ID AF218798; SV 2; linear; genomic RNA; STD; VRL; 5695 BP. XX AC AF218798; XX DT 19-JAN-2000 (Rel. 62, Created) DT 22-APR-2003 (Rel. 75, Last updated, Version 2) XX DE Barley yellow dwarf virus-PAS PAV-129, complete genome. XX KW . XX OS Barley yellow dwarf virus PAS OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5695 RA Beckett R.J., Miller W.A.; RT "Sequences of novel luteovirus and polerovirus isolates"; RL Unpublished. XX RN [2] RP 1-5695 RA Beckett R.J., Miller W.A.; RT ; RL Submitted (23-DEC-1999) to the INSDC. RL Plant Pathology, Iowa State University, 474 Bessey Hall, Ames, IA 50011, RL USA XX RN [3] RC Sequence updated to remove 2 terminal N's RP 1-5695 RA Beckett R.J., Miller W.A.; RT ; RL Submitted (21-APR-2003) to the INSDC. RL Plant Pathology, Iowa State University, 474 Bessey Hall, Ames, IA 50011, RL USA XX DR MD5; 19268a21029d59ebe31a453d79898f3e. DR EuropePMC; PMC112095; 10846080. DR EuropePMC; PMC2583970; 18937850. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4722956; 25858272. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX CC On Apr 21, 2003 this sequence version replaced gi:6715477. XX FH Key Location/Qualifiers FH FT source 1..5695 FT /organism="Barley yellow dwarf virus PAS" FT /serotype="PAV-129" FT /mol_type="genomic RNA" FT /db_xref="taxon:2169985" FT CDS join(139..1155,1155..2744) FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P1-P2 fusion FT protein" FT /note="low-abundance product derived from -1 ribosomal FT frameshift" FT /db_xref="GOA:Q9J1A8" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q9J1A8" FT /protein_id="AAF26429.1" FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEFALKEDEIEEARSLMRLLTAQKAKTGVVEAWTD FT FFVKSRGGVYAPLSCEPSKAELEAKADKLERLLEDMHKFEVQAAKKYIKEKGRGFINCW FT NDLRSRLKLVKEVNEEAKDNIKAASKIGVEFSAPTNIQDLYAFTKVEKVETGLMKEVTK FT MVHGEETKHMEPITEDMRSIKDTAEDREAASKWITEVVKLKNSTLSADELSLATIARYV FT ENIGEKYKLDIASKTYLKQCAMMSVPIPTQKDIKMKMVIQSPAARAARERVAVLDSQGF FT LEGLCAASGFESPFSLLRLPEIKVTDGARLRKVSSNIRYLTQTHLGLVYKAPNASLHNA FT LVAVERRVFTVGKGDKAIYPPHPEHDIFTETMDYFAESIIDKVGYCKTYPAQQLALSYS FT AGKRSQYFKAIESLKKEPYQQKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT FT RLKFNEKKIMHAIDSVFRSPTVLSGYDNFTQGRIIASKWQKFASPVAIGVDASRFDQHV FT SEQALKWEHGIYNGIFGDTELATALEHQLVNNIKMFVEDKMLSFQVRGHRMSGDINTSM FT GNKLIMCGMMHAYFKMLGVEAELCNNGDDCVIITERANEKLFDGMYDHFLKYGFNMVTE FT APVYELGELEFCQSKPVRIDGKYRMVRRPDCIGKDSCTLLSMLNEADVKSYMSAVAQCG FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFKETPITSDNR FT MSYWESFGVDPKIQQLVERYFDDLTVSAQLQSVKVTSPHLQSILLSIPENNSQNEY" FT CDS 139..1161 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P1" FT /note="ORF1" FT /db_xref="GOA:Q9J1A9" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q9J1A9" FT /protein_id="AAF26424.1" FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK FT AHDAFVNMCFGHIADIEDFEAELAEEFALKEDEIEEARSLMRLLTAQKAKTGVVEAWTD FT FFVKSRGGVYAPLSCEPSKAELEAKADKLERLLEDMHKFEVQAAKKYIKEKGRGFINCW FT NDLRSRLKLVKEVNEEAKDNIKAASKIGVEFSAPTNIQDLYAFTKVEKVETGLMKEVTK FT MVHGEETKHMEPITEDMRSIKDTAEDREAASKWITEVVKLKNSTLSADELSLATIARYV FT