ID   AF325738; SV 1; linear; genomic RNA; STD; VRL; 2171 BP.
XX
AC   AF325738;
XX
DT   08-OCT-2002 (Rel. 73, Created)
DT   17-JUL-2008 (Rel. 96, Last updated, Version 4)
XX
DE   Cowpea chlorotic mottle virus strain R segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cowpea chlorotic mottle virus
OC   Viruses; Riboviria; Bromoviridae; Bromovirus.
XX
RN   [1]
RP   1-2171
RX   DOI; 10.1007/s00705-008-0137-3.
RX   PUBMED; 18604602.
RA   Quan S., Nelson R.S., Deom C.M.;
RT   "The methyltransferase domain of the 1a protein of cowpea chlorotic mottle
RT   virus controls local and systemic accumulation in cowpea";
RL   Arch. Virol. 153(8):1505-1516(2008).
XX
RN   [2]
RP   1-2171
RA   Quan S., Nelson R.S., Deom C.M.;
RT   "The 5'-half of the 1a protein gene of cowpea chlorotic mottle virus
RT   facilitates phloem-dependent accumulation in cowpea.";
RL   Unpublished.
XX
RN   [3]
RP   1-2171
RA   Quan S., Nelson R.S., Deom C.M.;
RT   ;
RL   Submitted (01-DEC-2000) to the INSDC.
RL   Plant Pathology, University of Georgia, Plant Sciences Building, Athens, GA
RL   30602, USA
XX
DR   MD5; caf62685fb80bd04955d770dd3fc220d.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2171
FT                   /organism="Cowpea chlorotic mottle virus"
FT                   /segment="RNA3"
FT                   /strain="R"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12303"
FT   CDS             239..1147
FT                   /codon_start=1
FT                   /product="3a protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q77JE5"
FT                   /protein_id="AAN37633.1"
FT                   /translation="MSNTTFRPFTGSSRTVVEGEQAGAQDDMSLLQSLFSDKSREEFAK
FT                   ECKLGMYTNLSSNNRLNYIDLVPKNTGSRALNLFKSEYEKGHIPSSGVLSIPRVLVFLV
FT                   RTTTVTESGSVTIRLVDLISASSVEILEPVDGTQEATIPISSLPAIVCFSPSYDCPMQM
FT                   IGNRHRCFGLVTQLDGVISSGSTVVMSHAYWSANFRSKPNNYKQYAPMYKYVEPFDRLK
FT                   RLSRKQLKNYVRGITNQSVNHGYLLGKPLLKTDEQDPEMIVLEEESLTPTDSNGVGKDK
FT                   IAVTAKSVAGLPTASLSINRR"
FT   CDS             1358..1930
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q8BEM4"
FT                   /db_xref="InterPro:IPR002009"
FT                   /db_xref="UniProtKB/TrEMBL:Q8BEM4"
FT                   /protein_id="AAN37634.1"
FT                   /translation="MSTVGTGKLTRAQRRAAARKNKRNTRVVQPVIVEPIASGQGKAIK
FT                   AWTGYSVSKWTASCAAAEAKATSAITISLPNELSSERNKQLKVGRVLLWLGLLPSVSGT
FT                   VKSCVTETQTTAAASFQVALAVADNSKDVVAAMYPEAFKGITLEQLAADLTIYLYSSAA
FT                   LTEGDVIVHLEVEHVRPTFDDSFTPVY"
XX
SQ   Sequence 2171 BP; 594 A; 453 C; 526 G; 598 T; 0 other;
     gtaatcttta ccaaacaact ttcaaacttt atagtttatg tagttgctgt gattcccgtg        60
     agcagcgttt agattactga cttggacaca tcggtttttg aagcatcgga tagaggtgat       120
     taacgctaaa ccgtaccata gtaggctgtt acctgactcg aactcaggcg gacgtcagct       180
     gacattcacg gaatagttcg atatcataat tcctcgttct ttgctgttat agctcccgat       240
     gtctaacact acttttagac cttttactgg ttcctccagg accgtggtcg agggagaaca       300
     agccggcgcc caggatgata tgtcgttgtt acagtcactt ttttccgaca aatccaggga       360
     ggagtttgct aaggagtgta agttgggtat gtataccaat ttatcctcta ataaccggct       420
     taattatata gatctagtcc ccaagaacac tggtagtaga gctctgaact tatttaagtc       480
     agagtatgaa aaaggtcaca ttccctccag cggtgtgctt agtataccta gagtgctggt       540
     ttttcttgtg aggacgacaa cagtgactga atctgggagt gtcaccatta gattggttga       600
     cttgataagc gcttcgtcgg ttgagatttt agaacctgtg gatggtacgc aagaggctac       660
     tattcctatt tctagtcttc cggctatcgt ttgtttttct cctagttatg actgtcccat       720
     gcagatgata gggaatagac acagatgttt cggtttggta actcaactgg atggtgtcat       780
     atcctcaggg tctaccgtcg ttatgagtca tgcgtattgg tctgcgaact ttcgtagtaa       840
     acctaataac tacaagcagt acgcacctat gtataagtat gtggagccct ttgacaggtt       900
     gaaacgtttg agtcgtaaac aattgaaaaa ttatgttagg ggcataacga atcaatctgt       960
     aaatcatggt tatctattgg gtaaaccact actgaagact gacgagcaag atccagagat      1020
     gattgtgtta gaggaggaat cactaacccc taccgacagc aacggagtcg gcaaggataa      1080
     aatcgccgta accgctaaat ccgttgcggg gcttccgacg gcctcgttgt ctatcaatcg      1140
     tagatagcta gatctattgc taacagactt agtgtcatgg gagcaaaact catatgaggt      1200
     cagtgaaaca tgaattggga agaatcagaa cccgccgaaa ggacaggctg agggcgtacg      1260
     attcatgtgt agctggctgg gtgtgagaca caaaaaaaaa aaaaaaaaaa aaaaaaaaaa      1320
     aaaaaaaaat ctatgtttaa tttgatagta atttatcatg tctacagtcg gaacagggaa      1380
     gttaactcgt gcacaacgaa gggctgcggc ccgtaagaac aagcggaaca ctcgtgtggt      1440
     ccaacctgtt attgtagaac ccatcgcttc aggccaaggc aaggctatta aagcatggac      1500
     cggttacagc gtatcgaagt ggaccgcctc ttgtgcggct gccgaagcta aagcaacctc      1560
     ggctataact atctctctcc ctaatgagct atcgtccgaa aggaacaagc agctcaaggt      1620
     aggtagagtt ttattatggc ttgggttgct tcccagtgtt agtggcacag tgaaatcctg      1680
     tgttacagag acgcagacta ctgctgctgc ctcctttcag gtggcattag ctgtggccga      1740
     caactcgaaa gatgttgtcg ctgctatgta ccccgaggcg tttaagggta taacccttga      1800
     acaactcgcc gcggatttaa cgatctactt gtacagcagt gcggctctca ctgagggcga      1860
     cgtcatcgtg catttggagg ttgagcatgt cagacctacg tttgacgact ctttcactcc      1920
     ggtgtattag tgcccgctga agagcgttac actagtgtgg cctacttgaa ggctagttat      1980
     aaccgtttct ttaaacggta atcgttgttg aaacgtcttc cttttacaag aggattgagc      2040
     tgcccttggg ttttactcct tgaacccttc ggaagaactc tttggagttc gtaccagtac      2100
     ctcacatagt gaggtaataa gactggtggg cagcgcctag tcgaaagact aggtgatctc      2160
     taaggagacc a                                                           2171
//