gcgtatggcg gaatgtggta aacctgtgtt tacaccacta ccgcgaatgt 2700 ctgatgaaat gctgagaaaa tttctagaga aagggttagg ttctacttct acagtagcat 2760 tggatatcgg tatacaaagc catattccac aaggaatgcc tactgttgcg tttgttaatg 2820 ttatggacac acgtattgag gatcctttgt attcttcatt atgtgggtcc tacattgatc 2880 ttggaaggga tcgggctaaa acgctttgct tacctctcgt caatttccca atgagcaaat 2940 tagcagagga tgttgatgat gtgttaaatg gcttgatgct gtgtacacat tttcaagatt 3000 cgactaagtt tggggttggc aaacctgctt tccagtatgg cacattagaa tttcaagaat 3060 tcaaaccttc tgcctactcg gatttttccc gtgtgaggga taattgggat gcgattgcta 3120 aacaacagaa tacacctaat gatcgcattc tagcaggatt ttctgttctt ggtgctgttt 3180 cacaagcata taatcaagct ctaccagtgt tcaagtctgt ggaacttgtg gcaccgccca 3240 agagaaagcc agtggtggct acttttcaga atccaaccac attgggtagg agtaacacaa 3300 ctcgtagctt ccgcatgcct actatggatt tgccacgaag tacggggcgt gatgctccaa 3360 ttcccatagt gcatcggcga aataacaatg atgtacatgg atttgatgaa gctacaccag 3420 ctcgtttttc aacttgtgat tctggattag tggccgacac aacgctcgcc tttgcgaaaa 3480 tgtatcaatg caaaaaggat gctaaggctg ggcacgtttt ggccactatt gatattcagg 3540 aatgtgtctt tgaagacaat agacgagtgg ctctggattg gctagcacac ggtcttgcta 3600 gcttcaaata tgatctacaa ttgaccgtag attcgaaccc tttcgttggg gtgacattgg 3660 ggattacagt agatgctttc gatcggcttc taccccagat ttctgatgag gtgattgcag 3720 tgccattggc atttcaatta cctacttatt tgttcccgat ttcgaagaag gggactttca 3780 cccaaactat tgattttgcg gcaatagctg ggtataattt ttttccgcat gtagcagctt 3840 ttggtcggcc aaaaattatc gtgtatatag tgtccgataa tgatttgcca gcgagtgaca 3900 cgtggatgtg tctcgtcgag ttgcatatga cgagactcga atcatctacg ttagcttgca 3960 gtcccaccct cgttttgcct caagcatttg ggggtgattt accattagat ttgtggcgtg 4020 gcccctatac cttcccatta ggggggggta ccaagcgttt atccacttcg ttggatattg 4080 ggacgtcgac aacgaccgtt agtgggtggc gtactgtttc ttttcccgct gcttatgctc 4140 ttttcttaca agggcatggt ggtagtttag ttggtgaggt ggtgcatact ggttcggccg 4200 ctgtgtcatg tgcacttcac ctttgtatat cctttggcgg tgcccctcct actttggagg 4260 aagcactcgt ctttcctggt tttcgtttac cttccggtga gggcaaattt catattaagg 4320 tacaaacgcc atatgggcga ttaagcactt taactccaga ctgtgcctta tatgtttatt 4380 tagccggagg acctattgct gttgcaccaa tgtcggtgcc ctatcaattc tgcatccatt 4440 tggagagatt ggtagatgat ggagccccac ctcgaacgat tggtttaatt cgagagttta 4500 attgggctac cataaataat tttaagagtg acgatataac gtttgccatt cctgcgcgtt 4560 tgtctgatct tgtgcttact tgtggtgatg tcactatgag tactaaccct cttgccttat 4620 taattggtag ttgtggtttc ttccggggca atctcacagt tgtcttggaa tgggccacct 4680 tcctaaaggc aggagataaa gagggcacag ttcagttgac tacatgtcgt ggcatgatta 4740 ataatgtcaa gggtgtgcga aatgccatcc agaaaaaagt cgtcaactta tctctcgtcg 4800 gatctgtctc ccgctacctc aatgttgggg atttcaccgg ttttgcacaa tctggtgggc 4860 aagtggggta tgatgagatt tttctcgagt tcagcacgaa taaagctaag caaattcgtt 4920 atttaaatat aaatgttgaa cttgatgaaa atttcgagct gtatggtcgt acgatcatac 4980 ctcttaagaa tacagctccc gctttcgcaa gtacatctgc tagtgctccc aacgaaagtt 5040 gatagcgatg tgcacgttta ggagataaat agctagtatc tttctactcg gattcccctc 5100 tgtcgtcata gaggggtttc aagggatgtc atcatcagcg ttggctatgg ccacgatgtg 5160 aatcatggag taacgcacca tgagtccccc gataattcgg tcccaagaga ctacacttgg 5220 gttgaaaatg atggtaaacc atccgtatgg gtctatgctc atatgttaag agttgtctta 5280 ctgtatatgg cttctacata aggtcggtac ccctgaaata gggatcctgt tcgcgtgcgt 5340 ggttgtagga gtgctaagta tagttgcaac ataaatatga cttgggagac aaagtctcat 5400 ccaccttgga accgcacagg gatataactc aaagcggaat ggtagtaaac tacttgccct 5460 atcagtaggg atgggaacgc tcattattag caaaccctta ccctggacat taggtgcttc 5520 agcaatatga ggcgaaagac tagggagaaa gttcctatgg acgtgtaatt cgtccactcg 5580 agatgggagt catgccatcg tgttatctta ttttcttgta ttgtatttca atttcaaaga 5640 aagttgctgg atctaaacca gacccaggtg agtggaacct tctgcgtcca ctcggtttgg 5700 tattttacga ttaaaatacc caggtctact gcttccgagc ctgattaaaa tcttaaagcg 5760 gccatcgttc agtacttgct ggcatggtga catgagtgat gatgctttat gaatcatcaa 5820 atagtttctt tgtttctatt tctgggaaat ccttttggag agtgcccatg agaataatga 5880 agcgtttagt acacgatata gtactatctc tgttccagga gattgcgccg gaaatatagt 5940 cgatcatttt atgatcaagg tatttctgga tgggctcgtt gcgaagagtt ttcgctcaag 6000 gttcacatga ctgtaaattg taagtgtact caagatgttt ctagtctagg cagctagatg 6060 cattggatga ggtcccgatt gatacggggg gataatcaat cccagcttac ggtgtgtgcc 6120 gacttatatg gaagtgtcca tatcgcattt tgcttgtttt tagacataaa taagcactct 6180 ttactgcgtg taatacgctg gtgtctcatt atatactagc gttgcagcgc taggactacc 6240 taagacaacc gtattatacg tttgctttat ttatttttgc tactcctgtt tagcaggtcg 6300 tgccttcagt aagcacacaa aaatattttc catttttagg ttttggttaa gagtcatttt 6360 attgagcact tttcttttag agaatagagt ctgaaatgtc ctttc 6405 //