ENIGEKYKLDIASKTYLKQCAMMSVPIPTQKDIKMKMVIQSPAARAARERVAVLDSQGF FT " FT CDS 2858..4810 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein P5" FT /note="translated from subgenomic RNA1 as a fusion protein FT via read-through of the coat protein (P3) stop codon; may FT play a role in systemic movement" FT /db_xref="GOA:Q9J1A7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q9J1A7" FT /protein_id="AAF26427.1" FT /translation="MNSVGRRGPRRANQNGPRRRSRRTIRPVVVVQPNRAGPRRRNGRR FT SGRRGPNSIPGSTGRTEVFIFSVDNLKANSSGTIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVKFQSHASAATSGAIFVELDTACKQSALGSYINSFTISKTASKSFRAEAINGKEF FT QESTIDQFWLLYKANGTTTDTAGQFIITINVSMLTPKXVDSSTPEPKPAPEPTPAPQPT FT PTPQPTPEPTPAPVPKRFFEYVGTPTGVISTRENSDSISVSKLGGQSMQYIENEKCESK FT VIDSFWSTNNNVSAQAAFVFPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS FT SGDNWGIGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDGVISFHVDATGT FT DACFYLAAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTFDESDVEAERIARHSETPAR FT HNHILLSESYEEPLPTIIDQGLCDVKTPEQEIVKVDEEDRQTVSTEPDIALQEYEAATA FT EIPDAEEDVLPSKEQLSVKPVDSSGTPLPKSKEPEVLGTYQGMNIYPEDVPPVARQKLR FT EAAKAPSTMLYDKAPKGSKSILSRFVEGNRSKATPAAPTVSTTSNMTREQLREYTRIRN FT SLGVTAAKEYKAQFQ" FT CDS 2858..3460 FT /codon_start=1 FT /product="coat protein P3" FT /note="ORF3; translated from subgenomic RNA1; occasional FT read-through of stop codon produces P3-P5 fusion protein" FT /db_xref="GOA:Q9J1A6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9J1A6" FT /protein_id="AAF26425.1" FT /translation="MNSVGRRGPRRANQNGPRRRSRRTIRPVVVVQPNRAGPRRRNGRR FT SGRRGPNSIPGSTGRTEVFIFSVDNLKANSSGTIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVKFQSHASAATSGAIFVELDTACKQSALGSYINSFTISKTASKSFRAEAINGKEF FT QESTIDQFWLLYKANGTTTDTAGQFIITINVSMLTPK" FT CDS 2901..3362 FT /codon_start=1 FT /product="movement protein P4" FT /note="ORF4; translated via leaky scanning on subgenomic FT RNA1" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9J1A5" FT /protein_id="AAF26426.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAQEEEGQILYLDQQA FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSFSHTRPPL FT RRALSLLNSTPRASNQPWVATLIPSPSAKLPPSPSEPRRLMGRNSKNQR" FT CDS 4940..5059 FT /codon_start=1 FT /product="P6 protein" FT /note="ORF6; highly variable sequence among BYDV isolates" FT /db_xref="GOA:Q9J1A4" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:Q9J1A4" FT /protein_id="AAF26428.1" FT /translation="MDDLHVIAVCMLAMTTFTAVGVVLGCCIGCIEALCGSKR" XX SQ Sequence 5695 BP; 1667 A; 1402 C; 1360 G; 1266 T; 0 other; tgaaggttga ccacctacac aaaaagactt tgtgcttgaa gtctacaacc cacctgtttt 60 gtattcagga agttgtctgc aacaacggtc aacagtacgt ctgacaccgt actgccccct 120 cccccccccc ccgccaacat gcttcttttt gaacttttga tcggcgctag cgtcaaagct 180 gtaaaagact tcatcagcca ctgctactcc agactaaaaa gcatatatta tgctttcaaa 240 agatggttga tggagatctc tgggcaattt aaggcccacg acgcttttgt caacatgtgc 300 ttcgggcaca ttgctgacat cgaagacttc gaggcggaac tcgctgaaga gttcgccttg 360 aaggaggatg aaatcgagga ggcgagaagc ctcatgcgtc tgctcaccgc ccaaaaagca 420 aaaactgggg tggtggaggc ttggaccgac ttctttgtga agtcgagagg cggggtttat 480 gccccgcttt cctgcgagcc ttccaaagca gagcttgagg ccaaagccga caagctcgaa 540 agactacttg aggacatgca caaatttgag gtgcaagcgg caaaaaaata cataaaagaa 600 aagggccgcg ggttcatcaa ctgctggaac gaccttcgtt ccagactcaa gttagtcaag 660 gaggtaaatg aagaggccaa agacaacatc aaggccgcct ccaagatcgg cgtggaattc 720 tccgcaccca ccaacatcca ggacctctac gccttcacca aggttgaaaa ggtcgagact 780 ggcctcatga aggaggtcac caaaatggtg cacggagaag aaaccaagca catggagccg 840 ataactgaag acatgcgctc catcaaggac accgcggaag accgagaggc cgcctccaag 900 tggataacgg aggtggttaa attgaaaaat tcaaccctgt ctgccgacga gctgtccctg 960 gccaccatcg cccgatatgt ggaaaacatc ggggaaaaat acaagctcga cattgcctcc 1020 aaaacatatc tcaagcaatg cgcaatgatg tctgttccaa ttcctactca aaaagacatc 1080 aaaatgaaga tggtgatcca gagccctgca gcacgagctg cgcgtgagcg cgtagctgtg 1140 cttgattctc agggttttta gaggggctct gtgccgcctc cggttttgaa agtccctttt 1200 ctctattaag actgccggag attaaggtca cagacggagc ccgtttacgt aaggttagta 1260 gtaatattag gtacctaacc caaacccacc tcggcttggt atacaaagcc ccaaatgcct 1320 ccctgcacaa tgccttggtt gcagtggaga gaagagtgtt tacagtagga aagggggaca 1380 aagctatata ccccccccac ccggaacatg acattttcac tgagactatg gactacttcg 1440 cagagtccat aattgacaag gtgggatact gtaaaacata ccctgcacag caattagctc 1500 ttagttatag tgcagggaag cggtcacaat acttcaaagc catagagtct ctcaagaagg 1560 aaccttatca acaaaaggac tctaatgtgc aggcattcct caagaaggag aagcattgga 1620 tgaccaaagc catcgccccg cgcctaatct gcccccgctc taagcggtac aatatcatcc 1680 ttggaactcg tttaaaattc aacgagaaga agatcatgca tgctatcgat agtgtgttta 1740 gatcccccac tgtgctttct ggctatgaca acttcactca aggaagaatc atagccagca 1800 agtggcaaaa gtttgcatca cccgttgcta tcggtgttga tgctagccgc ttcgaccaac 1860 acgtgtctga gcaggcgctt aagtgggaac acgggatata caatggcata tttggcgaca 1920 ctgaattggc cactgctctc gaacatcaac ttgtaaataa tatcaaaatg ttcgttgagg 1980 acaagatgct ttcatttcaa gtgagaggcc acagaatgtc cggggatata aacaccagca 2040 tgggaaacaa actgataatg tgtggcatga tgcacgcata ctttaaaatg ctgggtgttg 2100 aagctgaact gtgcaacaat ggggacgact gtgtcatcat cactgagaga gccaatgaga 2160 agctctttga tggcatgtac gaccacttcc taaagtacgg cttcaacatg gtgacggaag 2220 ccccagttta cgaactcggg gagcttgaat tttgtcaatc aaaacccgtc agaatagatg 2280 gcaaatacag gatggtgagg agaccagact gtattgggaa agatagctgc acacttctga 2340 gcatgttgaa tgaagctgac gtcaagagtt atatgtcagc tgtggctcag tgtgggctcg 2400 ttctgaacgc gggtgtaccc attctggaaa gcttctaccg ctgtttgtac agaagctctg 2460 ggtacaagaa agtaagtgag gaatacatca aaaacgtcat atcatatgga acagatgaac 2520 gccttcaagg tagacgtacc ttcaaggaga cacctatcac aagcgacaat cgaatgtcgt 2580 actgggaatc attcggagtt gaccctaaga tacaacaact cgtcgagcgg tacttcgacg 2640 atcttacggt aagtgcccaa ctccaaagtg tgaaggtgac atctccacat ctgcaatcaa 2700 tcctcctctc cattccggag aacaactcgc aaaacgaata ttaattacca aatcttagcc 2760 gggtttggga tagggtttat agtaagtatt ccctgtacat tagctctcac gtactttatt 2820 tacaataaag tttcagacac cactagagag gtggtgaatg aattcagtag gccgtagagg 2880 acctagacga gcaaatcaaa atggcccaag aaggcggagc cgtagaacaa ttcggccagt 2940 ggttgtggtc caacccaatc gagcaggacc cagacgacga aatggtcgac gctcaggaag 3000 aagagggcca aattctatac ctggatcaac aggcaggact gaggtattca tattctcagt 3060 cgacaacctt aaagccaact cttccgggac aatcaaattc ggccccagtt tatcgcaatg 3120 cccagcgctt tcagacggaa tacttaagtc ctaccaccgt tacaagatca caagtatccg 3180 tgttaagttt cagtcacacg cgtccgccgc tacgtcgggc gctatctttg ttgaactcga 3240 caccgcgtgc aagcaatcag ccttgggtag ctacattaat tccttcacca tcagcaaaac 3300 tgcctccaag tccttcagag ccgaggcgat taatgggaag gaattccaag aatcaacgat 3360 agaccaattc tggctactct acaaggcaaa tgggaccact actgacaccg ctggacagtt 3420 catcataacg ataaacgtca gtatgttaac tcccaaatag gtagactcct caacaccgga 3480 accgaaacca gcaccagagc caacaccagc cccacaaccc actccaaccc cacagcccac 3540 accagaacca actcctgcac ctgtccccaa gagattcttt gaatacgtcg gaactccaac 3600 cggcgtgatt tcaacgcgag aaaactctga cagtatttct gtcagcaagc ttggtggaca 3660 atccatgcag tacatcgaga atgagaaatg tgaatcaaag gttattgatt ccttctggag 3720 caccaacaac aacgtttctg cccaggcagc attcgttttt ccagtgccag aagggtcata 3780 cagtgttaac atttcgtgtg aaggctttca atccgttgac cacatcggtg gtaacgagga 3840 tggctactgg attgggctca tcgcttactc caattcatca ggagacaact ggggaatcgg 3900 taattacaaa gggtgcagtt tcaaaaattt cttggcaaca aacacttgga gacctggcca 3960 caaagatctc aagttgaatg actgccagtt cacagatgga caaatagttg aaagggatgg 4020 cgtgatatct tttcatgtag atgcaacagg tactgacgcc tgtttctacc ttgcagcccc 4080 caagacaatg aaaactgaca aatacaacta tgttgtttcc tatggagggt acacgaacaa 4140 acggatggag ttcggtacca tatctgtgac atttgatgaa tccgatgttg aggcagaacg 4200 cattgccagg cattcagaga ccccggctcg tcacaaccat atactcctat ctgagagtta 4260 cgaagagcca ttacccacca taatcgacca aggcttgtgt gatgtgaaaa ctcccgagca 4320 agaaattgtg aaggtggatg aagaggacag acagactgtt tccactgaac ctgatatagc 4380 attgcaggaa tatgaagctg ccacagctga aatacctgat gctgaagagg acgttttgcc 4440 ctccaaggaa caactgtctg tcaaacccgt ggactcatcc ggaacaccac ttccaaaatc 4500 taaggaacct gaagtacttg gaacgtatca gggtatgaat atatacccag aggatgtgcc 4560 accggtggct cgtcaaaagc tgcgcgaggc agcaaaagcc ccttccacca tgctttacga 4620 caaggccccc aaggggagca aatcaattct gtcgcgattt gtggaaggca ataggtccaa 4680 ggcaacccct gctgctccta cagtgtcaac tacttccaat atgacaagag agcagttgcg 4740 agagtacact cgtattagaa atagtttagg tgttaccgca gcaaaagagt acaaagcgca 4800 atttcagtga agattaacac cactaacaca agccgaatcc tgggaaacag gcagaactta 4860 ggttcgtaag ctcgggtaat tggaaggtgg gctgtcaacc caccaccatc ttaccgccgc 4920 attgccttgt gtttggccga tggacgatct ccatgtcatc gctgtttgta tgcttgccat 4980 gaccactttc acagcagtgg gagttgtgct tggttgctgc attggttgta tagaagccct 5040 ctgtggcagt aaacgctaaa catgtatctc ggtctgtgcg agatgcaact caaaaacaag 5100 tagggagctt gggctcagtg agaggattaa cgaccctcag taaaggctgg tcctggtgga 5160 catgaataac ccgctatagg acgaagtgga agccaaccac tgatcaaata tggcagcttg 5220 cttatgagct gtacactgcc ccagaggata ctgggtaaac aaatctatcc acccaactcg 5280 atgaaatgag agtggaggtg gcggggtggg tgaccccgtg atgtacaccc gagcgtcagg 5340 attgaagacg tcataaaact caacgagatg agcaacactc gttaaaagtt ccccggctga 5400 tacacccagt cggcccgacc cgtaggcata ccctcgatac gaaacgaggg ttcctaggag 5460 ccaccacctg tgatgcaagg tggggtaaga gtcttagcaa gctctgtacc tgggaatgga 5520 cataaaccat agcaatccta cggcatccgg ggcgcgagct ttccgcacta ggtgaagcgt 5580 gccactggcc tgttgcaagc aatctagctc tgcttgcaac agtatccctt agaagcaatt 5640 cttcgggggg actggattct aactgccggc actcgaaaga gaagcccggc atccc 5695 //